AMCG00003178


Basic Information

Item Value
gene id AMCG00003178
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14020345 ~ 14028256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003178
gggaaccactgtacTAGGCTACAGGAGGGCAGGGATGACAGTACTGAAAGTGTCCACGTCTCATTTTACAGTGCCTGCATCCCATGTGACGCCAGGTCTGCTTTTCCGTGTATGTCACACCCACACGGAGCTCTGCGTTTTTCCAGCCGTTTCGTGTGGACACATTGTAGCAGATCCCTTATGAATCCGGTTTCAATGGCCTGGCCGAAGTGGCCAATGAACAGACGCAGCTTCTTCTTCCACAGCTTCGCCTGGAAACGGAGAAACCCTATCCGCCACTAAAGCCCCCAGCACAGAAAGGGACGAAGCTTAAATCAATCGggaCCTCCGATGGGGATGGGCGGCTGAGCCGAGAGCAGGATCCTGTTAGTCCGCATTCCTGGTCTGAGCTCTTGCTGCGGGTTGCTCAAACCGGGAGTTTCATAAATGATGCTAATCTGTTGTGCAGAGACTTGCCATAGCTGGAACCGGAGCCAAGGAGACCTAGACCTGGGGTGTGAGGACCTGCAGCAGCTTCAGCAGCACAGGACACCAATCCAGAGATGAGTGGCGTGGCTGTggctctcctccctctctgcccactgctgtgtctgtgtgcgaaGCTATTGGTTGTGCCACCGTTGGTGTTTGACAGCCATCTGCGTGTGCTGGGGCATGTGGCGGGGCAGCTGGAGGGCAGAGGGCACGAGGTGGTGTTTGCCCTGCATGAGGGCCGGGAGTGGCCGGGAGGTGGTGGAGGCGGCGGTGGCAGCATTGAGGCCTTCACCTTCAGGGAGCAGCGTTACAAGGGAGTCTTCTCTGGCCAGGGGAAGGTCCACTTCCTGCAGGAGAAAGTCCAAGATGTCCTGAGTGGTGGTCCAAGCTCCCTGCTGCTATTCGGCATCCTGAAGAGATCGGAAGAAAACTGCGAGCTGATGGTGGGTGCCGCTGACTTCCTGTCTCGCCTGAGGGCGGAAGGCTTCGATCTGGTCTTGGTGGACCCCAGCGAGCTGTGCGGCTACGTCCTGGCCCGCTTAATTGGCGTCCCCTATTTCCTGCTGTCCCCCAGCCACTGGTACCCAGCTGAGATCGGAGCCCCCTCGCCCCTCAGCTATGTTCCAGAATTCAATTCCCGGACCACCGACCGCTCGGGCTTCGGTCAGCGGCTGTGGAACGTGCTGGTGTGGGTCACTGGCCGAGCAGCTGCGCAGTGGCACGTCCTCCCTGCCTTCGAGGCCGTGCTGCGCAGGCACCGAGGGGAAAGGGAGGCCAGGGACAACCCAAGCATGATGGATCTGGTCACCCATACCAGCTTCTTCCTGCTCAGCCTGGACCTGGCGCTGGACTTCCCCCGGCCCTCGCTGCCCAATGTGGAATTCGTAGGGGGCATCCTTACCAGGCCAGCTGCAGCACTGCCACagGAGCTGCGTTCCTGGGTAGAGGGTTCACAGAGGGGCGTGGTCCTGGTCTCTCTGGGAGTGGCCGGTCAGGTACTGCCGGGGGACCTGGCGGAGAAGATGGCTGCCACTTTTGCTCGTCTGCCAGAACAGGTCATGTGGAGCTACAGGAAAAAGGCAGGCCATCTCTCCAGGATCTTAAGGGACCATCCCGAGCACCCTCTGAACAGGACTGTGTACTGGATCGAGTACCTTCTGAGACATGAGGGGGCCCTGCATTTGCGCCCTGCTTCCTACGACTTGTACGCTTACCAGTACTACCTCCTGGATGTGCTGGCTTTCTGCACCGTGGTGACGGTGGCTGTTTTCTATTTGCTCTGCAGAGTTTGTGGCAGGTTTAGAAAAAACGGGCAGATCATAGAAGCGAAGGGGAGCCTGCAAGCCCACACAACACTGCTGAATGGACACCctgagagaggaaagaaagggGACTAGAATGCATGTGCCCGACTACAGATGTGCTCCTGATATGATTTTACAGTTCTTCTGCAATATTGTAATGACACCTGGGTCCTTAGGGGCTGGACAAGAATGTGATTAGTGATGCAGAAGTAGCAGATATCTTAGACTAAATCATGTCCTCTGCATTCTGTAACTTAAGCACGTTGCAaaggtttttttcttattaatattattgcacaTTGGATGGGATTTCCCATCTGCGGAGAATGTTAGATAAGGCCATTGCTGCATTTCAATACGCTTCCATCAGGAGGTTTTACAgcagaaattaaatgtgttgtgcGTTCACTGATCAGTAAGTTTctagaaggagagagaaatgaaCTGCTTACTACTAGCAGAGTGAGAAGCTTCTCAAAATGAGAGGGGACGatgttctttttccttttcattttgccCTGTCAAGTTGTGAGTGTCGGATGGGGACTCGCAAAGCTACGAGGTGGTAACGGTGATGCGTATTCGGGCAACGACATCATCTCCACGTTTAGATTGCTGTGCTCCAGTCACCAAGTTTAAAACTACTTTGATTTGGGGTCTTAATTCCACATGCATTTCATATGATGGACATTGTTTATGGATGtgaattgaattaatatattggTTCCTTTGTGtcattgtaaacaaataaaacttgataaaaaatgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003178 True 2546 mRNA 0.54 5 14020345 14028256

