AMCG00003163


Basic Information

Item Value
gene id AMCG00003163
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13456935 ~ 13467244 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003163
CTCCTGATCTCCCTGCACTTTGCATCAGCACTTTGTGCTGTGCAGACCCCCAAGGACCGGCCATCCAAACTCTTGCCTGGACAACGACAACACCCTGTGATGTAGAGAGAGAGCCTTGCAGGTCAGAAGGAACCGGGGACTTTGCACATTTTGTGGCGCCACTTATTCGTAAAACTTTGTTGCGGTCTTGTTTTCAATTTTGCTACCGCTTTCACCTtccattttttcatttgaaggaTTCCCAAATCTTAGGTTGCAGTCATGCCTCTCTCAGGGACCCCAGCCCCAAACAAGAGGAAAAAGTCCTCTAAGATCATTGCAGAAATATCTCAGGAAGTCCTAGAGCAGACCGAGCCAGAGTCATCCAAGCTGAACCTGGGCAAGAAGATCAGCACCCCCAAGGACATCATGCTAGAGGAGCTGTCTCTGCTCAGCAACAAGGGCTCCAAGATGttcaaactgaggaagaagagGGTGGAGAAGTTCATCTGGGAGAACAACCCTGACCTCTTTAACCCCGAGTCAATGGAAAACTTCCACAAGCTGGTGCCCAGCCTGGGGGGGGAGATGCAGTCGGGGCTCAGCATGATGGACGTGGGTGGCCATCTGGTCAGCGGGCAGATGGTGGGCCAGATTGGCGGGGGCAAACTCATGCACCCTCCTGTCCCCCCTCCTAAACCTGGAGACCGTAGCAAGGGCTTTGGGGCAGGGGCCGGGGGCGCCGGGGGAGCCGGGGGCACCGGGGGAGCTGGCGCAGGTGGCGTCGGTGGCACTGGGGTGATTGAAGGACATGGTGTCTCTGGTGGAAAAGGTGGGGACAAGGGCAGATCGAAGACAAGGGTGGAGATAGTGAAGACGTACATATCTCCATGGGAACGGGCCATGAAAGGGAATGAGGAACTGACGGCCACCATGAGATTCAGAATGCCAGGACCCTGCTCCAAGGACGACCTGCCCAAATACAAGTGCTTCAATAGGACCGCCATGCCCTTTGGGGGCTACGAGAAGGCCTCTAAGCTGATGACGTTCCAGCTGCCGGATATTGACATGGCCCCCGAGGAGCCAGAGCAAGCGGTGGTCTACCATCAAGACCTCGCTGCCCGGCCCTCTTTCAACCGCACGCCCATTGGCTGGGTGGGCAGCGGGGAGCCCAGCCAGGTCACTGTGGAGCTGGACACCATGCCCTTCGATGGGGAGACAGATGACCTCTGAGGCACCCGGCCCTGGACACGGTGTTCTCGTCAGTCCATGtacccacacactgacactcacacaacTTGCTCCTCTGTTAAGTTTTGCCTCGGTCAGTTTCACAAAGGCCGAGACCGATGATGGTAAAAAACCCATTTTGGAAAGCTGCCAGCCACAATTGGAGCCGTATTAAACCTTTTTAATGCGTGCATGTGGTTTGAaaaaagcacatacacacacacacatacatacatacacacagacacacaatataTCCAAAGACCCTAGATTAATCTAGGCTATCCCTGCCTCTTTCTTCTGAATCAGGAGTTTGAGAGTGTTAATCTGAGCTAATACATAGTGCCATgctgtattaaaatgaacaccctCCAACTAAATTGTGGGACTGTCCAGTTGTCCTATCATACTTTTGCACCTATGGTATACATGTTAGCCTTTTGCAGGAGCATCTGCATAAGGTCCAGCACCATACCCATAGCCAAGCAACATCATACTGTGGTATTTGTGTCTGCTCCcatttgtgcttggtgtttttcCCCTCCCTAGGTGTACTTTCACTatgactgtttattttaatatggcatGGCTCTGTATCAgctatgatttatattttcaaatgtttgttttaagtcCTGAAACCCAAAGAAGGATCCACCAACAAACTATGAAGTCACCAGCAAACCTCTCCAATATCCAcacccacatgcacacacatatatatttcaatgaatGTCTATGTGCTTCGTGTAGGACCTTTTCCACATGGGATAACATGTCCATTTCTGTAGAAGAACTTAGCGCGATAACACATAATTGTGACTGCGATAACTATACTGGTAACCATAGGAAATAAGAATGAGATGGAGAAAACATTGAGGTtgatattatttacatataataataatatatatgtactttgttttctgtgttgcaCTTTAGAAGTGGAGTTCTCTTCCATTTGAACAATTTGGGTGTTCTATATAGGGCTGGCAATACAACTTACTGGTGATAAAACAGAATCGTATTAAGAGGTAGTGTAGCTCCAAGACCAGTCAGTGAGACAGCCGAGCCCTCTATGTGacaagcacgcacacacacacacacacacacacacacacacacacactcacacactggcTGGTATTTCCAACTAGCTGCTACAGTAGAATTCACCTCCTCCAGAAACATTACATActatgttttctttaatgtaatAAACCTTCTCAAAAGTATCcctcatgttgtttttttgtgaggTGAgcagaatatacatatatggtaTAGGGGGTGCTGCTGATTAGTTTAGTCAGTAATCCCAGTTTCCTAATCCAGTCTATCCTCCACAGTCTTGTGGCTGCTTATTTAAAACACCTTAATCAAATCACGTATCTTGTATTAAATAGTGGCAAAACTAATGTGTCGACTTCAGTCTGTTGAGGTACTTGGAGCAACAGCCTTTAAACTTAAAGGGAAAGACTGAGGGGACTTAATTTAGGAAGCCTGATGCAGGTAGCCAGAGGATATAAAtcactttatttgtttgtttggtttgtccAAGCTCTCTGTTGATGAATTAAACTCTTAATTCGCTTAATTGTGCTAATCGTTTGCCAGTTGCTTTAATTATTTCAGCACCCAAACAGCTGGGGATTTGAAATGACTTTGGCAAGTGAATAAGTGACTTGAATTATACCACTTTTGACTGTCTGGACACATAAAAGGGGTGTGATAAAG

