AMCG00003182


Basic Information

Item Value
gene id AMCG00003182
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14122783 ~ 14131275 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003182
CACATCTGGGTCAGACTCCAGCCAGACAcagacagcacagtgcagtgctaACAGCAGCTGACTTCAACGCTGCTTTGACATGTTCCTGTAGGTGCCTTTTGCTCAAGCAGAAAGAGACGTGCAGTTTTCTCTGCAAGTTTGGGACACATCAGGTGGCAAgGATGCTCTTTTTCCTGGAGGGGGAGCTCTTGACTATGGGGATGTGGTCCTTAGGTCTAGGGGCAGTGGGGGCAGCCATAGCTGGGATTCTGCTGGCCAACACTGACATGCTGCTCACCACACCCGCCCAGGCCAACCTGGAATACTTGGAGGACACTGACCTCAAAACTCTGGGGGAAGACGAGAGCACGTTCAAAGCCAAGACCCTGTGGGAGCGCACGGGGGCTGTGGTTATGGCGGAGGCTGCAGAGCTGTCCTCTCTGAAACCCCAGCTGGAGCAGCTTGGGGTCCCACTCTACGCCGTGGTCAAGGAGAATATCGGCACAGAGATCAGGGACTTCAGGCCGCACTTCGCCGGGGACATCTTCCTGGATGACAAGAAACGCTTCTATGGTCCACACCGCCGTAGAATGGGCGCCTTGGGACTCATTCGGCTGGGCGTGTGGCAGAACTTCATCAGAGCCTGGAGGAAGGGCTTCCAGGGCAATGTGGCTGGGGAGGGCTTCGTCCTAGGGGGGGTCTTTGTTATCGGAGCTGGGAATCAGGGAATTCTGCTAGAGCACCGCGAGAAAGAGTTTGGGGACAAAGTCAACATCACGTCTGTTCTTGAAGCTGCCAGGAAAGTGGAAATACAGAAGTAGATATAATGCATAGACAACCCATTACTCTCCCATAAAACCTCACAGAACCCAGAACATTATTATTGAAGGAAGATAATTGATAATTGTACTGAGAACTACAAGTGACTTGACACACAATATTAACTCTATGCCCCCATAGAGAAAGAAGGAAGTACAGATTCTGCAAAGGCCAGGTTGTCTTGACAGTGTAACCAGGGGCCGGTTgcagaaaactaaaatagaaaTTTTAGACTTAATTTGACAGAccattgtgttaaaatgtaaactgactAAGATGTAgcctaaaaaatatatatatatatacacccacTGCCCCCCGAcctaaatgaaatacaattctgCATTGTATTCCAATAATTAGCACAGTAATTTTCAGTTACTGTGAACTGGGATCATCGCTATTTTAGAGAGGCCTGTTTTCTTAAagttcccagaatgcattgtgtgATAGACTTAggaagaccagtctaaggaaagaatGTTTTTTATGCAATTGTTTTAACTGAATGTTTGTCGATAGTATGACTTATAATTAGACTAAgacttagtctatgtttatgcaaccggcccaCATCCAGATCACAGCATCTATCTTTCTGAACAGATACTTTCTCATTACATCCTCATCATTTAGAATATGTAGTGCCTTCACATTTTTGGATTCTCAAAGGTCTTATGAGCACCTAAGAACAAGAGCAAAACACAATTCCTAGATACTGACACCTCAATGGAGGAAAAAGAGAAGTGAATACTGTGAATTTGAACATTGGTTCATACAAGTCAATGAAACTTACACTTAGATGTAACTTATGAATGTGTAGTAGTGCTGCTTTTAAAGGAACAAGGCTGTGTAGCTAAGGTGTGGCAATTGCACAAATGTTGTGGTACTTTCAAATTACCACAGAAACCCCTTTGATAAAAACCAATCCTAACTTGACAACCAGTTTGGAAGGCTGTCAAAGCTGTTCTGAATTCGATCTGTGCAAAGACggggcttttctttttctgctggAGGTTTGAGGCGCCGTTACATAAACCCCAAGGCATCCCAGTCTGCTTAAATGTAATATCTGCAATTATTGCTCTGCTTCAAGCTCAAGTCTACCCATACCCTTAGTAATCTAGTCTGATCTAGTTAGCTGGAAAggattttttgtctttctttatgAATTGAAGAGCTGGATTATATTGTTCCGTGGTGTTGTGCAAGTGGGGGTGCTGTATGATCCCTACCGGTGTGAACTGGACTGGTTCCTCAAGTTCCTACTGCCACTGCGCCAGTACTGTGATCTGGAAGTGCATTAATGACGGCCTGTGTCTGAAATCCACTGAGGGATCAGGCCCGATGCTTACAGTCCCAGAGCACCAGGTCAGTGCAGAGCAGACAGACGGGTGGAACCAGGAATGTGGACAccatgtgaaataaaacaaactgaatgaatCCTTTCCTTGTGCAGGCTTTTCTTTACTGGGAACACTGGGAGGATATAGAGCAGATGCAAAGGTTATAATACTGGTAGGTGAAATACATGTCCTTCATTAGCTGGCTTCATATCACGTATGGACTGGTCAGGTTTCAG
