AMCG00003192


Basic Information

Item Value
gene id AMCG00003192
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14341770 ~ 14367223 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003192
AATTGATAAGGCGGGAGAGATTGAGATATCCGCGCTTTTTTGGAAGAACGGGACTTACAGCGGGATGTGCCCCTGCCTTTGGTTGATGTCTTTTCACGATGAAAGATAGGCCGCCGTGTGCACAAGCCGGAGGgAATCGTGACATTACAGACTTCTACAAACCTAGGAGCAGTTCAGCCAGAACACCCCCTCTCACACAGATGAAACAACACGAGCCAGAGGCCTGCCTCTCCATCCGGGACAGCGCCAGCACCACCAAATCAAACAGTGACCTCAAAAAATACCTCTCCACCGCGGTGAAAGCTGTAATCCCTCTGGGTTCTGCGCGGCGCACGAGCAGTGATGGCAAGGGTGGCCCCCTGGCAAAAACTGCCCCCTTCAAACCCCCGCCGAAACCCCGGCCCTGTGCCACTCTCCTCCCACAGAGTCCGCCTGCCAGGGGCCTGGGTCTGGAGCCGGGAAAACAAGCTCCATCTCCTGGTAAAACCGCTGTCCGGGGAGACACCCAAGGGAATCATGGGTCCAGAGAGAGCCATTCCAAAGCGCACCAGCCCAGTGTGGTCTTCAAAAAGTTCCCCACGCCCCAACTCAAGGTGGGCAAGGATGACAAGCTCATGGCTTACTCCGCAAAGGCCCAGCCAGCTGCCTACAGGGGCTCAGCCATTAGTCAGCTAAAGGACACTCACTGTGGTCAGAATGGAGAGCAGGGGAGAAAGTGTCAGATGGCCGCTGCTGGCTCCTGCAGGGATCGTGCTTCTGATCCCAGGCGGCACTCCGTGCCCCTCATCAGGGGTCCCCTGCACAGCCCCTGCAGCCCCCAGGGCTCCATCAACTCCATGTATCAGAAAAACCTGCAGCCGTaccacagagagagggaggagaagaggaggatcCTGGAGAAACCGAAGCAGCCTGTGTGCAGCCCTGTCTCCCCGTCCCACCGGGAAAATGGATCGCTTGAACACAAGAAATTCCGTGCCGTTACTAGCAATGCTCCAGttAGTAAACTTCAGTCTATGAAGACTTCTATGACCCAGCCGTTAATAACCATGCCATCTGGAAGATTAAAGAGGAGTCTGTCCTACTCTTCCTCCACTGACCGTTGCACCCTGCTCTCTATGGATATCCCTCcagtgaagaggaagagagaccTGGCCACGGAAgacaggagggaggggaagagacATTGCGTGCCTGAGTCGGGCCGGGGAGCCAGCAGTGGCATTAAGGCTACGAACACAGGGTCCGATTATATTCAGCAGGCTTTCTTGAAGGCCACAGACAATGGGGTTTTGAAGCTGAAGGAGAAGTCCTTCCCCAAAGTGGCAGAGTCCCCAGCCTTTGGGACAAAGCACACAGAGCTGGGGAACAAGAGCCCCCCGGCCTTCTCCCAGCCCCCCGTGCGATGGCTCTTCCCCCAGGTCAGTCATGAGCACAACAGGGAGATGAAGGAGAACCACAAGACTCCCTCCGatactttgaaaagaaaagccaaGACTATCGATCACAAAGACTTAAAATACGTTTTCCTCCAGCGTATGGCCAAAGTGAGCAAAGGTGGATCGGTCAGAGATGAGAGCCCCAGGGTGCCGTCTGATTCCGACATGGAGGGCTGCTCTTCCTCACAGGATATCACTGGACCGTGGGCTTCCCAGAACTCTGCCTCCAGCCCAGAGAGCAAAGTGAGGGCCCCAGGGGACACTTTGCACAGCGACACAGCACTTTCTCCCGTACCCAGCACTGTGGAAAACGCTGTGAAGAGCCCTCCTGCTGCAGCCCTGAACTGTAAAAGGTCATCTCCATCCCTCAAGAATGTTGGAGACTCGGTCTCCCCTCATAGGGTCCCAGATCCCAGCCCCAAATCAGGTCCCCTCTCCAGCACAGACAGCCCGGAGAAGGCGTCTGAGGACGGGGCATCTCTGGACAAGTCGTGGCATAGTCCAAGCGGGGGGAACTGTGCGTCCAGCAGCGATAGTGAGAGCGAGGATGAGCAGCTACTGTCACTGCAGGAGATTTTGGCCCTCAGCGCCAAGCCCCCGGCCACTCCAGAGAAGGGGGCCTACTCGGCGCCGGGCACGCCTGTTTCTTCTGCTGCGCTTTACATGATCAACAACAGACCCCTAAGTTATAAAAACAGCCTGGAACGAATGCTgaaggaaaaggaagaaaaccAGAGGGTAAAGGAGATTGAAATGAAGTTGATATTGTCCTGCAAGGAGGACATCTCGAAGCTggcagaggaggcagagatgAGTACAGACGAAGAGGAGACCATATCTCAGGAGCATCGGGACTTTGTGCAGAAATTTTCCATAGTTCCTGACGCGATTCCTGACCTGCACCCAGGAGAGGAGGTCTTCGCACTGGCCAACTTTGGGAAGCTCTTCAACCAGCACAGTCTGGACCTGAGGAACTGTGGAGTGGTCCCACAGAATGGCAGCCAGAAAGTACTCTTCCAAACGCACCCTAGGCAGCAGCTCCTCCTGATTGGCCTCGGCCTGCTGACGAATGCCTACCGCGCCACGCCCTGCCAGCCGGCAGTGTCCCGATGGCTGTTCCAGGATGTGTCCATGGTCTTCCTCAACATGGGGGTGCCCTTTGTCAGTCTCTTCCCCCTGGAGGTCCTGCAGCCCGACTTCTCTGAGGTGGATGTAGTGAAAACGGTGGACGTCTTTACGGAGGAAGTCCAAAATGGCAGCACTCACAGTTCAGACGTTTTTCCGGAGCACAATTTTGTCAGTGTCATTAAGtaCCTGGTGCTGTGCAGCTCCCTGTGTCCCCAGGCGTACAGCGaccaggagctgctgctgctgctatgcATGATCTGCAGGGTCAGCCTGGAGAAGCAGCTGCGTCTGCTGCCGGTCAAGGACCTGCGCTGCCTCCTGCTCTGCCTGttacCTCAGATTTGTCTGATCTTGACTGACCTAACAGACCATCACCATAACCTGCGCAGGCTGGTCCGGCTTCTGCCAGACAACAGGCGTGGCAGGCAACTCAGGAAACATTTAAGCCTGTCGATCATCTCCAAATTATTAAACCACAGATGCACGTACAAGGCTACGAATACTGATCTGCAGCTATCAGACCTGCGTTTGTACCTGTTCCGAATGAAGCCCTCGTTGCTGTCCAAAGGCATTGCAGCAGCAAAGAAGGTGGCATCTGAGGGGCTACAGCATGAAGAGGAGAGCTCAGTCAGTGTGGACCAGCAGGCTTATTACCTCTGCTGCAGCCTGTTGGCCTTAACTAATGAAGTGACAAATTTTGAATCCATTCCTTCTGGACAAAAGGAACACCTGATGATCCTGTCCACTGAACTGGAAAAACACATCAAGTGCGATATCCGGGAGAGTGAAAAACGCTTGTATAGGAGCAAGGGGAAGCTGTACGACTACTGGGAGCCTCTGCCAGAAGACATGGTGGCAACCAGTTCAGAGCCGGGCAGCAACGCCACGTCCGTGTCTACAGAGTTCCAGCTACGGCTGGAGGATTCAGAGGGCAGCCCCTGAACGCGGTCGGGGCTCCCCTCCTGTTCCCATTCCTCCTTCAGGTTCTCAATTCCGTTGGATCAGTTTTGATCTTGATCTTTAAACCTTTCTTTAAACTTAATAGAGAGGTTTTCCCTTCTCTACTGTATAATAAGCCCTCACAGCACCCTTCTGTTTGCCTGGACAGATTTCTGCCAAGTCCCCGTCCTGtataaactaaatattattaatttacggAGAATCAAGGGTGTGCCACAGAACGAAAAACAGTGAATCCGAATCCTTATAAGGAACTTCACAAACTGAGCCAGTCTCACTCACCTAAAGCAAAAGACGCAGTGAGCCGGTCTGTTATGATGGTTTCAGGATTTGTTGCCATGTTTACCcagaaaatgaagaaattgAGTGATTTGGTTTTGCTCATACTATAGATagatgcataaatacattttgagttACCATTATGCatcactaaaataaatgtaatacgtTAATTAAAACCTTAAGAAGAATGCACTATTTAGTTGTGCAGAAATATTTCCTGTCAATCTCAGGCGATCAGAACTTTCTTTGGTTATCCTTCTAAACTGACCCACCACTCCCGATTTCATGGTCTCTATTCCAAACCTAATCTCCATGCTTGATGTTTCTTGGAGGGACTGTTTTTGTGCCGTTCTGTTACTTAGCCAGGCCTCCCCTGCAGTTTAGTGCTGTCAAAACAGAGGGACTGGTGATTACAAACACAACCTCATCTAATAACGCCCAAGAGCTGGCGAAATGATACTGTAATTACTAGGTAAACCACTTATTAACGGATACTggctttttaatgtgtttccaaaacagcaaaatgcattcaaattatATGAAGAAGAATAATCCTATGGCCTTTTGGTTTCTGGACCAGGtcattctttgttttccttcccaAGATCCCGTGCAAACTGTCAGGTGTTGTGGGGAAGTGAACCTGTGGACTGATCTCTGTAGGTGTGCCAGACCATTGCTGTCTATCTCGAGCGTTAGTTTGTTGTAGATTATCCTAATTTCCCCTCATATTGGGTGCGCTTACAGTAGAATAACTGTTAGAACCCTTAAACTATTAATTGGTTTGTTAGAAATTGCAATCTATTGCACTTTAAATCCTTAGattagttttaatgtatgtatttttgttttttaatgaaaatgccTTACTCTAGCTCTAGTGTGGGACTGGAGATGAAGCACACTTTAAGCCAAGCTGCtattcagttttatatatatttatatatgtatgtaaactgcatttaaaaaaaaaaaaaattataaatacatattagtaTTTGGCTTTACAAGTAATGTTAAACTTTTTGTAAGATCAATAGTTAGCTTTATCTAggttttgtttgagtttttatttgtaatgttgattaaagcttttttttttttgttacatgcaAACGGTATTGTACTATTCACAGTAGGGTTTAGACACGTTTccaacatttttaattgcttcactTTTTACATAGGAGGACTATAAACTTGACATGTTATATGTGGATGTGCTgctatatgtataaaaatagaatttttattataataatttatgcCCAGTCAGGGATTTTTCATCCCCCACAAGTCCTCCAATAGCACTGAAACACAATAACATTCACTGAAAACAATCCACAGTTCATAAGttaaattgttcatttttaaatttatttcttCATGTTGGCAATACATCTAATTTGTACTTCCATCAGCACTGATTAGCTTTAATGTTAGTAGATTGTATATCATCTATTGATTCTCACCTGCCTCTTTAATTGTAACGTCCGCCAAAAGACTTGTTTTGGTCTTTTGAATATATTCATCAATGTGTTGGAATgtcttttttaagaaaaaaaaaaacacttctgttgtctgaaaatctgaaaaatctaaCTCGAATTCTGCAAAGtgtctttcaattaaaaagacatacattaagttatttgatgttctgtatatttatgcaatttatgtatttgtaggTTTTGTTaccatttctaaaataaaacctgGCTGCCAGTCTCTGGTTTGTTTCATatgca

