AMCG00003144


Basic Information

Item Value
gene id AMCG00003144
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12851021 ~ 12855341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003144
ATACACACTTTGAATTTGTGCCAAGGGGTATTGTATGTGTAATGTTTCCCCACTCCGTGTAATACCCATTTTCTGTCATGTAGATTTGTTAAGTGTGCTTCTCAGATTAAAGTTTAatgggaaatacatttaaataggtGTTTGCAACATTCCCTAATACTTAATCTGGATAACAGATGGGAAAGACACCATGAATGCATTATCGTGAAGGGAAGGGCTTTATGTCTATCTAGTGACTTAGCATCTGAGGTTTTTTCAGTTGATCCCTTTTTAAAGTCCTATCAATCATGTATCATATGTGTCCTTTTAGAGATTAGGCTGTTATCCATAAGCTTTGCTGAAATGCAATTACACCACTGTAAAGGAATGCAAAAAATGAATCTGATAGAGAGTCACTTAcagcatggaaaaaaaatctgcatcaCAAATAGGATTTTTAAATGGCAGATCACTTTTcatttgatcatatatataattctcAGATTCGTACAGCATGTAATGGTCTGAAAGCAAAGACATTGAATGTAGCTTATTGATATTGGTGGACAACTAAtaagcaaacttttttttttttcaggaagtAAAATAAAGGTGAATAAAGACATTCTTTCCACTGTATTATGCAAATTGCTTTGCCTAAAGCTCGGAGCCGTGTAGCAAAAGTGTGAGAACGACTGCATACCTGCCTGTGCTTGCCTTgtcaaaaacaaccaaaacttgtttgtataaataatacttCTGAGCTACTACAGATTGATATAAGGGTTGATTAAGGGTACATTTCATGTTTCAGTTTGAAGATACTGATCAGTCTATGCACAGTCCTGTATATAAGAGAACGGAAAATTGTTCTTTTAACACTGCACCCGCAACAGAAACTACAAAGCTAAAATGCCCATTGGAGGACAGGTCTGCAGACACGTGGATGACACAGCTGAAGAAAccacttaattatattttttgtttcttaagtgaaaaatatgtaCCTTGACttgaaatattacaataatgaaGTGCCTACAGACTATTTTAAGTGGGTTCTATTGTCCTTGTAAACAATTTTCACTTTCAGTATTTCTGAGAAATTCTTCACTTCTTGATTGAAGACAGGTTAAACCACTGAAAGAAATGATAACTTGGAATTGTGAAGATGGCTTTTAATGGCACCTGGGCAGAATACCGAAATGAAAACTTTAAAGAATTTTTGGAGGTGTTAGGAGTGGATGTAGCAAAACTgggagattttaaaaatttcAACCTGGAGCTCACGATGAAACAGGAGGGGGACCATTTCACCATGATCGAGAAGAGTGCTTTTCGAACCAAGGAGACCAGCTGGACGATGGGTCAAGAGTTCCAGGGCGATCTCGCTGATGGATCTGTGATGAAGGGGACCTACACTTTGGAAACACCCAATCGCTTTGTTGGAATGTTCACCAGGGTTTCTGATGGCAAGGAGATGGTGAACAGCAGAGAGGTGGATGGAGATGAGATGCTTCAGACAACCACATTTGATGGGGTGCAAATGAAAAGGTACTTCAAAAAAGAGAAATAGTTTTCCTGAACAAAATCCTGACTGGAACTGCTTCAGGTTGGATTCTGGAATCTGCTCTGCTGTTTCTTGGGTCACTGCATCCTAATGTCACTTTTAAAGGGAATATGTGTTTTGTGAAGATGAATAAAactttttcaaataataca
>TU177331
GTGAGTGTTCAACACCTCCACTCTTTTCCCGGTcctgcagcacagagcacaATAACGGCAAGGCAgTGTGAAGATGGCTTTTAATGGCACCTGGGCAGAATACCGAAATGAAAACTTTAAAGAATTTTTGGAGGTGTTAGGAGTGGATGTAGCAAAACTgggagattttaaaaatttcAACCTGGAGCTCACGATGAAACAGGAGGGGGACCATTTCACCATGATCGAGAAGAGTGCTTTTCGAACCAAGGAGACCAGCTGGACGATGGGTCAAGAGTTCCAGGGCGATCTCGCTGATGGATCTGTGATGAAGGGTTTCTGATGGCAAGGAGATGGTGAACAGCAGAGAGGTGGATGGAGATGAGATGCTTCAGACAACCACATTTGATGGGGTGCAAATGAAAAGGTACTTCAAAAAAGAGAAATAGTTTTCCTGAACAAAATCCTGACTGGAACTGCTTCAGGTTGGATTCTGGAATCTGCTCTGCTGTTTCTTGGGTCACTGCATCCTAATGTCACTTTTAAAGGGAATATGTGTTTTGTGAAGATGAATAAAactttttcaaataatacaCGTTATGTA
>TU177332
GTGAGTGTTCAACACCTCCACTCTTTTCCCGGTcctgcagcacagagcacaATAACGGCAAGGCAggaagtAAAATAAAGTGTGAAGATGGCTTTTAATGGCACCTGGGCAGAATACCGAAATGAAAACTTTAAAGAATTTTTGGAGGTGTTAGGAGTGGATGTAGCAAAACTgggagattttaaaaatttcAACCTGGAGCTCACGATGAAACAGGAGGGGGACCATTTCACCATGATCGAGAAGAGTGCTTTTCGAACCAAGGAGACCAGCTGGACGATGGGTCAAGAGTTCCAGGGCGATCTCGCTGATGGATCTGTGATGAAGGGTTTCTGATGGCAAGGAGATGGTGAACAGCAGAGAGGTGGATGGAGATGAGATGCTTCAGACAACCACATTTGATGGGGTGCAAATGAAAAGGTACTTCAAAAAAGAGAAATAGTTTTCCTGAACAAAATCCTGACTGGAACTGCTTCAGGTTGGATTCTGGAATCTGCTCTGCTGTTTCTTGGGTCACTGCATCCTAATGTCACTTTTAAAGGGAATATGTGTTTTGTGAAGATGAATAAAactttttcaaataatacaCGTTATGTA
>TU177333
GTGAGTGTTCAACACCTCCACTCTTTTCCCGGTcctgcagcacagagcacaATAACGGCAAGGCAgTTTTGTTTGGTCTTGTCTTTTCGATTCCAGTGTGAAGATGGCTTTTAATGGCACCTGGGCAGAATACCGAAATGAAAACTTTAAAGAATTTTTGGAGGTGTTAGGAGTGGATGTAGCAAAACTgggagattttaaaaatttcAACCTGGAGCTCACGATGAAACAGGAGGGGGACCATTTCACCATGATCGAGAAGAGTGCTTTTCGAACCAAGGAGACCAGCTGGACGATGGGTCAAGAGTTCCAGGGCGATCTCGCTGATGGATCTGTGATGAAGGGTTTCTGATGGCAAGGAGATGGTGAACAGCAGAGAGGTGGATGGAGATGAGATGCTTCAGACAACCACATTTGATGGGGTGCAAATGAAAAGGTACTTCAAAAAAGAGAAATAGTTTTCCTGAACAAAATCCTGACTGGAACTGCTTCAGGTTGGATTCTGGAATCTGCTCTGCTGTTTCTTGGGTCACTGCATCCTAATGTCACTTTTAAAGGGAATATGTGTTTTGTGAAGATGAATAAAactttttcaaataatacaCGTTATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003144 True 1701 mRNA 0.37 5 12851030 12854491
TU177331 False 583 TUCP 0.44 5 12851021 12855341
TU177332 False 597 TUCP 0.43 6 12851021 12855341
TU177333 False 613 TUCP 0.43 5 12851021 12855341

