AMCG00003168 (LOC107706030,LOC107743565,LOC107666486)


Basic Information

Item Value
gene id AMCG00003168
gene name LOC107706030,LOC107743565,LOC107666486
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13724910 ~ 13743543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003168
AACAGTGTAAATAGCTCAGTCAAGCCCACCACTGCGCTGGAGGCTCTGCCAATCACTCCCGTCTTCCGCACCGGAGCTCTGCCCCAGCGAGTTGCCACCACCCCCTCCCTGCCCTCGGGGAAACCCAAACACCTGAGGTACACAGACGGACTAACCCCAGTGCGGCCAGCAGACCCTTACACTCAGCCCATGGGCCTACAACAGAGCTCCATTGAGATCCCAGTGGCCCCGCCGAAGCCCAGGcCCCGGCCCCTGCCCCGGCCCCCGCAGCCCCCAGCTCTTCCAGCCGCCCCCCCTGGGTCACAGACGATTCTTTTGCTCAAAAGCAAGAGCACCTCCACTGTCACCAAACACATCCACCCACTGCCCCAAGCTGCGCCCCCAGCCCCTGCCTACATCCCCAACCCTGTCCAGGCTCCCCCTCCGGCTCCCATGCCCACCTACAACCTCACACCTTCCCCCTTCGTCGCCCCCGCCGCCCCCACGGCTGCCCGTGGCGTGGCCCAGAGAGCCGAGAGGTTCCCCGCTGGCAGCCGGACGCCTCTCTGTGGAGCCTGCAACAGCATCATCAGGGGGCCCTTCCTGGTGGCGCTGGGGCGATCCTGGCACCCGGAGGAGTTCAACTGCCATTACTGCCACAACTCGCTGGCAGACGTGTGCTTCGTGGAGGAGCAGAACAACGTGTACTGCGAGGGCTGCTACGGAGAGTTCTTCGCCCCCACCTGTGCCCGCTGTAACACTAAGATCATGGGGGAAGTGATGCACGCACTGCGACAGACCTGGCACACTACCTGCTTCGTCACCAAGTGCCACGGCTGTGACTTCCCTGTGGAGGCTGGAGACAAGTTCATCGAGGCTCTGGGCCACACCTGGCATGACACCTGCTTTGTCTGCGCGgtgtGCCACGTGAATCTGGAAGGCCAGCCGTTCTACTCCAAGAAGGACAAGCCCCTGTGCAAGAAGCACGCCCACGCCATCAACGTTTAGGCGGCCGTGCCCAGCAGCGCCAGGGCAGGGCAGTGCTCTCGCAGCCGGGCGCTTCTTGAGAGAGGTCTGGGGAGCTGTCAAGGCCGGACAGTGCTTCACTTCCCAGAATTAAcgataaaacacaacacaaacaaaacaagaaacaaccTCATCTAATGATCACATGGGAGAAAAACTATCATTATTTTCAAGGCCTGATTCCATTGATGTTAGAGCATGTTGAATAACCATCTGTTTGCTCTACTATTCTAAATactattgatttatgtatttttcattgacaCTGAAGTCCTAGAAGTACTCAACGTTAAGCTCTGGTGCTGACCAAGATATTGTGGAGCCTAAGTAccattacattatatacatcCCCCTTTCCCCCCCAGACATTTCCCAGTGACCATAAATATGAAGAATTTCAGTAGATAAACATTTACAATGCCTTTTTACATAAACTACAGTGGCAGACGTTTTTACCCAAAATGACTTCTGACAATAACTCTGTTAAAGAACATGAAAAAGGCATTTTGGTTCATGAATTAAAGAGGGAATTGATGGGGGAAAAAGGACACTATTAAAACCCCAGAATATCTTGGTCAGCAGCTGATAACAAATCTTTGGTAAAACAGAAATCTTGCCTTGCGATTTTCCTAAAGGTCATTTCTTTAAAGTTGTACGAAACAAGAAGTGTCCTTTATCTGTTGAGGGAACTGTGACTTTTCTCTGTCAACTGGTTCTTGACACAGATAGATGTTTTGTGCATgtggatagatagataaaaacCTAGTCAGATAAATAGCATTAGCGTGGAAGATAAATAATATCATAGTTTTGTATTTACTGGTACATCTTAGTTAAATATTCTCTGCAATGGTTTGCCACAGCACTAGTTACATCAGCAGATCTTCATGGTACTCCACAAagctatttaaataatatattgaatgaGAAATGGACTAATATATTGACTGATTatgctgtatttattgaatttaaaaagcGACACAAATGGTACGTTAGGAAGGATTTGTTTTAGAAACACATAGGAATCCGAAGTAGACGGAAGTATAGATAGGTAGCTCGCCCATCCGTACTTTAAACTTCTACTCTGAAAGTAGTTGGAAGTTCTGTCGTGtctaatttgtgtttatttattagggGGGTTGCGTTTTACAGCAGCACAAACGctttggaaatgctgctttttACATAGTGAGCTCTCGAAATTACTGAAAGGTAAACAAGAGGTCGCGGAGAGCAGAGTTTTAGAAAGTAATTTTTAACTCACTGAAGCGATAGAGGGGCTGGGATGTAGTGGGGAGGGGTGTCAGGTAGGGATGAGGTTGTGCTTAGTTGAGTGTTTCAAAGCCAGAAAGGGGCTGATATATCAAGCAAGGGACCTAATTCTAAAAGGGCTTAAGACacacattgttgtttttagtttttttcttcttttaagtACATTTGTGAGGATGGTCttgtgaaaaaacacattagtaATCTGCTGGAATCGTTCCAAGCGTTGGGGGTCTCTCCCCAGGTCGAGTCATTCTGCAGGGGTGTCTAGGGCCCCACTTTCCTGGGAGAGAAGAACTCCAGCCCGTTTTTTTTGGAGCATGCACTGAAACCCGCGGGACTTCACACATATCTGGTATATCCATTTCAGAACTACCGCTGGGCAGCTTGACTCGGTCGTACGGGCtggtttgtttgcttctgtgtttgttcGTGCTTTGTAAGATTCGATTTAGTTGATCTGAAATGAATGAGCCACCTCTGACTCCCCCTGAGCCGAGAACAAGGGAATCGAAACATAAAGTATATCTATAGAACGTTATTAGAACCATAACTTGTAGTCAATAACTCCACCGGCACAACAGCTGGTCTGGAAGTTGCCCCAGACCGAGAGAGATAGTGGGCGACCTCTGACTCTGACCGTAGGGTTGTGCCATTCTCCCTTATGGAATCAGGTGCCGGCATTATCTGCACTGCAGTGCTTAGTGCAGAAGAGTGCCAGAGCATCCTAAACAACTCTTTTCTGTTGACAATTTTGTGTATTATCTGGAGCCCTAAACAGGCCCAGTATTATCCATACCATGATGTAGCCTTCAGCTCCTAGAAGCAGTGCTGTACTAACGCTGGACTGACTGCTGTGAGCGCAATATGCTGagtgttctttatttatttaatatatgtgtgtgtgtgtttgtgtgtgtgtatatatatatatatatatatataactttatgTTTTGCCTGTTCGTTGAATATGGCTAGTTTGTAATATTTGGGGGTAAGTTACATAggaattttttaattaagaaaacaatttaggaaaaaaaaaaaaaagatatatataaaaatacatttcagagaaaGACAAACACTGGGTAAGAAATGACCAAACAGGTTTGCAAGATTATACCTTTGATTTTGCTTCTGTTAGGAACTATCCAGGCTGTGcataaaaatgtacttaatcTCTCCTTTCGGGAATGCGTTACAAGAGCACCAAAGCTGTCACGGGTTTCTTTTTTGGAAGAAATCGCTCCAGcgtgtgtgttcatttatttaaatccttAAATGCTTGAATGATGGCAAGCAGCTTTCTCTCACATTGGTGGTTCTGCTTTCAAAAATCTGcagtttcattttgaattgTGACAGTTctcttattttaaacaaaaaatatatactaatgGGAAAAGCAGATGCGATATACTTTATCACCACTAGGTAGCAGCACAGGACTAGTTCTGACACTGTGGGTGTGTCAAAGAAAAACCTGGCATAAATCTTTATAAACTATTGTCTAACCTAAgcatatatataaagatttacAAGGTGCTTAGAAatccatcttttaaaatgtgggCTTAAAATTACTCATTACATCCCTTTGACTCTAATACCCTAAATAATAagtcataataaatacacaaactttAATAATGTACAGTGAAAAATTAGTTTATCGCTACAGAACTATACATCTCCAATCcctgtatattaaaatactatattttcATAGTTTACACTCCTAAGACTAGAAATGtgtgaaacactgaaaatgttactttttatttttaggtttggTTTTGAACTGGATGGCTACTGCTCGGGGGTGCTCCAGCGCTTGTGCTTTGTAAACACTTTGAAATACAGTGAAGGTAGTATTGGCTGATATTTTAAGATGCAAAGCACCCTATTTGGTTCTGTCGTTCTAGTTTAAACTCAGTTTGTCTGCTGTGTGGCTCTTGACAGCTGGAGGACCATGTCCCCTTCACCCAGTGTCCAATGCTCAGTTCATTTTAAAGGTGACAGCCGAGTTGTTGAGATTAGACCGTGTTTTCCAAAGGCGCAGCAGCACTTTCGGGCTGCAGTCGAGCTTGTGCAGCCACTGAGGTTAGTGCGCAAGGTTTATGCTGCGTCAGAGTGTGAGATACAGCGTCCTTGTGTTGACCCATAGTGATGCACATTTGTTGAAAGATTCAGTGAGCACAGACTCGGGCATAGGGAGAGTGGTGTGGTTGAAGCGTAGGGGTCTGAAATTCCTTCAttgctttcttctctctctttctctctccatccttggcttcttttttgtgttttttcatttttttttgcaaattttTCATTTACACCCCCTATTTACCATTCATCTCTTCTTCATTGGTCCTTCTTCCATTTACTCATTTATCAATTCTTTACATTTGATTGGTCCTCTTCTCTTCTCCACTTCTCTCTGCTGTCTCCCTTTGTCGTTTTCTTTGTCTCTTTCCAATCACCCCCCTCTccttgctctctgtctctcggcAAGTCTCTCTTCAGTCCATGTCTTTTCTTCTTGTCgttcccatctctctctcgtTCCTCTCCTCAACTGGTGAGTCTGTACAGTTGCCATTGGTTCTCCTAATTTCCCGATAATGTCTGTGAGGCAGAGTTAGTTGCTTATATCCTTTTCCTCCTAAATTCTTGATTGGGACTTTTGTCGTTGAATTATTTTTCACACGAAAGGTCTCAGATTGATGTGCGGTCCTTCAGTTGTCCATTTACACTGCTGTATATTAAACGTGTTTCTTACAGAATGCACACTGCTTTAGGTAGCACGGTAGTTAGGGAGAAAACTATCGATAGTGTTTTTCTGGCATGCGGTGATTGACATTCTCTtaagtttttctctttttctgttattttattctcgtttgttttgtaaacaccGTGAGATGTTACCAAAATGTGGCCTTGGACATGTGATTAGTTGTTTTTccttgataacatttttaaatgtttttatttctttttcttttcatttttgttttggcatGGGCTGTTTTTAACCGGTTAGGAAAGTGTTAATTCATATTGTTCTCATTAGCGATATTTAAATTACTATGCATGTTCAATGCAAAAGCGGGTGCTCTGTTTCTTTACTGAGGACAAGGGCTTTGGCTATGGAATTGTCACATATCACtggaatacaaaacatatttatgtatgtctATGCAGAGGGAGCcctgctgttttaaaatgagcagAACTGACACAACACCCGGCATAAAAAGGAGCAGGCCCAAACCCAGCACTACGTGGTAAATTGACCTGACTAGATAAGCTAAAATTTGGGCAACCCCCTGATGGGTTTTGAACTCCGAATGAGAGAAGAACAAATGCACggaatacatttgaacaattaCACAATTCATTCTCTTCCTTggtgtatatattaaaaggtAGATTTGAGAAAACCTTCAGTAGCAGTTGTCTAGTACTGGGAATATAGAAATAGACTATATCCCTCCTAGGAGCAAGGAGTAAGGAGTGGCAGGGAAAAGCTATTTGATGGACTTCCTTCTTCTTTTATCagtcttctttcttttctatagCTCTGTTCTCCCTCCTTTTTACCTGCATGTTCTGTTTCCATTCCCCATCCTTTGTGTATATTATGGTAATTTTCCTTTACtcattgttattgttctttCCTTGGATCCGCttcttcattttcacatttgtccTACAGtggtttattgtgtttattcttaAAGTCATCTGTCCAGATTGAACGTTTCTCAAGGTATTGAGAAACGGCTTCATCTGTACAGACAATTTCCCACCTCTCACCTATTACATTATACACAGCATCTGCAATTTCCCTATGTAACAACCATACATCTGTCAATGCTGCTTGCACTCTCACTAGGGgcaagaaacaaaatcaaccTGAATGCTTGAATGAACTAGATGTTAGACTACAATGTAATTAAGTTAGCATGGTCACACTTTCAGCAGAGTTTACTTATCCAAAATAGTGTTCCTGCGctgctgcattaaaaaaaggccttaaataaataaaaactatgcatGTTGTTCAAGACAAAAATGACCTTAATGTAGATTCACTCAGAAAGAGGTAGAAATTACTCATTTTCACCCTGTATTAAAAAACTACacaacttttgtttgtttcaatgtatACAAATGATGATATGACAACAAAATTGTAACATTTCTTTGCAATTGTTTTGGTCAGTGACTTTGGAAGGGCTATCCCATTGTTATCATGCTTTGTCATTAAGCATTGTTCCTCACTGTGCAACACTGGAAGCTCCTATATTTAATCTGTGCATGTAACCTTCAGAGTGCATGGATGGATGTGATTTGacttcagcaaaaaaagaaaaagaaaca
>TU177596
attgcAAAGGTGCATGGGACAGGGGAGAGTGTGGCGTAACGGGTTTCCTGCACACACTGAGCTGTACTAATCCCATTGCCTAGTGGGAGAAGACAATTTCCCTATGTTGACAAACGTGCCAAGCAGAATTTGCCATTAGGAGGCGCTGTAGGTCTCAGCTAAGCCTTGCCATGGGCTGTGAGTCCCCCGTATTCCTGAActcccctctccccttcctccctccctccctcacccccACACAAACTTTCCCTTCTGCAGTggctgagaaagagagatatgGCTTCTTCTAAGTATGTGTctcttgaaaaatacaaaatctaaatcctgaaggaaatatatatgtatgtatatatatttaaaatcctttttaaGACTCATTGAAAATGGATGACCAATAATCGTAAAAGCATGTGGATCAATGCAATCCTTTAACCTCTTACTCCTTTCTATGTCAGATGCTGTATTTTTCCTTCTTACTCtcttctctcactttctctctttctctctactTTCCTGGTTTTGCTTGAAGTGAGCAGTAAtggtttgctttcaaaacacaacacagccctTATACAGAAGTAGAATGAACTGAGATGTAGTATATAACCTACCCAATATATGTTTCTATTACTTGTCATTCCTATAATTCTCTATTTAGAGGATAAAAAACTACAATTAAATAGTGATAGGATGCTGTTTTTGTACTTTGGTAGATTCTCTTCCTGATATACAACACTTAGTAATTGCCTCTCAATATTTCCaaacacatatttttgtaattgatgccaAGGAGGATTATGTTCACATCCAATGGAGTGCTGTTGCAGAGCATTGACACTTTTTATCGGGTTAATAAAGGTCAGTCAGGTGCAATCAATTGGAAAAGAGCACGGGTTGTGTTTTGAACGATGACTGCTTCTGGCCAATGGTCAATTTCGATGTATTCGTTTTGCTTTGTTCATTCGTCCATTGTTGGTGTTGGTCTGTGTCTATCTGTGTATGTTAGCTTGAATAAGTAAGTGTTTGTGTGGGAGTATATGTGGAGTAGGGTTTCAGGTTAGATTTCAATTGTTAAGGATAATTTGACATCTACAGCTGTCAAAACAGTTCAAACATGGCCTAGTGGTAGTTGTATATTCTACTTAGGAAAGCAGTCAGATAACATTGCCAAATCAGGGCTGATAAGTATTAGCCACAAAGTAGAACTATTTAGAACTGTTGAGCTGCTTTAGAGACCTCCAGAGACCAAAGCACAGATAGGTAGATAGTTTCCCGTTCAAATCAAAGCTAAAAAACAGGTATCTGAAAGTCAAATTTCTTATCCATCTATTATGGTTACACTGTGAGAGGTGAATGTGTGAATGCGTATGTGTTTCATTGATTAAAGCTGCCTCATAGTCCCTACTATGACACAAGAAAGGGTTTTAAAGTTTATAATTGTATTCTGAAAGGTTACAAGGGCAATGGGGCTACGAGGCTTTGTGGCAGATGTACTGTTGGTGTATGTTTGTCCCTCTCACTCTcgctctccatctctctctctgcgtgtgTGTCTTCTGTCTGTTGTTCTTTATTTACTCACGTTCTCTCTGTGCTTCCTCCTGCCTCccctgccaacacacacacacacacagccctacCCGTAGTGAAACCCAAACCAGCAGAGCACACACTAACCACACCAGTCTGACACTGAAAGAAATGGAGGGGTGGATGGCCAGGTGACTTCAATTCCAGAGTGCCTTCTTAACAGGCCACAGAGAACCAGGTTTCATTCTGTGCACACGTCAAGCAAATAATGTTTGTGTGACTGTGGATGTTATAGAAGTACCTGAAAAAGATAACAACAAAATTAAGTTGAGCGCTGCCCCTGTTTGTGGCCTCAGATACATAGCACTTCACTAAGGAGCTGGATAATCAAACCACTTGtttcatttgtatgtattaaattatttggGCTTTCTGTGTGGTAAATGGCACAGAAATACATCTCAAAGAATCTGATGTAAATGGTTATGAGAGAGCATTTGGAGTGGAGTCTCTGGCCGGTGAGAGGGTCAGCCAATTGTGTCCACTAGGCCTGTTGCTGCTAGGTGCCTGTCCTCCCCTTGTCTCTTTGCCTGGGCTGCTCCTGTGGGCATTGCATACATTCCGGTTTCTGgacaagaagaaaaaggaaagccCTGTTGTTAGAGTCCAAACTAATAAAGCCATTTCCTCTTCTGCTCATGTGACTTCTCGACCCCAGAAATGCCCTATAGGTTTGCTTTTGATGTAGATTTCCTGAATGCATGCATTCCCAGTCAATATTCTCTGACATACCTTTCTGTGTTTCCAGGTCTTTTTTATGTTGGTTCTTGGTATACACTGTTGAATTTTCTCCACAGCAGGAACACATGTTTGCAGAACCGTTGCCCAATACCTACTCTTCCCAGATAcagaatttattattattattttcccatttgGTTAGGAAAGGATAAGGGATCtatgtgttaaaatgtactAGTGGCCAAAAATGACCTTTAACCGTTTGAGCCCCATGCAGTGGAGGCTCTCCGTGCATTTTTGCGGCCCTGCTCTCACTGCTAAAGAAGCTCCCGGAGGTGATCTTTGGAAAGCCCAGCTCCCGTCCCCCAGGATATAGTAACGCTGACCTGCTACAGGGTGATGATTTTCCACATATTCTGCATCCTGTTCTGTTCTCTTTGAAGACTTTTGAGTCCAGCATTTTGTGGACTGTTTCTCATTTTCctatcccccacccccaagaTTAAATTAACATCAACCATAGTATGCGCAGTCCCTTAATAAcatacagcacacagacagactccaTTCTCAGGAAAGagtttacaatcaagaggagaGAGTGTGGGGCGAGGCCATGTGTCCAGGCCTGTTCCTGGAACCGCAGTCACTGCTTTGCCAGGATCAATAAACAATCTGAAGAGAGGTCCAGTATGTAGTTCACATTCTTAAACTTTGTAAATTCCCCCCAAGTTACAGTTGGGAATTGTGTGCAAAACTCATTCCTGAATTCCCAGAATCCGGTCCCACCAAAAGCATTACCAGAAGGAGAATTGACACGGAAGAAATGACTCCCTCCTGTTATTCTCTCCAATCCCTTCTTAATGAAGATCCCTGCATTGGGTTGCGTAATCAATACTGAATGCCTGTTGCATGAGAGTCCTGTGCAGAGAATgatctttgaaaatgttttgtggatGACTGActtaacacaaatatatatacacactgtatgAACGTATATATATACCTGCCTTCAGATGTTGACACGTCTTTCTCATTGCAATGTAACCTCTCGTCCAGTACTCCTATTGAGCATGCTCCAGTGTCCACCAGCCCCGTGCCTGCTTCTCTGCCTGCCGCTTCGCCCAATCAGCCAGCTTCTGCGCCCCTGAGCCCGGCCAATCAGCTCTCGCCATCGCCTCCCGCTGTCTCTACTCCAGTAGCGCCCACCCCAAAGAGCCCTTACACTCAGCCCATGGGCCTACAACAGAGCTCCATTGAGATCCCAGTGGCCCCGCCGAAGCCCAGGGTCATCAGCANNN

Function

NR:

description
PREDICTED: LIM domain-binding protein 3-like isoform X3

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003168 True 6677 mRNA 0.43 8 13731831 13743543
