AMCG00003170 (ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368)


Basic Information

Item Value
gene id AMCG00003170
gene name ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13704830 ~ 13721559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003170
TCGAAGCGCCCAGCTCCGGTGCCCACAGCTACCCCTAGAATGGACTCTCCCATGCCCGTGATCCCCCACCAGAAGGATCAGTCAGTCCAAATCAATGGCAGCCTCTCAGCCTGCGCTACAGCATCACGGCCACTAGGGGCATCCAACAAGACAAACTCCTACTTCTACAGCAAGCAGGAGGTCAACCAGACCTGTAACGTTTCCATTACTAAAGCCGGAGCCCTCTCTCCCGCAAAGAGCCCTGTGTCACTGGGCCCCATAGGCAAGCTAGCCGGTGGGCAAAAGGGGCAGTATAACAACCCCATAGGCCTGTACTCTGCAGAAACCATTAGGGAGATGGCGGAGGCTCGGGGAGGAAGCAGAGGAGGACGGGCCTCCAGCTTGGGCCTCCTCCAGGGTAGCACTGAGTATGTCCCTAGTTTCAACCCCAGCGTGCTGAAGGATTCGGCCCTATCCACACATAAGCCCATCGAGGTCAAGGGCCCGGGCGGCAAAGCCACTATCATCCACGCCCAGTACAACACCCCCATTAGCATGTACTCCCAGGACGCCATCATGGACGCCATAGCCGGCCAGGCCCAGGCCAGGGGCAGTGACATCTCCAGTACGCTCCCAGTTAAAGACCCTCTCGTAGACAGTGCCTCCCCAGTCTATCAAGCTGTCATCAGGTCCCAGGAGAAAGGTTATGTGCCTGAAATGGAGGAAGGGGCTCGCCGGGCTGGAAACCTCCAGTCCAAGTCCTTCCGCGTCCTCGCCCACATCACAGGAACGGAGTACATGCAAGACCCAGATGAGGACGCTCTGAGGAGATCAAGGGAAAAGTTTGAAACTGAAGTAAAAGGCCCACGATTTGCTAAATTGAAAAACTGGCACCATGGCTTGTCAGCGCAAATCCTTAACATTCAGGGTTAATTGCCCACGTGTAAAGGATAGGATAAAAGAGAGAGCTTTAAACTCAGAAATAAGAGGAAGCAGTAGGAATGCAAGTGTAAAAGAGGAGTATTTAGCACCTGTAATGTGAGTTAAAAAGAGTAGAATAGCCAATACGAAACTATGAAAGCAGTTTGCTGAGTGCCTGTCGTCAATTGTTACATGTCTCTGGTTGTGTATCCCTCTGCTGTAATGTAGTTTTCAGCTCTTTTCtgttaaatcacttttttcttttttttttttttttctttttggttgttCTGCTGAACCATGAaagcaaattataaaaacaagaaataacatAAATTGAGCAAAAGCATATTTAGTGACTATCTACACCCCCctctttttaataatattgatgataatataataaaagcGAAGTCACTTTAGAAACAAAATTGAACCAACTGGATTGtcaggttgttttctttgcttctgTTTGGAACGTGTGGTATTGggtaaatttgaaaaataaagaaggcCATATTTCCTTCCCATTCTATAGCTTTAACATAGTTTTTGCCACATAACAAATCTCGTCCTTTCCTGTGTAGTTTCTCACTTTCTCTTTGCATAGGGGTTGTGATCTCTAGTCAAAGAGCAGTTTTTACTCGGAGctcagtcattttaaaatgagcagccttgaTCCGGAGTAGGCAGGAGGCACAAAACCAAGCACACGAGGGAGCAGATGCTAACACTCATATGTGGCAGCTTGGTCTTGTGCCTCATGCTGGGCCTGAAGCAGATGCTCATGTTGAAGGCCTGTATTTACTCTGTGGATGTAGCATAGTGGGAAAACTGGACAGTTCCCATTTATCTGTGGCTGCTCATCTTAATACATACAGGCTCTGTGCTAGAACACATACCCCCCCCAGTATCTGAAAAGAATCACAAAAGAtggctgtgttttttatttttgaagtcagttatatttgtattattattatggtcgATCATGCTTGTCAGGCATTGACTATGTCAGCTAATCTATTACACAAAAGCCACCCAACAGCTTGACCATGTAAACGGTCCCTAAGATAAATGCGTCAGCACTAAAGAGAATAGCGATAATGTTTAACCATAAGCATATTGGATTCAGACCATAGCACTCATTTCAACACTTCCAATGAAAGACTGACAAACAGGACTGGGTCCAGTATTTCTTGTAGGCCTGAGTTAGAGTCCAATAAGCATCTCACTCCTTCAAGGTTCAAGTGTCATCTTTACAATGTTAAAGCTATAGAAAAGTAGGAGAATTGCTTTCTTGATAGTTTTTAGAAAAAGTAGGCTTCAAAAAGTGCCCTGCTTAATACAAGAGATGGACTATGAGATTTCTTGGCAAATTGTGTAATAATGTGAACTAAAATTCAAGGATCCCCCTTTTTTCGAAAATGACAGTGTGTCATGATTCCTGAATGTCaaaattgtgtatgtgtgctgcaaCATGTCACCCGGAAAGATGGACTTATAAAATGTGGGTTTATTGAAAAGCGTTTGATATTTTGAGTGTTCCTTTAATGAATGACATTGTTTCTTAAGGCCCTTAGGACTGCAGGAAGACTGTTTACTCTCCTTTGTTTCCATGGCAAACCACCATTTTTGGAGACCCAAATGTGTTCAGTTGAAGCTTTGGCGCCTGCTGTGTACGTTTATTTGGAGTGGTGAGAATACAGTGAAGGAGAGCTGGACTGTGTTTCGTATAATTAGGTGATGTTGGTGTCTGTACTGAGGTCTGGTTTCAGAAACTAAGACAATGTTCATTTAGGTAGGCTAGTTCAAGCCCAACGCTAATTGAGGTTCATGAAATCAGCTATGAGTGTTCAAAAAGATGATCAGATAGACTTGAGCTTGGGTCTTGAGTCTGGCAGATGGCTAGAGCTTAGGGCTAAGAATCGGGTCACTGTTGTGTCTCGTTGGATTTTAATTCACTTTTGATCTTCTTAATAAGAGAAGTGCGTCATCTTTCTCCGAAGATAGTAACTTTtgattaaaagaaagaagaaatcaAGGTGACAAATGGcgcctttctctctctgtctctcactttctctctttctgagAGGCTTTGCTACAGGAAATGCCAGGATCtatttttgattgtgtttcCAAGCTGTTGCATACAGTTATATTACAATCTTAAGAGTCTTTTagagctgaaaaaaataaatgaaatctcTGTACTGGTGTCTTTAGCAGACAGATGCCGTCCACTAAAGTAGTATGGATCCTATAAATTGTCCAACAAAACGACAAGCCAGAAACAATTGTTCTCATTCACAGTTATTACCAGGATTAATTGGCAATTAATGACTGGATGTCAGTTCTTTAACGCAATACCTTAACAAATGAATGGGGCTATAGATCTGTAATAATTTAACACCCCATTACTCCATTTAGGCCTGAAGTCTAAACAACAGAACATCTCATTAATAGATGCCGGATATAATAGATTTAATTTAGTCAGTCTATACGGATCCACCACTGCAGATTGACCAATTTGTTACCAAGCAGATCCTCATTACCAACTCAAAAGGGTTATATTGGATATTGGATattggttatatttttattcttcctgAATCCaacatgaaatgtgtgtgtagtctgtctgtcagctaaaaaaaaacaaaaaaaacctatgGTTTCACATCCCGTTGTGTGTAGTGTTATTAGGGGATTTTTACAGAAGTGTGTTTAGTATCAGTTTCCCCTTGGTGTGCGCTGTGCTCCATGAACACCAAACATCTGTTGTTTGTACTGAAAACAGAGGCGCTGTACACAGTCCTGGTAGTCTCAGGCTGAGGTTGGACTCCTTGAACAGAGGTTAGGTGAAGAGCGAGTATATGTCCGTGCATGTCCCGGTGTGGCCCATATGAAAACACAACTGCAAGGGCAGCTGGGGACGGTGTCTTGGCCTGGCTGTGGTCATCAGCAGGCAGTTAAAGTAAAAGGGCTGCAGCTCTTCTTATTAAATAGCAGATTTTTTTTAGTGTcgcatttttattaatgtggaTCAAACCATGTTAGTCTTTAACAACGCCTTGGGCCGATGTAAGGTGCTGTACAGTCAAGCCCCGGTAACATTGTTCATGAGAGTTTAATCACATTGAAGCCATAGAGGACGGATAGGAACCAAAATGGTGTGCGGTGAATTCTGGGTAAATGCGGTTCAAATATAGTGGGGTAAAGCATGGTGAAAAAGTGAAATGGAAGGGAGTTTTTGAGAGGTGAAGGTAagccatttttcatttaataaagttATAATTTTTATAGCTTCACTGCGTCGTAACCCGAGGTGGGTGTGAGTCCAAAGGAGTGGTGGCTGGAATCCAGCAGAACAGCAACAGCGGTTTGTACCAGCCCAACTGCAGttgtgtttttagtgtttttccaTGGGCAGGCACTGCTTAAACTATGGGAGAAGGCTCCTGTGACATAAAATGTGTGGAAACCCAGGGCAAGTCTGGAAATTGCAGTCTGAGCCCAGCGCTGGGCTCAGTGTTTAAGTGGAATATGAGGGGCAGCAACATGAAtgctctctgtctgttttctctttcccttcTTGTGAAAGCCGCCTGGCTCATTTTTAGCTCGGATAGTGTAGTGAAAAATTCCTTTGGCAAAAGACGCTTTGCTGACTGCCTGTCACTGAGTTGATGACCTAATTTTAGCTTCAACTCCATtcatgagagagagggagagaaaaagagagagtgtgtgtgaccCTGTCTCCCTGGTTTAAGCATCACCGTGGTTTAAAGACATCAGCGTAGCTCccggaagagggggaaaaaaatgaacaaagtaggatgataaagaaagaaaaaaactaataaaaacaactcACAGCCAACTATAGAAAAGTATAATTGTGTGCTCAACCGATCTCTCTTAGCTTTCCCTGTGGAAGTAGAGAAAGCCAGGCTTGTGGCCAGATGTGCTCCATATTACACTCTTTTAAGATTTGAAAAGACATTGCTCTTTCGAGACACAATGATTCGTAGATTTGGTCCTAACACTTGCTATGGAAAAGGACTGGGCACAAGCCTGTGTGGTACACTTGAAGCAATGCAGACCCAGCCCTGTGAACTAATGAGGGGTAGGGAGGGGGTGGTGGGAGAAAACAGGGATGCTGAGGAGATCTGAGGGATGTTTGCATGCAACTCTCTACTTCTGCTGTAGCTTGGAAATCACTCTGTATATAGTGTCAACGGTTCTTCTGAAATaaaggattcaattaaaatgacccCTCGTTGTGGCTGTTGTGAAGGTAGCTGAGATTGTGCTTTAACTGAttcattacaaaagaaaaaatgactgcactaaataaatacacacacttcTAACCATCTTATTTAGAAGCCCCCTTCCCccaaaaaataagttaaactaCCACTTTTTATGTATActttatgtatgtttaaatatgcaCAATTCTTTacaaagattgttttaaaataaattaataacataaaatacctgaaaat

