AMCG00003180


Basic Information

Item Value
gene id AMCG00003180
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13964881 ~ 13994367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003180
ATGTCGCAAGGCGGCAAAATCCTGCACCTGTATGTGGAGGTGAGATCATTGCCagaggaggaaggagggggGCCCGGGTTGCTCGAAGGGATAGACGCAACCAGGTTAACGGGGCCTAATCCAGTGCCCAGCTCCAGTGCGGTGTCGGAGGCTGGCCACAAAGGGAACAGCGGGAGCCAAAGCAGCAGTCCTTCCAAAAGTCCTTCCAGGCACTCTGTTGGTTTCCAGTCGCATGGCCAGCATGGGGGCCTTGGGGAGCATGCTTCACTGCAGCAGCAGAGACAGAGTTTGCCCTGTGATGGGCTTGGGCAGCTCCTGGCCGGGCTGCACCCTGGGATCAACGGGCCCAGCATACTGATGCGTACCCGCTCAGACTGTCAGCCCTTACAGACGGGCAGCCCGTCCCCCGTGCCCTCTGGCAGAACCACGGCTCCCTCCACACCTAGCAACGGGCGCAGGGCCTGCGAGGGGCCCGCGGGGGACGATGGCTGGCACTCTGTGGTCACCTTCAGCTACATTGAGAAGGCAAGTATCAAGACTGTGGAAAGCCCCTTGAAGACAAGTGGCCCGAATAATCCCTTTAAGCAAATGcaagaggaggagcaggagactCCTTCCCAGCTGTGCCGGAGGCCAAGTGACCCTGTCTGGGTTGAACAGGGGAAATCTTCTGCCAAGTCGAGCCCAAAACTGTGTAATCCAGGGTTAGGGGACAATGTTAATGCCCAGCAAGTGGCCTCCCCTAGACTCCTCCGCAAAACCCTGGCTTCCATTGCTAAAGCTGCCACTAACAGAGCCCTGGAAGAGTTTGGCTCTCCCCAGCTGCGGCGCCGAGCTGCCAACGGGTCTGACAGTCCCACTGGGCACAGCCAGCAACCACGCTGCCAGTCCTGGTCTGGAACACCTGTCCCAGTACGCAGCGCTGCTAGCCTTACCACTTCATCTCAGATGGACTCAGACAGGCCCCAGTCTCTCTTTGGCATGCCCAGGAGCCCAGCCAGCAACCAGCTCTCTTCTCAGGCTGCTCAGTCACCCTTGTCTATGTCCCCTAATCTGGAACGTACCACCAAAACCAGGTCACTGACTTATCAGAACACCAGGCAGTGGTCTGGGGGGGGGAGCCCGCGGCTAGCTTCCAAGCTCAATCAGGCCCTGGAATCGGGGGCAGGGAAGCCAGCCTCCATTCTCCATGACAAGTCGACAGCATGCAACAAGGAAAGCCCCAGCATTCAGAGAGGCAGCCAAGGACTCGGTGACAACCCTCGCACGAGTCACAGGGTCAATTTCAACCTGGGGGACTCTCCCAATAAAGGCCAGCTTGGGGGCAGCAAAAGCATCTCTCCAGAGTTGGCTCGCAAGTTAGCACAGGAGGCGACTAAACTGTCTAACATTTTCTTGGAAGCCCGAAACTCCCCGTCACCCACCCCTTCACCTGACCTCCCGAGATCGGAGAGCCCCAGACCGTGCTATCTATCTACACAGCCACTAAGCAAGGAGACCAGTCCTTCCAGCCACCGACAGCACTGTGAAGAAGCTGAAAGGACGGATGGACTGAGGAGCGGACATCCCTCTGGGAAGCAGTCACCTGTTCAGCATTGCAGAGATACGGGTTCGCCCGGCCCCGTTACGAGTGATCAAAGACACGGCACTAAGCAGCAGAGACAGGGATGGGACACAGGGTCACCCAGCACTGACACGAGAGTGCACAGGGGCGAACCGCCAGAGAGGGACAGGCCAAAATCTCCTAGACACCAGGTGGGACCGTGCCTGGAGAACAAAATCTCCTCCAGCCAGGAAAACAGACCACGGCTGACCGATTTCCTTGGCACTGCCAGCCCCAAAATCCAGAGAGATCAAACCGGTCGATACGCGGGGGACACCAGCCGACCCAGCATGGACATGAGACATGATCACACAGGAGCCAAAGACAGCCCAGAAGCCAGGAGAAGTGACCCAAACAGAGTGACTCCTTCAGAAGTATCGGGCTCTCCAATTTCAGTTTCCCGACCTCAAAGGGGGGAAGTATCTGGAAGGGATAGCCCAAACCTGGGATGCATGTATGTCAGCAAAGCCTCTCCAGTCATTCATCCCCATCAGACTGCTTCACCCGAGACTAGACCACAACCTCAGAGAGAGCTGACTGGGCTGGGCGGTGCATTGCTCGGGCCCGAGCCAGAGTCTCAGGCGAATGGCAAAAGGTCCTCTCTCAAGGATGAAGGAGACCAATCGCTGTCCTCTCTCAGTTCAGGACTGACACCGAAGAGTAACTCAGGGGGAGGCAGTGAGGATGCTGAAACTCAGCAGGGAGTGGATGAGAGTGAGGTCTTAGGGCTGTCTGGGAGTTTGCGTCCGGGGACCGTCAACGGCTCACAGCCCCAGAGCAGCAGTGAAGTAGACAGCATTGAACAAGACATCATGTCGCCAGAGTCGAGCCAAGGAAGCACCGGAACGGGGGATACCACTGTATCATCAAAGTCCGACAGTGCCTCCTGCTCGCCAGGGCCCTCCTTGCACTCCCAGAAGACTGCTCGTGCCAAGTGGGAGTTCCTGTTCGGGACGCCATCTGAAGACCCACCTGCCACAGAGCTTCAAGAGCCCTCCACCGCTCTCCCCAGTGGGGAATCTAGTGACATGCCCCTCACACCCACTCCCCCCCGAACTCTACCTTTGCAGTCTGTCACTCACTGTCCTGCCAAGATGAGCCAGGGGCAGGTGACGTGCCAGGGGCTGGCCAATCACAATGTGCAGCACGTGGAAGTGGAGCTTGTGACTCCACCCCCAGCGGTCGGAGGGGCCTCCCCTAAGACTGGCATCATCAGACGCACCATTAAATACTCGGAGACGGACCTGGACGCCGTGCCACTGCGCTGCTACCGAGAGACCAACATCGACGAGGTGCTGGCCGAGCAGGAGGAGGCCGACTCCGCATTTGGGAGCAACCGCAGCGTCCTGGGCACCTCGGGCACCGGCAGCAGCCCCCTGGGGGGCCCGTCGTTCGAGCGCACCGacggcgaggaggaggaggagctggaggaggagaatgACGAGATGGCTGACTGGGCCAGCGTGAGGATGCAGGGCGACAGGAAGCGTCAGAACGCCAGCTTGGAGCAGGACGAGGTCTTCAGTCTGCTGCTGGCACGCCCTACAGACTCTCTGTCCGACATCCACCCGGCTCTCAAGTCCCCCATTGTGGTCCCTGGCCCCCGGCGCCCCTCTGAGGACGGCCTGGACACCTTCAGCCGCCACTTCGAGAGCATCATGGAGTCCCACCGCGCCAAGGGCACGTCCTACAGCAGCCTGGACAGCGAGGAGCTCCTGACCTCCAGCCAGCCTGTGTTCACCTTCGACCTGCCCACCCTCACGCCTGAAATCCAGGGCCAGATCTGCCAAAGCGCCCGCCTCATCGAGCTCAGTTTTGCCCCATTGGCCCACAGCGAGCCGCCCAGCCTGTCGGACACCGCCCACACCACCGCCGACTCGGTGGCGAGCAGCTCGGATGCCACACGGGCCCCCTCGGGAGAGGGGCTGAAGAGCAGCGCAGAGGACTCTGTCTCCGGGACCACTTCCAGTGAGAAGCCCTGCGCCCGCCTGGCGACAGATTCGGACCTTGACCTCGACCTGAGCGGGCCCCTGGGACTGGGCAGCACTGACACGCTCACCAACGGCAACAAGGCTGACCTGGAGGCTGCCAAGCGCCTGGCAAAGAGACTATACAACTTGGATGGCTTTAGGAAGTCTGATGTGGCCAGACACCTGAGCAAGAACAATGACTTTAGCCGCATGGTGGCGGAGGAATATCTGAGGTTCTTCAACTTCACTGGAATGAGTGTGGACCAGGCGCTGAGATCTCCATCTGAACCCGAGCGGGGCTCTGGAGTGGGCCTGGTGTCGGTGCAAGGCAGCCACTCGGGAGATTTGCATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003180 True 3927 mRNA 0.60 7 13964881 13994367

