AMCG00003166


Basic Information

Item Value
gene id AMCG00003166
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13519114 ~ 13557247 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003166
ATGGGCCCAGCAGGGCTTTTACGCTCCAGCTTCGATGAAGACATCATCACCGTTTCAGAGTGGCAGGTTCTCTGGCATCTAGATATTTTTCGCAGGAGCTTCAGACAGCTGACCACCCACAAATGTATGGAGGACTCCTGCATCTTCTGTGCTCTCAAGAGTATCTTCGCCCAGTTCCAGTTCAGCAGCGAGAAGGTGCTGCCCTCTGACGCCCTGCGCAGCGCCCTGGCCAAGACGTTTCAGGACGAGCAGCGTTTCCAACTGGGCATCATGGACGATGCGGCTGAGTGCTTCGAGAATATCCTGATGAGGATCCACTTCCACATCGCAGACGAGACCAAGGAGGACATCTGCACAGCCAAGCACTGCATCCCTCACCAGAAGTTCGCAATGACTCTCTTTGAGCAGtGCGTTTGCAACAGCTGCGGCGCTACGTCAGACCCCCTGCCTTTCATTCAGATGGTCCATTATATCTCTACGACGTCCCTGTGCAACCAGGCCATCCGCATGCTGGAGTGCCGAGAGAAGCCCACCCCGGACATGTTCGGAGAGCTGCTCCGGAACGCCAGCACCATGGGAGACCTGCGCAACTGCCCGaGTAACTGCGGGGAGAAGCTGCGGATCCGGCGTGTGCTGATGAACTCCCCCGAGATCATCACCATCGGCCTGGTGTGGGATTCGGACCACTCGGACCTGGCGGAGGATGTCATCCACAGCCTGGGCACCTGTCTGCGCCTGGGAGATCTCTTCTACCGCGTGACCGATGACAAAGCCAAGCAGTCGGAGCTGTACCTTGTGGGCATGGTGTGCTATTACGGCAAGCACTACTCCACCTTCTTCTTCCAGACCAAGATCCGCAAGTGGATGTATTTCGACGATGCGCACGTCAAAGAGATTGGGCCGAAGTGGAAGGATGTGGTGTCCAGGTGTATTAAAGGTCACTACCAGCCCCTGCTGCTGCTCTACGCCGACCCACGAGGGACCCCCGTGTCCGCCCAGGACCTCCCGGCTCACCTGGACCTGCACCATTACAGCAAAGCTTACTACGACAGCGAGGACTCGGGCCGGGAGCCCTCCATCTCGAGTGACACGCGCACAGACTCGTCCACAGACAGCTACACCTACAAGCACTCGCACCACGAGTCCATGGCCAGCCACTTCTCATCGGACTCGCAGGGCACAGTCATCTGCAATCCCGAGAACGACACCGCCTCCCAGAGCAGCATGGAAACTGGCCAAATGACGGACAGTGAGCCAGTGCAGCGATACGCACTGAGGAAAAGCGGGACTGTGGACAGGAAGGGCGGGGCCGGGGACAGGAAGAGAAGCTCTAGTCGTCCGCGCTGGTTTGAGGAGCGAAGCCGGGCAGCTAAGGGAGACGAGGTGTCGTCCGCTGGGTACCACAGCGAGGGTGAAACCCTGAAGGAGCAGCAGGCCCCTCGCACGGCCCCTAAACCTGCGTCCAGCCGGCTGAAGGAGTTCAAGGAGACCATGAGCAACATCATTCACAGCCGGCCCCTGTCTTCCTCCTCAAGCtcagggctgggggggggcCCGGAGCTGGGTGCCAGGGCCCGAGACTGGGAGGCCGAGAGCACCAGCAGCGAATCCAAATCCAGCTCCTCTGGGGGGCGCTACCGACCGGCATGGCGGCCCAGGCGGGAGACGCTGAACATCGACAGCATCTTCAGCAGGGAGCGGCGACGGCAGGCCGGGTACAGCCCTCTGGGAGCCCAGCCCCTCCCCGAGGATGGAGGGTCGCCCGGCGAAGCGGCCCTGGCCACCGGCGGAGTGGGACCAGGGGTAACCCCGGCCAGTGGAGCCCGGctgcctcctccccctcccctgaGGAGCCTGGACAGCCAGCCCCGGCTCATCCAGAGGATGGAGAGTGGCTACGAGAGCAGCGAGAGGAACAGCAACAGCCCGGTCAGCCTGGACCTGCCCCTGAGCGAAGGGTCCACTGCCAGCTCACACAGGGAGGCGGCGGCAAAAAAGCCCCTGAGCTCGGGGCCGTCCTGGCGCAGTGTACCCAAGTCCAAGAGCAGCAGCGCCCTCCTGCAGGAGCTGAAGACGTCCACCTGGGGCAGCAGCCACATGAGCCTGGTAGGGGAAGGGCGCAGCGAGCTGGACGAGCTGCAGGAGGAGGTTGCTCAGAGGGCCAGGGAACAGGAGCTGcagaggaagaaggagaaggagagagaggcggCCATGGGCTTCAACCCAAGACCCAGCAAGTTCATGGACCTGGACGAGCTGCAGAGCCAGGGGAAGGTTGACAACTTTGAGAGGTCTCTGCAGGAGGCAGACTCACTTTTAGAGCAGTCACTGCGGCTAGAGCAGGGCGAGGACATGGCTGCAGCGCTCGCTGTCTGTAACGAAGCTGTGTCTAAACTAAGACTTACCATGCATGAGGGCAGTGCTAACACTCATAGCAGAACAATGGCTGATAAGAAGCTGCAAAAGTGCATGAGGAGAGCTCGAAGTCTACAGCAGCGCATGCAGCCGCAAGAACAGACTCATCCACAAGGGGGTGCTCTGCCCCAGTCGCAAAGTGAACAGCCTGTCCCGGTCCAAATACTGCTGACGTCCACTCATGAAGAGGACCAGGAAGCATCCCAGGACACAGCCCTCGGCCCGCCCTCTCCTCTCCACATTAAGCCCCTCTCCCACTATAGAAACCTGCACGCCGACCCCGCCAAGTACCCGTCTCCCTGCCCTCCTCACCCCGGGGCGCTGTCCCGGAATCAGGGCTCCCCAGGCCAGTCCTGGGAGCggctcccccctccctccagcCCAGGGGGGCGGGGGGTCAGGGCTGAAGGGGAGTGGGGGAGCGGTGCAACAACTGACCCCCTGAACCGCTGGGACAGTGCTGAGCTTTCCAACGTCGTTCAGAACTCCCACGGCGAAGTCCGGACCATCCACAAACACAACGCCATCTCCTTACCCATGCTGCCCCTGGAGAGCAGGGAGCGTCACGACAGTGAGGGGGAGAGCTGCTCCCCGCTGCCGCCTCCGCACCACGGCTCCTCCGCTGGTCCTCGCGACTGGACTTCCCTGCACAGCAGCAGCCCAACCCCTTACGTGCTGTCCCCAGGGCCCCCCGTCTGGCCTCCTGCAGACCCTCGGCCTCCTCTATCTTTGGAGTTCAGCCCTGAGGACAGGGGACTGGGCAAGGTGGATCACTTCCAGGCCTATCCCAAGTCCCCCAGGTCACCTTCCCGACAGCAGCCCACTCAGGACCCCTCACCAACACTCCCTCACTCCAATCCCAGGCTGGCGCCCCCCCCAGCTCCCCGGCACTGGTCTTCCTGGAGCCTGGACAGACCGGACGTCATCGAGACGCCTTTCTATACGGCCCCCGAATCCTGCTCCCACCACCACCCTCCCGCCCACAGCAAGCCAGGCCACCCCACTTCTCCTCGAGAGCTGGCAGCCTCGGGCCCCCCCATGCCAGTCGAGCGCTGGGCTGAGAACGTCACGCGCTACTACAGCTCCCAGACGCCCCAGCATCCAGACCTCGCCCCCAGGGAGTGCCCCGACTCACCCAGCCAGGAACTCTCTGAGCTGGAGTCCCTTTACCAGGCGAGTCTGCAGGCTCCCAGCACCCCCAGGCCCCTGGGAGGCCAGCAGGCCTGTGGCAAACCAGTGCCTGCCGCCGCCAGGAAGACGCTCTCTGGGGAGATGCAGCCGGGCCGATCCAAAACCCCCACGGCCGAGATTGAGAGGAACGCGTACAGAGCGCCTGGCTTCACCAGCTCCCCCACCCATAACCAAATGCCGGCGTCCCGTCAGGCCCGTGAGCTGCCACCGGGGGATGATGAGAACTACAGCGCCGAGAACCTGCGCCGCATCGCCCGCAGCCTCAGCGGCACGGTCATCGGAGGGCGGCCCGAGCCCATCGCCACCTCCCGCAGCTTTGAGCCTCCGGTGGTCAGCCGGACCAAGCATGCGGACGCCAGAGTCCCGCGTCACGCTAACACCTCCCCCCACTTCACTTCCTCCCACAACCCTCCCGTGTTTCCCTCTGACCCCCAACAACACCACCTCAACCATCACCATCGTCCCCACCACCGCCACCCTGTTGCACCACCGCACCTTTCCCAGCAGCCACTGCGGCCCAGTGTGGCGGGGCACACTCGGAGACTGCCAGGAGATCACCCGCAGGTCCAGAAGTTTTTGGCTGTGCTTGACCGGAGTGAAGCTCTCGCCAGTGAAAACCACCACAGTGCTGCACTGAGGTACGGCACGCTCCCCCGGGCTCCTCGCCGGGCCGCCCCAGCGCGGGATCCTGCGTCTCCCCAGCCCTCGGCTCACGGCTCCTGGGACCCCCCGGCCAGCAACGGGCACTGGGCCCACTCGACCAATCACCGGGCTGCCCCTCAACCCGGCTACGCCACCCTCGCCCACCCTCGCCTTGCAGCCACGGGGAGGAGCGGCTCTGACGGGTATCACAGCGGAGCCAACACCAGACCCCCGCCGCCGCCCAGCAGGACAGAGGCATCCAGGCGTTACAGCACCCAGCCTGCCGCCCGCTACCAGACCCTCCCCAGCCAGCCTCTGCGCCTGGACATGCCACCCGAGGGTGACTGGAGGAGGTCCGACGTCAGACAGGCCCCCCCTGCGCACAAACCCAGCGCGTCCCCCACACACCGGCAGCCCCCGTCTCGGCCCACTTCCCACGGCCGCACCTTCCCCGGCCCTGTCCAGCCCTGTGCTCTTTGCCAGCAGATGCCCACCGAGCCCCACCAAAACTACTGCCAAGTCTGCGCTGTGTACATGGCCCGCTTCCGCCCCGCCAGCTGAGTCTCTGACCTTAGTGTGTCATTGGAGATGCCCCAGTCGGTGGGGAGGCACGGTCAGCCTGCTGTGGTGCTGTGTGAGGGGTGTGATCCCACAGGCTGCGGCTCAAAGGGGAGAAGGTCCGCACAGCACCAAAGTCAAGATGGTTCCCTCTCCAGCTGGGCTGCTCTGAGCGTCACTTTCTGCGGACCTGCTGAGCACCCGGCTTCACACTGTCAGTGTTACAttgaaggttttatttattttatttgtgttgtttgaatACATTCATGACATGTCAgactttttccttttccatgttCATTAAGTGATGTAAAATGCAAGGAATGTTCATTAAGTACTTATTGGAATTTGGATATGatgctacacacacatacatatgtagtgtcgttttttttttttttttttaaacatgcccACTCGATGGGTCAAGTAGATTATGCATCAGTTATTACTGTGGACTTCACTGCTGTCTGGGACACGATCTCCAGTCTTCTGACTTTGTTTAGCGGTTATAAAGCCTGGGATGACGGATGGGTGGTTTTGGGGTGGCCTGTTTGAGGGGGTGACAAGCTTCCAAAGTTTGAGTCGCTCTCCTATCCTAACTTCACAGGTGAATGGGGGGCACGGTCCTTCTAAAGGCTGTATGATGTTTCGGTTTTCCATCGTTTATTACAAGGGCCTACCTTTGAGATCAGATGTCGTGGCAGCAGTGTTACAGGTCTTATAGTACCCAATTATAACTATAAATTACTTTTCTCAAGAGACCCTGAGTCAGTGGGATGTTTCCCGAggtctcctttttttttttttggaaaacgGAGCACATGCAAACAAGGAAATTTGAGAGCTTAGTCATCtgatgtattttgattttatttccttgatTGGAAGCAACAAAGCTGTGGAATACATCCCATTGTATTGGgtcaactttttctttttccccaagGTTAGTAACTGAATTTAGCATCCAGGCCCAGCTTCTAAATGGGGGCCTGGTTTGCCGCCCTGCAGGGGATGCTGTAATCAAGATCGTGCAGGGGCAGACTGTGGCAATCATAAATGGGGTGTTGTGGAAACCAATCGGAAGAAAGGGTTTTCAAACACAGGTGGGGTTAGGGGCAAAGACTCcagcactttaaaaaataaaaggttttgtaGCTGCTTTACTTGCTTTCAAATGAGTTGCATTAAACCCACAGACCTGTAGCTTCCTGTAGCAGTTGTGTTGCTGTCTTGACTGATGTTGCCTCCTAGTTTTCtatcaattaatttgttacttttacagttttattgtcCTTTTAAGCCATTCTatattcctgtgtttttttaaaaaggtaagtTGTGAACCAGTTGTAAGAGAGTTCCTATCAATTGGAGTTGACTGTTACTTTTAGATTTCTTTGACACTGTTAACACGAGTACAGGGTGGGTTTGGACATTTCAACCCATCACATGCAAAGAAACtaaaagactttttttttttttttgtactaatATTGCGATGGTAGGGTTTTTCCTATAGCAGATTTTCCATTCAGTCAAGCAGAGGTTTATAAACGATGAAAGcaacattaattaaactaaatcacTATTGAAATAACTTCATATAAGAATGGGAATACTGCATACTGATATATCTAATGCCAAAATAATCTCAGTGCAGAACACTACAATGCCTGTAACACCAggggaaataatgtttttccacACAACAACCATCTTCTGTCCTTCAGGGGGATAATCCAGGGTATTGAGATATAACGAGGTTTTAATACTTGTGGTGGTAGCGATAGTGAATGATATCGTGGCACTGGAGTGATGGTGGTTGAGGCAGCAGTTGGGTAGAAGGCCCTTTTTTAGTGTTCCCTTTCATAACTCCACTTCTACAACCACAAATTCGACTTTTCTAACGGTTAACGGTCTGAAGTGTGAGTCTGGGGACGCTTTCCTGAGGGGactatgccaaaaaaaaaaaagactgcttcATATAGGAATTCTTTGGGCCCCTGTACAGTTTCAGGATTCTTTTATCtagcatttaattttttcctccctttcctTTTTCTAACCTCCCCACCCACTCTCGGTCACATGTCTGTATTTCATGACGGGCATTTTTGGTACCACAGTAATTAAAATGGCACCTTTCGGTTGCGGCCGTGCTAAGAACAGACTGGCAGCTGTACATCCGCTTTGTcagaggaacacacacacaaacgcacacactgaTGATTTCACAAACCTACCGGGCCGGGCCCTGCAACGCATCGGGCCCCTCATTCCTGTAAATCCACCACCTTGACTACAGAGGCCCAAAAGGTCCATTCTGTGGACTGAAAACATAGTAGCTGGTTTTGATTTAGTCAGTGTGCCATTTGAAAGCGTATCTAAACCGGTTGTTTTAATGCCATTGTACATAACTTTACAGTAGACCAGTAGAGTAGAGCTGTATTCTGAAATGGGCAAATTCTTCTGAATGCCTCGCTGACCAACTCTGGAGTTTCTAAACAGTCAAACTTGTGCCGGGGGAGGGAGCACATTTTAGGTGTTTTCAAGATGTTTAGCTAGATGAAAATAATCTTAGGCCCATAGAATGTGTCATTTAGGCACGGGGGcacttttgtaatactttaCCGACCAACTAGCACTTCTGTACTGTGACAGATGCGCTTTTAGAAGTGAGGCTTCTGTATATCTGTTATAATGGACCTTTAACTCTAGATCAGACAGATTTCACTTGTCAATATTTAAGATGTTGCCTTGTTTTGGAAGGCAGGTATTAACAGACAATAAAAGCGCACAGCAATGGTAGAGACCTGGGAAATTTAGAACCTCATGTTTTGGTGGCCTTATAATATGCTTTCTGATGTTCAATGCTTAGAGAAGGCCAGTGCttctttcgttttttttgtttccatttcctgtttttaaattgacttcTATAACAGCAGCTCAGAACCGCAGCGATTTCCGACGCATGCTGTGGAAACAACTCTGTAATGAGAAAAGTAACAAATCTCCGACTCATCCTTTTATTTCAGATTCATACGTCGTTGTACTTTTTTCCTTGTGCACACATTATTCCGAGTTTctaaagaaattgaaaatgttaaccGGTTTTCGAAAAGCTGTGTCcaagagaaggaaaaagagTTTGTTTCTCTTGAGGTCAAGGAATGAATGGAAAcccttttgaaatgttttcgGCGTAGACGGATTGTGTAACCTGCATTGCTGCTTTTGAGTTCACAATGGACCGGCGGTGTCTGCGATGCACATTTCTTTTCCTGGGGGATGTGGAAATGGATCGTGTTCAATATTCATGAATTAACCAAAGATTGCCACTGTAGTGAAGAgagtaatttttatttattatgattattattattattattattattattattattaggtgtATTTTCACTGACATAAACCCGTTCATTTGATTGAATGAATGTGCAACACTGCTCCGTTCTGGATGGTTGGCAGCAATGCAGGTTATAAATCGGTCTGTTTTGACttcttttaactttttcttttttttgtaaaccaaaaaaggaaaaaccaaccaaccaactaAAAAGTTTATTGCAAACTATCAAgttatgtatatacatgtgtgtacaGAGATGACCTAGCCTTGAGAACGAGAGAACAGAGAAGTTTCCTGACAATGTAAAGGTATTCCGAAGGATTTACaagattttgtttgtaaatgatGTGCTGGAAAATGGAACTTGTATTTTTGCAATAAAGTTATTATAATGTGCTCCTAGAGAAGCACAGCACAACAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003166 True 8606 mRNA 0.54 21 13519114 13557247

Neighbor

gene id symbol gene type direction distance location