Function

symbol description
ldb3b Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Orthologous to human LDB3 (LIM domain binding 3).
ldb3 Enables cytoskeletal protein binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to act upstream of or within sarcomere organization. Located in Z disc and cytoskeleton. Implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Biomarker of myotonic dystrophy type 1.

NR:

description
LIM domain binding 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003170 True 5423 mRNA 0.43 6 13704830 13721559

Neighbor

gene id symbol gene type direction distance location
AMCG00003169 opn4a coding upstream 55070 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 147583 13519114 ~ 13557247 (+)
AMCG00003167 NA coding upstream 191581 13489808 ~ 13513249 (+)
AMCG00003163 NA coding upstream 237586 13456935 ~ 13467244 (+)
AMCG00003162 NA coding upstream 250453 13433314 ~ 13454377 (+)
AMCG00003171 bmpr1a coding downstream 58597 13780156 ~ 13793709 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding downstream 102331 13823890 ~ 13835041 (+)
AMCG00003175 NA coding downstream 168371 13889930 ~ 13895822 (+)
AMCG00003176 NA coding downstream 193546 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 298786 14020345 ~ 14028256 (+)
G141156 NA non-coding upstream 143991 13560598 ~ 13560839 (+)
G141066 NA non-coding upstream 592894 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 873724 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1418554 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1546079 12154813 ~ 12158751 (+)
G141220 NA non-coding downstream 121620 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 123187 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 124391 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 125771 13847330 ~ 13849411 (+)
G141238 NA non-coding downstream 180216 13901775 ~ 13907086 (+)
AMCG00003158 NA other upstream 594196 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 821832 12878685 ~ 12882998 (+)
G140939 NA other upstream 965063 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1026671 12371999 ~ 12678159 (+)
G140693 NA other upstream 2216946 11486191 ~ 11487884 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 3351 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 401224 14122783 ~ 14131275 (+)
G141331 NA other downstream 459221 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 562291 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 879758 14601317 ~ 14605548 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location