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003163 True 2946 mRNA 0.47 6 13456935 13467244

Neighbor

gene id symbol gene type direction distance location
AMCG00003162 NA coding upstream 2558 13433314 ~ 13454377 (+)
AMCG00003160 ndst2,LOC106606834,LOC107726987,LOC107666426,LOC107743572 coding upstream 187768 13224328 ~ 13269167 (+)
AMCG00003154 zswim8 coding upstream 288992 13140582 ~ 13167943 (+)
AMCG00003155 LOC106606783,LOC106576964,LOC105023245,LOC108438184,LOC104924867,LOC103357113 coding upstream 321866 13116198 ~ 13135069 (+)
AMCG00003157 NA coding upstream 399946 13029086 ~ 13056989 (+)
AMCG00003167 NA coding downstream 22564 13489808 ~ 13513249 (+)
AMCG00003166 NA coding downstream 51870 13519114 ~ 13557247 (+)
AMCG00003169 opn4a coding downstream 166184 13633428 ~ 13649760 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding downstream 237586 13704830 ~ 13721559 (+)
AMCG00003171 bmpr1a coding downstream 312912 13780156 ~ 13793709 (+)
G141066 NA non-coding upstream 344999 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 625829 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1170659 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1298184 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1823410 11631963 ~ 11633525 (+)
G141156 NA non-coding downstream 93354 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 375935 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 377502 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 378706 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 380086 13847330 ~ 13849411 (+)
AMCG00003158 NA other upstream 346301 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 573937 12878685 ~ 12882998 (+)
G140939 NA other upstream 717168 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 778776 12371999 ~ 12678159 (+)
G140693 NA other upstream 1969051 11486191 ~ 11487884 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 257666 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 655539 14122783 ~ 14131275 (+)
G141331 NA other downstream 713536 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 816606 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 1134073 14601317 ~ 14605548 (+)

Expression


Co-expression Network