>TU177734
TAAGTAACCATGCAGTGTCAGATCATTGATTCCAGAATGAGTTGTCAATCCTAACACCTCCGCAGCGGACATCAGTGTgGATGCTCTTTTTCCTGGAGGGGGAGCTCTTGACTATGGGGATGTGGTCCTTAGGTCTAGGGGCAGTGGGGGCAGCCATAGCTGGGATTCTGCTGGCCAACACTGACATGCTGCTCACCACACCCGCCCAGGCCAACCTGGAATACTTGGAGGACACTGACCTCAAAACTCTGGGGGAAGACGAGAGCACGTTCAAAGCCAAGACCCTGTGGGAGCGCACGGGGGCTGTGGTTATGGCGGTGCGCAGGCCAGGATGATTTTTGTGCAGAGAGGAGGCTGCAGAGCTGTCCTCTCTGAAACCCCAGCTGGAGCAGCTTGGGGTCCCACTCTACGCCGTGGTCAAGGAGAATATCGGCACAGAGATCAGGGACTTCAGGCCGCACTTCGCCGGGGACATCTTCCTGGATGACAAGAAACGCTTCTATGGTCCACACCGCCGTAGAATGGGCGCCTTGGGACTCATTCGGCTGGGCGTGTGGCAGAACTTCATCAGAGCCTGGAGGAAGGGCTTCCAGGGCAATGTGGCTGGGGAGGGCTTCGTCCTAGGGGGGGTCTTTGTTATCGGAGCTGGGAATCAGGGAATTCTGCTAGAGCACCGCGAGAAAGAGTTTGGGGACAAAGTCAACATCACGTCTGTTCTTGAAGCTGCCAGGAAAGTGGAAATACAGAAGTAGATATAATGCATAGACAACCCATTACTCTCCCATAAAACCTCACAGAACCCAGAACATTATTATTGAAGGAAGATAATTGATAATTGTACTGAGAACTACAAGTGACTTGACACACAATATTAACTCTATGCCCCCATAGAGAAAGAAGGAAGTACAGATTCTGCAAAGGCCAGGTTGTCTTGACAGTGTAACCAGGGGCCGGTTgcagaaaactaaaatagaaaTTTTAGACTTAATTTGACAGAccattgtgttaaaatgtaaactgactAAGATGTAgcctaaaaaatatatatatatatacacccacTGCCCCCCGAcctaaatgaaatacaattctgCATTGTATTCCAATAATTAGCACAGTAATTTTCAGTTACTGTGAACTGGGATCATCGCTATTTTAGAGAGGCCTGTTTTCTTAAagttcccagaatgcattgtgtgATAGACTTAggaagaccagtctaaggaaagaatGTTTTTTATGCAATTGTTTTAACTGAATGTTTGTCGATAGTATGACTTATAATTAGACTAAgacttagtctatgtttatgcaaccggcccaCATCCAGATCACAGCATCTATCTTTCTGAACAGATACTTTCTCATTACATCCTCATCATTTAGAATATGTAGTGCCTTCACATTTTTGGATTCTCAAAGGTCTTATGAGCACCTAAGAACAAGAGCAAAACACAATTCCTAGATACTGACACCTCAATGGAGGAAAAAGAGAAGTGAATACTGTGAATTTGAACATTGGTTCATACAAGTCAATGAAACTTACACTTAGATGTAACTTATGAATGTGTAGTAGTGCTGCTTTTAAAGGAACAAGGCTGTGTAGCTAAGGTGTGGCAATTGCACAAATGTTGTGGTACTTTCAAATTACCACAGAAACCCCTTTGATAAAAACCAATCCTAACTTGACAACCAGTTTGGAAGGCTGTCAAAGCTGTTCTGAATTCGATCTGTGCAAAGACggggcttttctttttctgctggAGGTTTGAGGCGCCGTTACATAAACCCCAAGGCATCCCAGTCTGCTTAAATGTAATATCTGCAATTATTGCTCTGCTTCAAGCTCAAGTCTACCCATACCCTTAGTAATCTAGTCTGATCTAGTTAGCTGGAAAggattttttgtctttctttatgAATTGAAGAGCTGGATTATATTGTTCCGTGGTGTTGTGCAAGTGGGGGTGCTGTATGATCCCTACCGGTGTGAACTGGACTGGTTCCTCAAGTTCCTACTGCCACTGCGCCAGTACTGTGATCTGGAAGTGCATTAATGACGGCCTGTGTCTGAAATCCACTGAGGGATCAGGCCCGATGCTTACAGTCCCAGAGCACCAGGTCAGTGCAGAGCAGACAGACGGGTGGAACCAGGAATGTGGACAccatgtgaaataaaacaaactgaatgaatCCTTTCCTTGTGCAGGCTTTTCTTTACTGGGAACACTGGGAGGATATAGAGCAGATGCAAAGGTTATAATACTGGTAGGTGAAATACATGTCCTTCATTAGCTGGCTTCATATCACGTATGGACTGGTCAGGTTTCAGCAGGGGCTCTCCTGTGTGGACTCAttttcaacacagaaaataccTACCTGACACAACACTGAGCAGACGCCATCAAATCCCATCAAATGCTTATGAAGGCATTGATAAACTAAAAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016209 antioxidant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003182 False 2380 mRNA 0.45 6 14124905 14131159
