AMCG00003172 (LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219)


Basic Information

Item Value
gene id AMCG00003172
gene name LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13823890 ~ 13835041 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003172
ATGGTGGCAGCAGCGGAGAAGACCAAGCAAGGGGTGGAGGAAGCTGCCGCGAAAACCAAGGAAGGGGTCATGTATGTAGGTTCAAAAACGAAGGAAGGAGTCGTACACAGTGTAAATACAGTGGCTCAGAAGACCACCGAACAGGCCAACATCGTGGGTGATACAGCGGTAAGCGGTGCCAACCAAGTGTCTGCGAAGACAGTGGAGGGATTGGAGAACGTGGCAGCATCGACTGGCATGtctgcctctctctgccgCAGTGAGCCCACCTCTACGGTGTCCCACTGCGTCCGAACGCCCTTGAGAAagagatgggggagagagagagagcacacacagagacagagcgGGAGGACTTCTCTCGTGCAGCAGAGGGAGCTGTGGAGCAGGCTGCAGATGCTGGGGAGCAGgtgggtTACTAGCCAGTGGGTTACTAGCCGCTGGGCTACAGCAGCTCAGTCCCTCTCCCCAGCCGAGCGGGGGCTCCACCGTAGCTGCCCCCCCACCTGA

Function

NR:

description
PREDICTED: synuclein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003172 True 510 mRNA 0.59 6 13823890 13835041

Neighbor

gene id symbol gene type direction distance location
AMCG00003171 bmpr1a coding upstream 30181 13780156 ~ 13793709 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 102331 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 174130 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 266643 13519114 ~ 13557247 (+)
AMCG00003167 NA coding upstream 310641 13489808 ~ 13513249 (+)
AMCG00003175 NA coding downstream 54889 13889930 ~ 13895822 (+)
AMCG00003176 NA coding downstream 80064 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 185304 14020345 ~ 14028256 (+)
AMCG00003179 NA coding downstream 203471 14038512 ~ 14048879 (+)
AMCG00003186 zgc:154058,LOC106579282 coding downstream 234678 14069719 ~ 14080330 (+)
G141156 NA non-coding upstream 263051 13560598 ~ 13560839 (+)
G141066 NA non-coding upstream 711954 13111737 ~ 13111936 (+)
G140961 NA non-coding upstream 992784 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 1537614 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 1665139 12154813 ~ 12158751 (+)
G141220 NA non-coding downstream 8138 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 9705 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 10909 13845950 ~ 13846154 (+)
G141226 NA non-coding downstream 12289 13847330 ~ 13849411 (+)
G141238 NA non-coding downstream 66734 13901775 ~ 13907086 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 80347 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 713256 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 940892 12878685 ~ 12882998 (+)
G140939 NA other upstream 1084123 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1145731 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 287742 14122783 ~ 14131275 (+)
G141331 NA other downstream 345739 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 448809 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 766276 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2629253 16464294 ~ 16500994 (+)

Expression


Co-expression Network