AMCG00003158


Basic Information

Item Value
gene id AMCG00003158
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13106456 ~ 13110634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003158
ATGGCATACCAGGCGACCGGGCTGCACGCCAAAGTCAGCCGGCTCTTGAGTAAGGAGATGGGGAAGCCGGTTCTGAAGGCAAACAAGCCGCTAGCCTTGAAAAACGAGGTCGCCAACAGGAAGATGAAGAAGGGAGAGGCGAGCTGCATTACAGAGATGATGGCGGTGATGGCTTGCTGGAAGCAGAATGACTTTAAGGACACTCCCTGCTCCAAAGAGGTGCAGACCTTCTACCGGTGCACAGCCAAAGCACAGGCCGAATTGAAAGCTCAACAGGGACAGCACAGGAAGGGCCAGGGAGAGCGCCTCCCGCCGAGAGAAGCCAACACCCTTCTGAGACGACATCCCAATCTCTATAACGAGATATAG
>TU177434
TGTTAGGAATGCTGCGGGAGAAAAGGTCGCTCTGGAGGCTGGTGTAAAGTGTACAGcaggtttatttgtatttatttattgcaacgTTGTCTGATTTGCCGGTGTGTGGTAGCCATGGCATACCAGGCGACCGGGCTGCACGCCAAAGTCAGCCGGCTCTTGAGTAAGGAGATGGGGAAGCCGGTTCTGAAGGCAAACAAGCCGCTAGCCTTGAAAAACGAGGTCGCCAACAGGAAGATGAAGAAGGGAGAGGCGAGCTGCATTACAGAGATGATGGCGGTGATGGCTTGCTGGAAGCAGAATGACTTTAAGGACACTCCCTGCTCCAAAGAGGTGCAGACCTTCTACCGGTGCACAGCCAAAGCACAGGCCGAATTGAAAGCTCAACAGGGACAGCACAGGAAGGGCCAGGGAGAGCGCCTCCCGCCGAGAGAAGCCAACACCCTTCTGAGACGACATCCCAATCTCTATAACGAGATATAGGGCCAGGGAACTAGGCCCAGGCAGTGGTAGCAAAGTCACGTTGCCATAAAGGGTCTGGCAGGTGAGGTGATACTAAAAGAGACAGTCACCTACAGGGCAGTACAAAGACTGTGTAAGCCCCCCCCGGACTTGCTTTCGCCCAGGAGATTTCATTACTGTGTACAGCTGTATTTCATATTGGGGGACTCAATGTTTCATGGTTTCAATGAAGAACAAAAGCAGTAGAGGCTGGGCAAGTTCCCGGACATCTTTGTATGTTCACTGAGATTTTGCCAATGAATGCAGAGCAATTCCCAAAACATATCCAAAAATTGTTTTTGGATTGAACAGTGGTGTACAGTAAATGAATCATGCAGTTAAACATCTTGTATGGAACACCCTGAAAggcttttctgtctttttttttttttgatgatcTGCCCTGGATTGTTTTGTATGCCCTCGGGTATTTAATTTCTGGCTCAAGAAGAGTCATAAAGTCAaaagcacagatttattttctataggAATGTGCTGCAGGCGAATTCGTTGCCTCTTGTGCTGAGCTCTTGCCTTTTTTGAATACAGcctccatttgttttattctagtCAGAGTCTTATCAAGTCAATCATAGTGCAGTGTGTTGGTGTTGAAGTAAACTATACTGGAAGATACACCATCAGTTCCACAGCAAGATGGTAGAAGACCAAAATAGCGTTAGATGACATGCAGAATCACGGCACTAGACTGAGACGAGCCTAACGTTTCACCACAGTCCCGGCTACATGACTGAGATGATCACGAAATAAAAGAACAATTAaactacataaaaaaattaaagtccTAAGGGGTTAAGTCCTAGCAGGCAGGAAGAGCAAGGAATCTATTTCAGCAATGCAGACGCTATTAATCAGATCAACATAAAGCGCTGCcagtttttttaatgctgctgCAGAGTAAATGGGCTGGATTTACAGCGCTGCAAATTCACTCTTGATGATTATTTCTCTAATTAAGTATACTGTTACAGCATTGAAAAGGTCATCACATTACAGTATCATGTAGAGCCATTTATTAACGATTTCAGACGTACAAAAGCTTTTCTCTTCATAAAACTCAACTGAGGACCAGTCGATTTGCTTGAGCCGGATTTGCCTAAGATAACTAATTAAAagcaagtgtattttttttgctgttaaataaaatgttcgCAGGGCTGTATAAACATTTTATCCCATCTCCTGGAGCAAGCATAGTAGGTGTTATTCTTTCTCATGCATgattaactttatttaaaactacTCATACATTACAGATTACAATTTGCTTTGCAATGTTATAGCTGAGACTACTAGGACTCCAAAGTACaagaacacacacagagcttTGCCAGATTGAAATAAGCAGTCTTGAAATAGTATGTATGTTACCCAACATCACAGAGAAGCTAAAGCTAAAGGTGACGGGCAGTTTTAACCGAGAGATTGTGCTGAACAATGCCCACTTCAAAAACGTTCAAATGCTACAGTAGACACTTCTAACTTTCTCTCGACGACATATGGTGTGTACAGATTTAGTTCTTGTGCTATAACTGGATCTGTTAATTCATCCATCACTGAAAACGAAAAGTGCACACTTGGATAGTTTCTCTTTTTACCTGCCTCATGTATTTTCCCCCCCTCTGCCCTGAACCTGTCATTACAAGATGAAATCCAGCTCTGATTGATGTCCTAAGGGTGCTGACTGATTGTGTGTTGTCTCCAGATGTGAACAGTCAACCCCATGACAAGGATGGAATACACACTCACTGTAGAGCGTTTGATCCATTTCAGGTTGACGCTCTGGGCTCTTGGAACAATTTGAGTTGATCAAGCAGAAAAGCATATtatgataattttttttaattccatacACCTGTCTAAATCTAAAACTGCAAGAAGGCAGAATTATTCAGTACCTAAAATTGACTTATATATATAAGGCCGTAGTGGGCGTAACCTGGAGTGGCTCAGCCTGCTGTACAAGGGGGGGTCTTGCTCACATCCATGCCCAATGTTCTGGAGAGTTCATGAATGCCCCCTCACCCCGTTCACACACGTGGACTGAATCACATAGAAACACATAACCAGTGTGCTGTCTTCTGTACTATACCCCCCAACCCCGTCCTTCTGATCAAATCTGCTTCCTCTGCTCGCCCTCAAAGCACTCTGACTGTCCACTGCGCACCGTGTGAAATGTGATTGTTATAGAATCAATCTGATAACAAAGAAGATGCTTTCCAAAAGAGGCTTTGTTTGATTGCTTCATTGCTTTATTGGATTACCTGCcaggaaaacaaatccatccTGATGGCTATTCTGATTACAGTGAAAGTATAAAAGTTGAAATCGCTCTCCAGTATTTTACTACAGTACCTTGTCACTATTGTCATTCTGATGTTtgcgtgtttgtttttactaaacCTTTACTTCT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03010 Ribosome
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003158 False 369 mRNA 0.55 3 13106570 13108182
TU177434 True 2935 TUCP 0.43 3 13106456 13110634