TU177596 False 3575 lncRNA 0.43 2 13724910 13735516

Neighbor

gene id symbol gene type direction distance location
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 3351 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 75150 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 167663 13519114 ~ 13557247 (+)
AMCG00003167 NA coding upstream 211661 13489808 ~ 13513249 (+)
AMCG00003163 NA coding upstream 257666 13456935 ~ 13467244 (+)
AMCG00003171 bmpr1a coding downstream 36613 13780156 ~ 13793709 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding downstream 80347 13823890 ~ 13835041 (+)
AMCG00003175 NA coding downstream 146387 13889930 ~ 13895822 (+)
AMCG00003176 NA coding downstream 171562 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 276802 14020345 ~ 14028256 (+)
G141156 NA non-coding upstream 164071 13560598 ~ 13560839 (+)
G141066 NA non-coding upstream 612974 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 893804 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1438634 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1566159 12154813 ~ 12158751 (+)
G141220 NA non-coding downstream 99636 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 101203 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 102407 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 103787 13847330 ~ 13849411 (+)
G141238 NA non-coding downstream 158232 13901775 ~ 13907086 (+)
AMCG00003158 NA other upstream 614276 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 841912 12878685 ~ 12882998 (+)
G140939 NA other upstream 985143 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1046751 12371999 ~ 12678159 (+)
G140693 NA other upstream 2237026 11486191 ~ 11487884 (+)
AMCG00003182 NA other downstream 379240 14122783 ~ 14131275 (+)
G141331 NA other downstream 437237 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 540307 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 857774 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2720751 16464294 ~ 16500994 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005942 ldb3a coding NC_007124.7 CM002897.2 22476742 ~ 22552687 (+)