TU177734 True 2448 lncRNA 0.45 6 14122783 14131275

Neighbor

gene id symbol gene type direction distance location
AMCG00003184 NA coding upstream 3413 14114691 ~ 14119370 (+)
AMCG00003185 NA coding upstream 29769 14091908 ~ 14093014 (+)
AMCG00003186 zgc:154058,LOC106579282 coding upstream 42453 14069719 ~ 14080330 (+)
AMCG00003179 NA coding upstream 73904 14038512 ~ 14048879 (+)
AMCG00003178 NA coding upstream 94527 14020345 ~ 14028256 (+)
AMCG00003183 NA coding downstream 25226 14156501 ~ 14177456 (+)
AMCG00003191 NA coding downstream 139124 14270399 ~ 14273054 (+)
AMCG00003199 NA coding downstream 261314 14392589 ~ 14396904 (+)
AMCG00003197 sufu,LOC107666454 coding downstream 281476 14412751 ~ 14437585 (+)
AMCG00003202 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107690907,LOC107722222 coding downstream 314658 14445933 ~ 14455523 (+)
G141282 NA non-coding upstream 69101 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 137357 13981375 ~ 13985426 (+)
G141248 NA non-coding upstream 141684 13980837 ~ 13981099 (+)
G141245 NA non-coding upstream 172655 13949922 ~ 13950128 (+)
G141238 NA non-coding upstream 215697 13901775 ~ 13907086 (+)
G141401 NA non-coding downstream 312582 14443857 ~ 14445355 (+)
G141405 NA non-coding downstream 330892 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding downstream 369696 14500971 ~ 14508839 (+)
G141573 NA non-coding downstream 1054796 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 1058708 15189983 ~ 15190345 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 379240 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1012149 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 1239785 12878685 ~ 12882998 (+)
G140939 NA other upstream 1383016 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1444624 12371999 ~ 12678159 (+)
G141331 NA other downstream 49505 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 152575 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 470042 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2333019 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 2395914 16527189 ~ 16559206 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G250398 NA non-coding NC_048567.1 CM023221.2 35261210 ~ 35261419 (+)
eurasian perch (Perca fluviatilis) G210765 fam213a,LOC104950654,LOC100692098,LOC101484707 non-coding NC_053132.1 CM020929.1 8064709 ~ 8067375 (+)