Neighbor

gene id symbol gene type direction distance location
AMCG00003176 NA coding upstream 82622 13915105 ~ 13937723 (+)
AMCG00003175 NA coding upstream 124523 13889930 ~ 13895822 (+)
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding upstream 185304 13823890 ~ 13835041 (+)
AMCG00003171 bmpr1a coding upstream 226636 13780156 ~ 13793709 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 298786 13704830 ~ 13721559 (+)
AMCG00003179 NA coding downstream 10256 14038512 ~ 14048879 (+)
AMCG00003186 zgc:154058,LOC106579282 coding downstream 41463 14069719 ~ 14080330 (+)
AMCG00003185 NA coding downstream 63652 14091908 ~ 14093014 (+)
AMCG00003184 NA coding downstream 86435 14114691 ~ 14119370 (+)
AMCG00003183 NA coding downstream 128245 14156501 ~ 14177456 (+)
G141249 NA non-coding upstream 34919 13981375 ~ 13985426 (+)
G141248 NA non-coding upstream 39246 13980837 ~ 13981099 (+)
G141245 NA non-coding upstream 70217 13949922 ~ 13950128 (+)
G141238 NA non-coding upstream 113259 13901775 ~ 13907086 (+)
G141226 NA non-coding upstream 170934 13847330 ~ 13849411 (+)
G141282 NA non-coding downstream 25213 14053469 ~ 14053682 (+)
G141401 NA non-coding downstream 415601 14443857 ~ 14445355 (+)
G141405 NA non-coding downstream 433911 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding downstream 472715 14500971 ~ 14508839 (+)
G141573 NA non-coding downstream 1157815 15186071 ~ 15186325 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 276802 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 909711 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 1137347 12878685 ~ 12882998 (+)
G140939 NA other upstream 1280578 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1342186 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 94527 14122783 ~ 14131275 (+)
G141331 NA other downstream 152524 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 255594 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 573061 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2436038 16464294 ~ 16500994 (+)

Expression


Co-expression Network