AMCG00003171 (bmpr1a)


Basic Information

Item Value
gene id AMCG00003171
gene name bmpr1a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13780156 ~ 13793709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003171
cacacacacactccccttTCCCATTTCTACTGTCTCTGGCTCACGCTGCGGCCAGGACTGGGggactgctgtgctgtgtaaaCTCTCCAACGCCCCCGAGTCAAACCCGCTGAGCTCGGCACGGTGACAGGGTTCTGGCTTCCAGCTCCACGCTGCGAGAATGACGAGACTTCCAGTTTACATCACGATTTTAGGAGCCTGCTTCTTCCTCGTACTCAAGGCTGAAGGCGGTCACAACCCAGACCACATGCTCCATGGCACGGGGGCCAAATCCGGATCCGACCCCAACCGGTTAGCGGATGGGTCAACGGTGTCTCCTGAAGATGCCGCCCGCTTCCTGACCTGCTACTGCTCTGGGCACTGCCCCGAGAATGCCAACAACAACACCTGCAAGACTAATGGCCAGTGCTTTGCCATCATCGAGGAGGATGAGCACGGGGAGTCTCTGCTGACCTCGGGCTGCATGAAGAACGAAGGCTCAGATTTTCAGACTCCCCCCGAGCTCAGACGAGACGTACCATCGAGTGCTGCCAGACCGACTTCTGCAATCGGGATCTACAGCCGACGCTACCTCCTCCCCTTCCAAAAGGTGCAGATCTCGATGATCGGGGCCGCATGgcacaaaaataacaaaggaCAAAGCTTAGAGCAAAGCCCTCTCTTTGGCAGCGCACACTGGCTTGCCTTCTTGATATCGGTGACAATATGCTGCTGTGTGCTGGTCGTCATTACTGTCATCTGCTATTATAGATATAAATGGCAGACGGAGAGGCGGCGCTATAACCGAGACCTGGAGCAAGACGAGGCCTTCATCCCAGTGGGAGAGTCGCTGAAGGATCTGATTGACCAGTCCCAGACCTCTGGCAGCGGCTCTGGGCTGCCCCTGCTGGTGCAGCGGACGATCGCCAAGCAGATCCAGATGGTGCGTCAGATTGGGAAGGGACGCTACGGGGAGGTGTGGCTGGGCCGCTGGCGGGGGGAGAAGGTGGCGGTCAAGGTGTTCTTCTCTCGGGAGGAGGCCAGCTGGTTCCGAGAAACCGAGATCTACCAGACGGTGCTCATGCGGCACGAAAATATCCTCGGGTTTATTGCAGCGGACATCAAAGGCACTGGGGCCTTCACCCAGCTCTTCCTCATCACCGACTACCATGAGAACGGCTCCCTGTACGACTTCCTGAAGTTCACCACGCTGGACACCAAGTCCCTGCTCAAGCTGGCCTACTCGGCCGCCTGCGGGCTCTGCCACCTGCACACCGAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGCGACCTCAAGAGCAAGAACATCCTGATGAAGAAGAACGGCACCTGCTGCATAGCTGACCTGGGGCTGGCCGTCAAATTCAACAGTGACACCAATGAGGTGGACGTCCCCCTGAGCACTCGCGTGGGGACCAAGCGCTACATGGCCCCGGAGGTCCTGGACGAGACGCTGAATAAGAACCACTTCCAGGCCTACATTGTGGCCGACATCTACAGCTACGGGCTGATCGTCTGGGAGATGGCGAGGCGGTGCATCACGGGAGGCATCGTGGAGGAGTACCAGCTACCTTACTATGACATGGTGCCCGCAGACCCGTCCTACGAAGACATGCGGGAGGTGGTGTGTGTCAAGTGCCTGCGGCCCGCCGTGTCCAACCGGTGGAACAGCGACGAGTGTCTCAGGGCGATGCTGAAGCTGATGTCCGAGTGCTGGGCCCACAATCCTGCCTCCCGCTTGACGGCGCTGCGAGTGAAGAAGACCCTGGCCAAAATGGTGGAATCTCAGGACATCAAAATATGAGGACGCCACCGTCTcgccaccaccccccccaccccccaccacttCCTCTTCCTGATGAGAGGACCGTTAGTGTTGATTATGTTGtggtttgttcattattgctcAGCAGAGAGGAGACTATAGAGAAAAAGCATGAGAGAGCAGGGCGCGGAAATGGACCCTGAAAATTTCACTGGCTTCCTGCTAGAAAGAGGCGACTGAGACGGACAGGTCCGCCCCCACGCCGCCCCGCGCAGCCCGGCGCGCTGTGGGCCAGGGGCTCGGAGCAGCGCCGGACAGCTCTGCACGCGCTCACAGGATGGGGTCTGCTCTCCTCTGGTCCTCGACTGTAGACACTGGCAATAGAGCCGAACTCCTGGGATTGTGCTTTCTGTGAAAGCCGCGCTTTGCGTCACGTGAGATGAGTCGCCCGCTGTCTATCCGAAGAGCGGAAGGAAGGATGGAAACTTTCGAAAGGAGTGGAGATGTGCACATGAGATGTCACCcgccaattttatttttatgaattattgtattttattttattttccactggtttATATTCAAACTGTTTTGTTGGTGCCAGGACAGATTAATTTTCCTGAcgtattcaaatgtatttccgGCTTGTTTAATGAACATACAAAGACATTTTCAAGGAAGGTAACAGGaatgaatttgtatttaaaatgtaaataagtaatATGACTAGATACTGTGCCTATATAAAGACTAACTATATGCTGCATACTTGTTGATGTCCAGCTGATTTTCAGCATGCATTTAATGGCAGTGAGTTTTGGCAGtccagaaaaaagaaaacttagagagaaaaataaatctctccgGATTTGAGAGACCCTCCTTCACTACGAGTTAAAAGCCTCTAGTTATGAAATAATGCCTTATATTTAAATCAAGCTGTGATTCTCATGAGATCTTTGTCACTTTGTATCACACCAATATTGTCTGGAAAAGATAGTCtcaagtgtatttaaaaattaatcgTAGTcctatggattttttttaaaccttgtcTTTACATGTCACACcgtggtgtttttatttgtccgTTTTGTGGCGTCTATGCAGTCTGTTTCAAGCTCAACGTGGGGGGAGGAAAATAAGCCAAAACTTGCAGcctttaaaagaatatatatattactacaaTGTGtgtacagttttatttaaacatcagTGCTGAAATAATTCAGGCCTAGGTGGCAATAGGCTAGGACAGCTGAAAGGATGATTCTGGAGCTAAAGCTTCCAGAACTCGCATTTGGTCTTTTCATTTGCTTTCTCCATTTTTGTACCTGttccacaatatatatatatatatatatatatatatatatatatata

