AMCG00003195


Basic Information

Item Value
gene id AMCG00003195
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14283850 ~ 14299993 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003195
ATGGTCAGCACCAAACACAGCCCCCCCAGCACGCCAATCAAGGAGATGTACATCGCCTCCATGCTCTTGAAGGTCTGGTACTCCGGCCGGGAGGGCAGGGGCACGGGCGGCAATAGTGTGGAGGACTGGGTGGGTCTGGGATGGGacggcagggagatgagATCTGCCACAGAGGACAGGGACTCAGTGCCTACCCTCTCCCGTGCCGTTCTCACACCCTGTGTTCCCGTTCTGGATGTCCTGTGTCAGGCTGGAACTGCGGGGAGGGAAAGAACACTTCTAAGACAGgCAAGCAGGTATGCAGGCGCCCCACACCGTCCCGCCCagcgcccccccgcccccccctcaCCTGTTGTAGTGCATCGCGATCTCGGCACAGCGCTCCCCGTCCCAGCCGCAGTAGGGGTCCCGGGCAAAGATGCAGTCGAAACAGGACAGTTCCGGCTGAAGGTATTCCCCGTCCTGAGGGCTTCTGTCCCTGCTTGTCCCTCCCCACAGTGCATCACAGCCCAGTTCAGGGCCAGGGGTTTCAACTCCTCGTGGGACCTCCCCGACAACGTGCTTGACTTTGTCCGGAGACACCCGCTCATGGCCGAGCAGGTCCGGCCACAGCAGGAGCGCCCCCTGCTGTTGAAGAGGAACGTGGACTACACCAAGATTGCCGTCCACAGAGTGGTGGCCCTGGATGGACAGCAGTACGACGTGCTCTTCATCGGCACAGATGGAGGCTGGCTGCACAGGGCCGTGGCCGTCGGGCCCCGTGTCCACATCATCGAGGAGATGCAGCTGTTCAACCAGCCGCAGCCCATCGACAGCCTGGTCATCTCGGAGGCTCAGCCGACCGGACACCAGCCTCAACGCCGCTCCCCTCAGCCCTCACCACTGGGAGCCAAAGACCCCGTAGAAGATGCTGCTCCGCCAGCCCTGGCTCTCCAGCACAAACACGCTGCGCAGGATGTTGAAGTGGAAGTCATAGTCGGGGATGGAGCAGACGAGACGTGCTTTCAGGAAGGATGTCCACTTCTTCTGCAGGGTCCGCCGGCCGCCCCCGTCCCCCTGTGCCACAGAAACCAACAGGTCGTTAGAGACACACACGCCAGACACAAGCAGCAGCTGAATCTTAATTACTCGGGCAGCGCTCAGTGTGTGGGGATATTACCGTCCAGCCAGCGCTTCGGGGCCTCCTCGGTCTTCAGGGTATGGAAGGGGACATTGCGGCGAATGTCGGAAAGGCTGCGGAACTCGTACTGA
>TU177803
CACATAATAACCTGTCCCAGAGAGACTGTAACAgtgacaaaatacaaagcacCAAAGAGAGCCCGCACATCTAATCAACCTCTCCAAGTGAAATACAATAGCATATTTGAATTCTATTAAAGAATTAAAGACAcccgtgtgtgtttgtgccatCTGACTCAGTTCCGGCTGAAGGTATTCCCCGTCCTGAGGGCTTCTGTCCCTGCTTGTCCCTCCCCACAGTGCATCACAGCCCAGTTCAGGGCCAGGGGTTTCAACTCCTCGTGGGACCTCCCCGACAACGTGCTTGACTTTGTCCGGAGACACCCGCTCATGGCCGAGCAGGTCCGGCCACAGCAGGAGCGCCCCCTGCTGTTGAAGAGGAACGTGGACTACACCAAGATTGCCGTCCACAGAGTGGTGGCCCTGGATGGACAGCAGTACGACGTGCTCTTCATCGGCACAGATGGAGGCTGGCTGCACAGGGCCGTGGCCGTCGGGCCCCGTGTCCACATCATCGAGGAGATGCAGCTGTTCAACCAGCCGCAGCCCATCGACAGCCTGGTCATCTCGGAGGCTCAGGTTAGCAGGAGGCAACACCCTCCCAACCATTCACTCTCATTCTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003195 True 1251 mRNA 0.62 7 14283850 14299993
TU177803 False 608 TUCP 0.55 2 14287807 14288742

Neighbor

gene id symbol gene type direction distance location
AMCG00003191 NA coding upstream 10796 14270399 ~ 14273054 (+)
AMCG00003183 NA coding upstream 106394 14156501 ~ 14177456 (+)
AMCG00003184 NA coding upstream 164480 14114691 ~ 14119370 (+)
AMCG00003185 NA coding upstream 190836 14091908 ~ 14093014 (+)
AMCG00003186 zgc:154058,LOC106579282 coding upstream 203520 14069719 ~ 14080330 (+)
AMCG00003199 NA coding downstream 92596 14392589 ~ 14396904 (+)
AMCG00003197 sufu,LOC107666454 coding downstream 112758 14412751 ~ 14437585 (+)
AMCG00003202 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107690907,LOC107722222 coding downstream 145940 14445933 ~ 14455523 (+)
AMCG00003198 LOC107569416 coding downstream 156748 14456741 ~ 14459478 (+)
AMCG00003203 sfxn2,LOC107755483 coding downstream 182076 14482069 ~ 14491605 (+)
G141282 NA non-coding upstream 230168 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 298424 13981375 ~ 13985426 (+)
G141248 NA non-coding upstream 302751 13980837 ~ 13981099 (+)
G141245 NA non-coding upstream 333722 13949922 ~ 13950128 (+)
G141238 NA non-coding upstream 376764 13901775 ~ 13907086 (+)
G141401 NA non-coding downstream 143864 14443857 ~ 14445355 (+)
G141405 NA non-coding downstream 162174 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding downstream 200978 14500971 ~ 14508839 (+)
G141573 NA non-coding downstream 886078 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 889990 15189983 ~ 15190345 (+)
G141331 NA other upstream 99207 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 152575 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 540307 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1173216 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 1400852 12878685 ~ 12882998 (+)
AMCG00003207 NA other downstream 301324 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2164301 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 2227196 16527189 ~ 16559206 (+)
G141962 NA other downstream 3376286 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3421251 17721244 ~ 17725381 (+)

Expression


Co-expression Network