Neighbor

gene id symbol gene type direction distance location
AMCG00003177 LOC106589263,LOC106579284 coding downstream 12950 13942314 ~ 13951931 (-)
AMCG00003174 gdh01,gdh3.2,glud1 coding downstream 93541 13848510 ~ 13871340 (-)
AMCG00003173 NA coding downstream 153745 13797075 ~ 13811136 (-)
AMCG00003165 NA coding downstream 559684 13396383 ~ 13405197 (-)
AMCG00003161 LOC108273829,LOC107561852 coding downstream 623116 13288224 ~ 13341765 (-)
AMCG00003181 NA coding upstream 60534 14054901 ~ 14061129 (-)
AMCG00003187 LOC106577245,LOC105010620,LOC103366016,LOC107678534,LOC104937335 coding upstream 102423 14096790 ~ 14108291 (-)
AMCG00003188 NA coding upstream 138653 14133020 ~ 14143426 (-)
AMCG00003189 NA coding upstream 186324 14180691 ~ 14188227 (-)
AMCG00003190 LOC105908129 coding upstream 266500 14260867 ~ 14270168 (-)
G141260 NA non-coding downstream 27172 13935284 ~ 13937709 (-)
G141225 NA non-coding downstream 118722 13845950 ~ 13846159 (-)
G141221 NA non-coding downstream 121410 13843179 ~ 13843471 (-)
G141201 NA non-coding downstream 128587 13765956 ~ 13836294 (-)
G141304 NA non-coding upstream 68805 14063172 ~ 14063526 (-)
G141305 NA non-coding upstream 69433 14063800 ~ 14064171 (-)
G141319 NA non-coding upstream 130517 14124884 ~ 14131066 (-)
G141372 NA non-coding upstream 379600 14373967 ~ 14374169 (-)
G141374 NA non-coding upstream 383282 14377649 ~ 14378313 (-)
AMCG00003164 sec24c other downstream 534557 13407272 ~ 13430324 (-)
G141004 NA other downstream 1085460 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1109540 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1225074 12728238 ~ 12739807 (-)
G140757 NA other downstream 2231119 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 675048 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 1062276 15056643 ~ 15140819 (-)
G141826 NA other upstream 2753694 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5549270 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5807712 19802079 ~ 19876762 (-)

Expression


Co-expression Network