AMCG00003175


Basic Information

Item Value
gene id AMCG00003175
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13889930 ~ 13895822 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003175
ATGACAGCCAGACCTAAGATCCACCTGTTTCTTGGTGCCCCCATAATCCCTGTGCAAGACGCCCAACAAGGGTGCCCCAGTCAGTGGAGGAAAGTGGAGCTGCAACTGCAGGGAGGGAGGCTCCAGCCTGCCCTGTTATGGAAGGACCCAGCTGGCGTGTGTGAGGCCGGTGGAATCCAAAGAGAGCAGCGAGAGGGGGATGGTCCCCCAGTCACTTCCTCCACAGTACAGGCTGGGACCTCGGACAGTGTTCATCTAGCCAACGAGGGCTTGGATCGCCTGAGCATCGACAGTGACCAAATTCCCAACGCCACGGACGCTCCGTCTGGAAGCAGGGAGGCAAAGAAGGAGGTGGAGCTTGCAGGGGGAGGACGGCCTAGCCCACCTCCTACGGACACGGCCCCTTCCCAAAGGAAGCGCCTAGCCCCCAGCTGGCCAGGACTGTCTCCCACTGCTGTCAGGGAGTACTTGGACAGCTGCTTCCCCAGCCAGGGTGAGGGAGACTCTGAGGCAGGGAGGACCATGTCTGTAGAGACGGAATACCTCAGCGTGTGGACGGTGAGTCAGGCCCTGGTTTTGAAGGCACAGCTGGGCACGGGGAGGGATGTCCAAAGGCAGCAGGGAAGGGAGGCTGCGACCAGCAAGGACATGATATCTGTAGCGCAGGCCTCCAAGCACCCTGTTAGCCCGGGATGCTCCCCGGAGCTTTATAGCCCCTGCAGCAACCCAAACCCTACTGGAGATGAGGCCACATTGACTGAGGAAGGCTCCACAGAGTTGTTCGACACCTTGGGTAAACCTCAAGAGGAAGGGGGGGTGGTGATAGAAGCCACCTCTGAAGGGCTTCTCTGCTCTCAAGGGCATTGCCTCCCCGAAGGAAGCAAGGAGGTCTCCAAACAGCCCCGCCCCCAGTGCAGATCTCCCGGCTCCCCGGCCTCAAAGAAGAGTAGGGCTTCCAGAGCTTGGGGACAGCGGGAGCAGACAGGGACCAGGGGCCCATGCCTCCCTGCCACCCTGTTGACAGGCTGTGTGCCGAGAGGGGGGCGGTACCGTGTGCTTGTGTGCGTGCTCTACCCCTGCCACCTGAAGGAGATTAAAGCTAAATCGGGGACGTCGGCAGGTTCCTCAGTTCCCCTGGCAACCATCGTGGTGACCGACCAGTCGGGAATGGACATGAAGGTGGTGTTGTGGAGGAGTGCAGCGTTCTGGGCCCTTACTGTGTATCCTGGGGACATCTTGTTCATAACAGGTACAGAGTCTACCTACCAAACCCACCTGCTCAACGTGGGCCGGGTCGGCGAGACTTCCAGACTGCAGGTGCCAGAGGCTGTGGCAGAGGGGGCCCTGGAGGATCTGTGCAGGTACCTGACCCACCGACACCCCTTGCTGCTGTCTCTGGCCCCCCGAGCCCCCCAGGACCCTACCGACATCCCCTACGCCCGGCTGGGCAAGCTGCAGCCCAACACGCTGGTGCACGCACTGCTGAGAGTCACACACACCTCCTTGGTCACAGAGTCGGAGGGCTCCTCCAGGACGGGGGTGGGGCGGAAGGCTGTGCTGGTGGTGGAGCAGGGCAGCCAGCAGGGGACCCTTCTGCTATGGGGATCTGCCATGGCTTGGCTGAGGAACATCCACAGGAACAGGGGTGCAGTGTGGGAGTTCCGGGTGCTGCTGGTGAGAGGCAGTGTGGCGTCTGGGGCTATGGAGCTGCACTCCACGCCCTGGGGGTCCTGCCAGCCGCTCTTCCCTGATGACTGCAGAGCCCTGGAGTTCCACAGCTGGGCTCGGCCTGCTCCAGCCTTAGGCAGCCTGGAGATAGACCTCCACACCCTGCTCTCCCAGAGACACACAGGGGACGTGGAGGTGAAAGGTCAGGTTGTGGCACTGCAGTTCGGGAATACTCAGGACACCCTTCTACGGATGGACAGCCACACCCCCTTGCAGAGGATTGTGGGAGCCGTGACCAATGACATCACCTTCCATGGGTGCGGGAGGTGTGGCTCAGAGCTGGGAACTGACCACAATGGGATCTACCGGCCTTGCTTCCCCTGCCTGCCATACCGCGGTGTCAGACACTACTACAGGCCAGCGCTGCTGACAGTGAGAGACGTGGACAGTGACATCTGTGTCCAGGTGCCACCAGTCCTTGTGCAGAAGATGCTGCTGAATATCCCCCCAGAGTTGCTCAGCAAGACTGTTGTGCCATCCTCAGATATGACGTTTGGACAAGTGGTGGTCGACCTATGTCACTCTCTGCTCTCCCGGCCCCTGGATACCTACCAGCTGACTCTCCGCAGCCACTTCCTGCTGGATGAGAACAGTGTGCCCATCCAACAGGACTTCCTCCTCCTGGACTTCCTCCCTCAGCTCTGA

Function

GO:      GO:0008536

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003175 True 2373 mRNA 0.61 8 13889930 13895822

Neighbor

gene id symbol gene type direction distance location
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding upstream 54889 13823890 ~ 13835041 (+)
AMCG00003171 bmpr1a coding upstream 96221 13780156 ~ 13793709 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 168371 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 240170 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 332683 13519114 ~ 13557247 (+)
AMCG00003176 NA coding downstream 19283 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 124523 14020345 ~ 14028256 (+)
AMCG00003179 NA coding downstream 142690 14038512 ~ 14048879 (+)
AMCG00003186 zgc:154058,LOC106579282 coding downstream 173897 14069719 ~ 14080330 (+)
AMCG00003185 NA coding downstream 196086 14091908 ~ 14093014 (+)
G141226 NA non-coding upstream 40519 13847330 ~ 13849411 (+)
G141224 NA non-coding upstream 43776 13845950 ~ 13846154 (+)
G141222 NA non-coding upstream 44978 13844746 ~ 13844952 (+)
G141220 NA non-coding upstream 46415 13843179 ~ 13843515 (+)
G141156 NA non-coding upstream 329091 13560598 ~ 13560839 (+)
G141238 NA non-coding downstream 5953 13901775 ~ 13907086 (+)
G141245 NA non-coding downstream 54100 13949922 ~ 13950128 (+)
G141248 NA non-coding downstream 85015 13980837 ~ 13981099 (+)
G141249 NA non-coding downstream 85553 13981375 ~ 13985426 (+)
G141282 NA non-coding downstream 157647 14053469 ~ 14053682 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 146387 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 779296 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 1006932 12878685 ~ 12882998 (+)
G140939 NA other upstream 1150163 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1211771 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 226961 14122783 ~ 14131275 (+)
G141331 NA other downstream 284958 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 388028 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 705495 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2568472 16464294 ~ 16500994 (+)

Expression


Co-expression Network