AMCG00003167


Basic Information

Item Value
gene id AMCG00003167
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13489808 ~ 13513249 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003167
ATGAATGCTTTAGCTTTTGGAAAGGGTCCAGTGCCTGAGAAAGTGGTTAGTTCATCGCAGGGGGAGAGCGCGGTCACAAGCATCCCCACAGATGGAAGCGGCTCGTCATTGTGTCGAGCTGCAGGTAATGGCGCCACCCATCCCCCCCCCGGCCCCGGCCCTGCCTCCGTCCCTCCCCCGGAGCCCGGGCTGGCTCATTATTACGGGTTCAATGCGCCCAGTCGTTTGTGCGGAGCGTTTTCCCCCGGGAGTGCAGAGCAGCGGCAGCCGCAGCAGAGAGCGTATCCGCGGGCACGCTGTGCTGTTCCCCGGCGGTGTGTGTCAGGAGCGGAGTGCTGCACCGATGCCATGTTAGAGGATGATTCTCTGCACTTCATTGCGGAGAAGGACGGTTCCTTGGTGATCAGAGCCGAGGGAGAGCCACTGCGACAGGCGCCACCTGCGGTCGGGCAGGTTGCTGGcgtgggggagggagggagggcggGAAAAGGGACCATGTCTTGGAAGAGGAATTATTTTGCATCGGGGAGCAGCGGCCTGCAGGGCATGTTCACCCCTCGCACCATGACGTCCATCGCACCCAGCAAGGGGCTCATCAACGAGCCTGGGCAGAACAGCTGCTTCCTGAACAGCGCGTTGCAGTATCAGGTGTGTACTGATCTTACCTTGATCAAGGACGGGCCACCAATCTCTCGCTTCTTCTAG

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003167 True 705 mRNA 0.61 4 13489808 13513249

Neighbor

gene id symbol gene type direction distance location
AMCG00003163 NA coding upstream 22564 13456935 ~ 13467244 (+)
AMCG00003162 NA coding upstream 35431 13433314 ~ 13454377 (+)
AMCG00003160 ndst2,LOC106606834,LOC107726987,LOC107666426,LOC107743572 coding upstream 220641 13224328 ~ 13269167 (+)
AMCG00003154 zswim8 coding upstream 321865 13140582 ~ 13167943 (+)
AMCG00003155 LOC106606783,LOC106576964,LOC105023245,LOC108438184,LOC104924867,LOC103357113 coding upstream 354739 13116198 ~ 13135069 (+)
AMCG00003166 NA coding downstream 5865 13519114 ~ 13557247 (+)
AMCG00003169 opn4a coding downstream 120179 13633428 ~ 13649760 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding downstream 191581 13704830 ~ 13721559 (+)
AMCG00003171 bmpr1a coding downstream 266907 13780156 ~ 13793709 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding downstream 310641 13823890 ~ 13835041 (+)
G141066 NA non-coding upstream 377872 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 658702 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1203532 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1331057 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1856283 11631963 ~ 11633525 (+)
G141156 NA non-coding downstream 47349 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 329930 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 331497 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 332701 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 334081 13847330 ~ 13849411 (+)
AMCG00003158 NA other upstream 379174 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 606810 12878685 ~ 12882998 (+)
G140939 NA other upstream 750041 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 811649 12371999 ~ 12678159 (+)
G140693 NA other upstream 2001924 11486191 ~ 11487884 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 211661 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 609534 14122783 ~ 14131275 (+)
G141331 NA other downstream 667531 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 770601 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 1088068 14601317 ~ 14605548 (+)

Expression


Co-expression Network