Neighbor

gene id symbol gene type direction distance location
AMCG00003157 NA coding upstream 49467 13029086 ~ 13056989 (+)
AMCG00003156 pkd2l1 coding upstream 86979 13006812 ~ 13019477 (+)
AMCG00003151 NA coding upstream 105851 13000165 ~ 13000605 (+)
AMCG00003149 NA coding upstream 124388 12970705 ~ 12982068 (+)
AMCG00003150 NA coding upstream 157879 12945804 ~ 12948577 (+)
AMCG00003155 LOC106606783,LOC106576964,LOC105023245,LOC108438184,LOC104924867,LOC103357113 coding downstream 5564 13116198 ~ 13135069 (+)
AMCG00003154 zswim8 coding downstream 29948 13140582 ~ 13167943 (+)
AMCG00003160 ndst2,LOC106606834,LOC107726987,LOC107666426,LOC107743572 coding downstream 113694 13224328 ~ 13269167 (+)
AMCG00003162 NA coding downstream 322680 13433314 ~ 13454377 (+)
AMCG00003163 NA coding downstream 346301 13456935 ~ 13467244 (+)
G140961 NA non-coding upstream 275350 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 820180 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 947705 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1472931 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1568502 11537647 ~ 11537954 (+)
G141066 NA non-coding downstream 1103 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 449964 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 732545 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 734112 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 735316 13845950 ~ 13846154 (+)
AMCG00003141 LOC105923605 other upstream 223458 12878685 ~ 12882998 (+)
G140939 NA other upstream 366689 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 428297 12371999 ~ 12678159 (+)
G140693 NA other upstream 1618572 11486191 ~ 11487884 (+)
G140613 NA other upstream 1894345 11209573 ~ 11212111 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 614276 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1012149 14122783 ~ 14131275 (+)
G141331 NA other downstream 1070146 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 1173216 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 1490683 14601317 ~ 14605548 (+)

Expression


Co-expression Network