Function

symbol description
bmpr1a Enables several functions, including ATP binding activity; SMAD binding activity; and protein homodimerization activity. Involved in several processes, including positive regulation of osteoblast differentiation; positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and positive regulation of vascular associated smooth muscle cell proliferation. Located in external side of plasma membrane. Colocalizes with caveola. Implicated in hereditary mixed polyposis syndrome 2; intestinal disease; and juvenile polyposis syndrome. Biomarker of pulmonary hypertension.

NR:

description
PREDICTED: bone morphogenetic protein receptor type-1A

GO: NA

KEGG:

id description
K04673 BMPR1A, ALK3, CD292; bone morphogenetic protein receptor type-1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003171 True 3157 mRNA 0.52 11 13780156 13793709

Neighbor

gene id symbol gene type direction distance location
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 58597 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 130396 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 222909 13519114 ~ 13557247 (+)
AMCG00003167 NA coding upstream 266907 13489808 ~ 13513249 (+)
AMCG00003163 NA coding upstream 312912 13456935 ~ 13467244 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding downstream 30181 13823890 ~ 13835041 (+)
AMCG00003175 NA coding downstream 96221 13889930 ~ 13895822 (+)
AMCG00003176 NA coding downstream 121396 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 226636 14020345 ~ 14028256 (+)
AMCG00003179 NA coding downstream 244803 14038512 ~ 14048879 (+)
G141156 NA non-coding upstream 219317 13560598 ~ 13560839 (+)
G141066 NA non-coding upstream 668220 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 949050 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1493880 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1621405 12154813 ~ 12158751 (+)
G141220 NA non-coding downstream 49470 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 51037 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 52241 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 53621 13847330 ~ 13849411 (+)
G141238 NA non-coding downstream 108066 13901775 ~ 13907086 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 36613 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 669522 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 897158 12878685 ~ 12882998 (+)
G140939 NA other upstream 1040389 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1101997 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 329074 14122783 ~ 14131275 (+)
G141331 NA other downstream 387071 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 490141 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 807608 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2670585 16464294 ~ 16500994 (+)

Expression


Co-expression Network