AMCG00003176


Basic Information

Item Value
gene id AMCG00003176
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13915105 ~ 13937723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003176
GCAAGATCGGCGGCAGACAACGCAGACAGCTTCTGGATTGTGCGGGATTGGACAGCTGTTGATAACAGCCCTTAAACAAATCTCTAACATTGCAAGAAAGGGGAATACCGTCCCGATATCTGATGAAGCGCCGCTCCATGGATGTCCGCGCTCGGTGAGGATCTGTCAGTTGCTGTGGAAGCGGTCGGTACAGCAGCAGCGCCTGCACGTCTGCACTCGGACGGGCTGAAGTTACAGCCGCAAGTTTGCGCAAGTTTACGTATCCGGCAGTGAAGAGAACGCCAAGGGAGCAGAGTCTTGCAGAGCTGTGTGCTGTATGTTGCTGTAACAAGAAACCATGTCTGTAAATGTGAGATTTGACGAACATCAGTACATTATGGAGCCTGCGGAGTTCCTGAGTGATATGGACTACCCAGTGTTACCGCAAATGAACAATATAAATGTCAAAACGGAGCCTTACCTGGAGACAGCTCATGGCCCCTATCTGCAGATCATTGAGGAGCCCAAACAGAGAGGATTCAGATTCCGATATGAGTGTGAGGGGCCCTCTCATGGGGGGCTCCCGGGGGCCTccagtgaaaaaaacaagaagaccTACCCCACAGTCAAGATATGCAACCATGTGGGCTATGCCAAGGTGGAGGTGCAGCTGGTGACACACAACGACCCGCCCCGCGTCCACGCCCACAGTCTGGTGGGCAAACAGTGTAACGACAACGGGGTGTGCAGCGTCACCGTGGGGCCTAACGATCTCACAGCACAAGGCGTGGTGGACGTCCTGACCAAGAGACTCaaagaggagaagaagaagctGAAAGGAGCAAACTACCACTTCACAGATACGGAGGAGCAGCAGATCAGCACCGAGGCCAGAGAACTGGGCAAGGTGATGGACCTCAACGTGGTGAGATTAAAGTTCACTGCGTATGTCCAGGACAGTGAGGGCGGGTACACCCGAGCCCTGAAGCCGGCCATCTCCAACCCCATCTACGACAGCAAATCCCCCAATGCCTCCAACCTGAAGATCTCACGCATGGACAAGACCTGCGGCTCCGTGCTGGGGGGGGACGAGATATTCCTGCTGtgtgacaaagtacaaaaagATGACATCGATATCCGTTTCTACGAGGAAGAAGATGACGGAGGCTGGGAAGCTTTCGGAGACTTCGCTCCGACGGACGTCCACAAGCAGTACGCCATTGTGTTCAAGACCCCTCAGTACCACAGGCTAGAGATTGACCGCCCCGTCACAGTCTTCCTGCAGCTTAAGCGACGGAAAGGAGGCGACTGCAGCGAGCCCAAGCAGTTCACCTACGTGCCACAGGTCCAAGatAAGGAGGAGGTACAGCGTAAGAAACAGAAGCCCTTGCCTCACTACCCCGATCACTGGCGCGGACCGACCATGGGGGGCTCAGGGGGACCAGGCCGGGGCCCGGGGGGCTTCGGCtcaggaggaggagcaggggGGGACCAGTATTACCCTTACAACCAAATGGACAGCAACTTCTTTGGCCAGTTTGGGGGGTTCCAGGGGGGAGCTCAGATGTCCGGCTCAGGCCATCAGCCTCAGGACAATACCAGGAACCAGCAGAACGGGGGGCCGCCAGGGGGGGTCTCCCTTCAACAGCTCCTTCAGTTCGCCGCCACGCTCCAGATCAGGGCGATGCAGGCAGCCAGGCGCTCCGCTGGGGCTCTGCTCGACTACTCCACCACGGGGGACGTGAGGATGCTGCTGGCCGTGCAGAGGCAGCTGTGCGCCACCCAGGACGAGAACGGAGACACTCCTTTGCACCTGGCCATCATCCATCAGAAGCCAGCAGTTGTGGAACAGCTGGTCCAAGTCATCGTCAGCATCCCTGAGCAGAGCATCCTCAACACCCACAACCGCCTGCTGCAGACTCCTTTGCACTTGGCAGTGATAACCAAGCAACACAAGGTGGTCGACTTCCTGCTGAAGGCAGGGGCTGACCCCTCCCCCCTTGACCGCTATGGCAAGTCTGTGGTGCACCTGGCCGCGCCCATGGCTGACGAGAGCATGCTGAGGATCCTGCTGAGTCACCTGAGCGAGCGCCACGCCCACCTGCTCAACACGCCTGACTACAATGggATGTACCCAGTCCACCTGGCCGTGCGCCGGGGTGGGGAGCGCTGTCTGAAGATGCTGGTTGAGGCGGGGGCCAACGTCAATGCCACGGAGCGCAAGAGCGGCTGCACCCCACTCCACCTTGCTGTGCAGCAGGAGCACCTGGGCGTGGCCTGCATGCTTGTCACTGAGCTGAAGGCGGAGGTCAATGTGAGCACTTTTGGGGGGAACACGCCTCTCCACCTGGCCGCCAGCAACAGCTCGCCtgtcctgtgctctgtgctcatCGCCGCAGACCTGGCCAAGTGCCCAAAGGCCACGCTGGGGAAGCTGTGCGGCATCATCAATGCGGGGCACATCCAGTGGAAGCAGCTGGCAGAAAAGCTGGGCATCCTGACGCTGGCAGAGCTATACCAGGAGAGCCAGTCGCCCTGCCTGAGTCTACTGAAGGTGTACCAGgTGGGAGGAGGGCGAGTGGAGGGGCTGGTGGAGGCCCTGGGAGCTCTCGGGCTGAATGAGGGAGTGAGGCTGCTGAAACAGACGGAGGGAAGGGCAAAGGACAAAGCACAGATCCCAGAGGTGAAGAATGACAGCGGCTTCCAGTCAGGCAGCCAATCAAtagaggagcaggaggagaagaTGGAGGAGGAGCCGGTTCTGGCCAACTCCTGATACACTCTTCACAGCAGCAACAGTGGTGTTGGTCTCCTCacctccctccctgcccccaAACTACACCCCCCCAACAAACCACCCTACAGGATCAGTCCACAAGCCTGCCGGCATCAGGATGGACACAGGACTCGGCCCTCCCTGGGATGATGCGGTTTGTGGCATCCACTCCGTGCAGCAGCAGGAGAGTCTCTTCTGCAGGAGACAGCAGTTTGTAAATAGCTTTCACCACTGCTTTCATCTGCTGATCCAGGGACACGTGCTGGACACCAGCAGGCAGTTTATTTAATGCAGAATGACAGTCTTTTGAGTGTGTGAAAccatccttttttttccctctctctttctcagtctTAAGGATGGAGTGTGAAAAAGCATGCAGAAAACAATAACCAATCCAACACTGCCCTTGTCAATGTGTACATGTTAATTGTGTCCGAATAAAGCGttacttattttgttaaa