AMCG00003167 NA coding upstream 5865 13489808 ~ 13513249 (+)
AMCG00003163 NA coding upstream 51870 13456935 ~ 13467244 (+)
AMCG00003162 NA coding upstream 64737 13433314 ~ 13454377 (+)
AMCG00003160 ndst2,LOC106606834,LOC107726987,LOC107666426,LOC107743572 coding upstream 249947 13224328 ~ 13269167 (+)
AMCG00003154 zswim8 coding upstream 351171 13140582 ~ 13167943 (+)
AMCG00003169 opn4a coding downstream 76181 13633428 ~ 13649760 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding downstream 147583 13704830 ~ 13721559 (+)
AMCG00003171 bmpr1a coding downstream 222909 13780156 ~ 13793709 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding downstream 266643 13823890 ~ 13835041 (+)
AMCG00003175 NA coding downstream 332683 13889930 ~ 13895822 (+)
G141066 NA non-coding upstream 407178 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 688008 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1232838 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1360363 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1885589 11631963 ~ 11633525 (+)
G141156 NA non-coding downstream 3351 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 285932 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 287499 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 288703 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 290083 13847330 ~ 13849411 (+)
AMCG00003158 NA other upstream 408480 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 636116 12878685 ~ 12882998 (+)
G140939 NA other upstream 779347 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 840955 12371999 ~ 12678159 (+)
G140693 NA other upstream 2031230 11486191 ~ 11487884 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 167663 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 565536 14122783 ~ 14131275 (+)
G141331 NA other downstream 623533 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 726603 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 1044070 14601317 ~ 14605548 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005940 usp54a coding NC_007124.7 CM002897.2 22280983 ~ 22374036 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_05783589_05833813 USP54B, USP54 coding CI01000063 null 5783589 ~ 5834724 (-)