Function

GO: NA

KEGG:

id description
ko04214 Apoptosis - fly

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003192 True 5566 mRNA 0.48 20 14341770 14367223

Neighbor

gene id symbol gene type direction distance location
AMCG00003194 NA coding downstream 36191 14290195 ~ 14305579 (-)
AMCG00003193 NA coding downstream 55425 14283405 ~ 14286345 (-)
AMCG00003190 LOC105908129 coding downstream 71602 14260867 ~ 14270168 (-)
AMCG00003189 NA coding downstream 153543 14180691 ~ 14188227 (-)
AMCG00003188 NA coding downstream 198344 14133020 ~ 14143426 (-)
AMCG00003196 NA coding upstream 17872 14385095 ~ 14385715 (-)
AMCG00003201 actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867 coding upstream 38238 14405461 ~ 14411926 (-)
AMCG00003200 arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841 coding upstream 105121 14472344 ~ 14479936 (-)
AMCG00003205 NA coding upstream 123561 14490784 ~ 14496042 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding upstream 132070 14499293 ~ 14512805 (-)
G141319 NA non-coding downstream 210704 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 277599 14063800 ~ 14064171 (-)
G141304 NA non-coding downstream 278244 14063172 ~ 14063526 (-)
G141261 NA non-coding downstream 369804 13971767 ~ 13971966 (-)
G141260 NA non-coding downstream 404061 13935284 ~ 13937709 (-)
G141372 NA non-coding upstream 6744 14373967 ~ 14374169 (-)
G141374 NA non-coding upstream 10426 14377649 ~ 14378313 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding upstream 76608 14443831 ~ 14446505 (-)
G141517 NA non-coding upstream 263189 14630412 ~ 14669084 (-)
G141520 NA non-coding upstream 292196 14659419 ~ 14659991 (-)
AMCG00003164 sec24c other downstream 911446 13407272 ~ 13430324 (-)
G141004 NA other downstream 1462349 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1486429 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1601963 12728238 ~ 12739807 (-)
G140757 NA other downstream 2608008 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 302192 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 689420 15056643 ~ 15140819 (-)
G141826 NA other upstream 2380838 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5176414 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5434856 19802079 ~ 19876762 (-)

Expression


Co-expression Network