Function

GO: NA

KEGG:

id description
K04469 NFKB2; nuclear factor of kappa light polypeptide gene enhancer in B-cells 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003176 True 3220 mRNA 0.57 23 13915105 13937723

Neighbor

gene id symbol gene type direction distance location
AMCG00003175 NA coding upstream 19283 13889930 ~ 13895822 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding upstream 80064 13823890 ~ 13835041 (+)
AMCG00003171 bmpr1a coding upstream 121396 13780156 ~ 13793709 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 193546 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 265345 13633428 ~ 13649760 (+)
AMCG00003178 NA coding downstream 82622 14020345 ~ 14028256 (+)
AMCG00003179 NA coding downstream 100789 14038512 ~ 14048879 (+)
AMCG00003186 zgc:154058,LOC106579282 coding downstream 131996 14069719 ~ 14080330 (+)
AMCG00003185 NA coding downstream 154185 14091908 ~ 14093014 (+)
AMCG00003184 NA coding downstream 176968 14114691 ~ 14119370 (+)
G141238 NA non-coding upstream 8019 13901775 ~ 13907086 (+)
G141226 NA non-coding upstream 65694 13847330 ~ 13849411 (+)
G141224 NA non-coding upstream 68951 13845950 ~ 13846154 (+)
G141222 NA non-coding upstream 70153 13844746 ~ 13844952 (+)
G141220 NA non-coding upstream 71590 13843179 ~ 13843515 (+)
G141245 NA non-coding downstream 12199 13949922 ~ 13950128 (+)
G141248 NA non-coding downstream 43114 13980837 ~ 13981099 (+)
G141249 NA non-coding downstream 43652 13981375 ~ 13985426 (+)
G141282 NA non-coding downstream 115746 14053469 ~ 14053682 (+)
G141401 NA non-coding downstream 506134 14443857 ~ 14445355 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 171562 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 804471 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 1032107 12878685 ~ 12882998 (+)
G140939 NA other upstream 1175338 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1236946 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 185060 14122783 ~ 14131275 (+)
G141331 NA other downstream 243057 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 346127 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 663594 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2526571 16464294 ~ 16500994 (+)

Expression


Co-expression Network