Neighbor

gene id symbol gene type direction distance location
AMCG00003142 tm9s3,tm9sf3 coding downstream 2188 12823947 ~ 12848833 (-)
AMCG00003145 tll1,bmp1a,bmp1,LOC106534203,LOC107591552 coding downstream 65735 12760842 ~ 12785286 (-)
AMCG00003132 NA coding downstream 94552 12747436 ~ 12756469 (-)
AMCG00003137 prdx3,LOC100194723 coding downstream 129600 12717621 ~ 12721421 (-)
AMCG00003135 NA coding downstream 139092 12710331 ~ 12711929 (-)
AMCG00003143 NA coding upstream 6954 12862295 ~ 12869324 (-)
AMCG00003146 herc4 coding upstream 23468 12878809 ~ 12899145 (-)
AMCG00003147 NA coding upstream 50199 12905540 ~ 12916369 (-)
AMCG00003148 NA coding upstream 64468 12919809 ~ 12971234 (-)
AMCG00003152 NA coding upstream 131009 12986350 ~ 12986772 (-)
G140971 NA non-coding downstream 20095 12821902 ~ 12830926 (-)
G140906 NA non-coding downstream 245069 12605752 ~ 12605952 (-)
G140904 NA non-coding downstream 247990 12602822 ~ 12603031 (-)
G140883 NA non-coding downstream 488817 12357446 ~ 12362204 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 1054007 11795976 ~ 11797014 (-)
G141175 NA non-coding upstream 705178 13560519 ~ 13560839 (-)
G141201 NA non-coding upstream 910615 13765956 ~ 13836294 (-)
G141219 LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390 non-coding upstream 968073 13823414 ~ 13834549 (-)
G141221 NA non-coding upstream 987838 13843179 ~ 13843471 (-)
G141225 NA non-coding upstream 990609 13845950 ~ 13846159 (-)
AMCG00003138 NA other downstream 111214 12728238 ~ 12739807 (-)
G140757 NA other downstream 1117259 11694006 ~ 11733762 (-)
G140758 NA other downstream 1203402 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 1228372 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 2519649 10301800 ~ 10331372 (-)
G141004 NA other upstream 6085 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 551931 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 1814074 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 2201302 15056643 ~ 15140819 (-)
G141826 NA other upstream 3892720 16748061 ~ 16748431 (-)

Expression


Co-expression Network