AMCG00003197 (sufu,LOC107666454)


Basic Information

Item Value
gene id AMCG00003197
gene name sufu,LOC107666454
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14412751 ~ 14437585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003197
CGCGTTTTCAGGAGAAGCAACAAGCTTCTCTTCGGGAGAAAACGGGAGGTTCATTTGTACTTGTAGTCAAACAacactgtataaaatataaacaatagtATTTCGGAAGTGGAGGGGCAGCGGAATTAGCTTTTACGCTTTCGACGTAAAAATACggaattacttttttcccctgtgATTTATTCTTCCATTCTAACTGGCGCTCGGTGAGAGAGATGGATGATCTGCGGCCTAGCGGCGGCGGCGCCGGAGCCGGAGCCCAGGGACTGGCGTCGCTGTTTCCCCCGGGTCTGCAAGCAATTTATGGGGAATGCAGACGGCTGTATCCCGAGCAGCCCAATCCGCTGCAGGTCACTGCTATCGTTAAATACTGGTTGGGAGGACCAGATCCACTAGATTACATTAGCATGTACAGGAATGTGGGCTGTCCGGCGCAGAACGTGCAGGAGCATTGGCACTACATTAGCTTTGGGCTCAGCGATCTCTATGGAGACACCAGAGTGCATGAATTTACAGGCCAAGATGGTCCCAGTGGGTTTGGATTTGAGCTGACATTCAGGCTGAAGAGGGAAGCTGGAGAGACCGCACCACCCACCTGGCCTgccgagctcatgcagggactTGCCAGATACGTCTTCCAGTCAGAAAACACATTCTGCAGTGGGGACCATGTTTCATGGCACAGTCCTTTAGACAACAGTGAATCTCGAATCCAAcacatgctgctaacagaagaCCCCCAGTTACAGCCTGTGCAGACCCCCTTCGGCCTTGTTACTTTTCTACAGATAGTCGGGGTTTGTACAGAAGAGCTGCAGGCTGCCCAGCAGTGGAATGGCCAAGGCATCCTGGACTTGTTACGCTGCGTCCATGTTGCGGGGGGCCCGTGGCTGATCACAGACATGAGAAGAGGCGAGACCATCTTTGACATCGACCCACACCTCCAACAGGAGAGAGTGGACAAGGGCATCGAGACAGACGGCTCCAACCTGAGTGGCGTCAGTGCCAAGTGCGCCTGGGATGACCTCAGCCGCCCCCCCGAAGACGAGGACGACAGCCGGAGCATCTGCATCGGCTCCCAGCCGCGCCGCCTGTCAGACAAAGACACCGAGCAGATCCGAGAGGCCCTCCGGAAGGGACTGGAGATCAACAGCAAGCCCGTGTTGCCTCCCATTAGCGGACAGAGACAAAACCATGACCGGCCCCAACAATCAGTGGGCCATTTGCAGAGCCAGCAGACGGCAAGGAGTCGCAAGGACAGCCTGGAGAGCGAGAGCTCGGCCGCCATCGTTCCCCACGAGTTGGTGCGCACCCGGCAACTGGAGAGCGTGCATCTGAAGTTTAACCAGGAGTCCGGGACGCTCATCCCACTGTGCCTGAGGGGTCGTCTGCTTCACGGAAGGCATTTCACATATAAAAGTATTACTGGCGACACTGCAATCACGTTTGTATCGACAGGTGTGGAGGGGGCCTTTGCCACGGAGGAGCACCCGTATGCTGCCCACGGGCCCTGGCTACAGaTATTGCTGACAGAAGAGTTTGTAGAAAGAATGCTTGATGACCTCGAAGATCTGACTGCTCTTCTGGAGACTAAACTGCCTAAGGAGTACAGCTGGCCAGAGAAGAAGCTGAAGATCTCCATCCTGCCCGACTCTGTGTTCGACAACCCTCTGCAGTAGCAGAGCGGGGCGCGCTGCAGACCCGCCCCCCCCCATCTCCACGCTGAGCCAGGCTCACGCGCATCTGACACGAGTACGAGCCAGCGGAGACCAAACCCTCACAAACCACCACCGACGCCACTTCAAGGGTTTGTGTCCCAGCTGTGGCTGGGGAGGGGCTAGGTCCTATTGAGGTGCCCATTTCTCCCCACTCCCATCTGCTACCGTCCCCCTTCCTGCTCCACAGTCCTCTTGGTCTTCAGACGATGGTTCCACTGTCCCAGAGATCCAGAACTCGGTCTGGTAGTCTTGTTGGTCTTGCCCAATGCAGGTTCTGTGTTCTCGTGTAGCTGCAGAAGGTTCTCAATGTGTGTATGCTGGCCAGGCTGTTTGTAGAGTGACTTTTTTGATGTACTATGGAGATCATTTAAAACCCATGAAAGCCTTGACCTTGGTATACAACCCTGGGTAGCAGAGGGTGCTGCAGAGCTGAATATTGGAAGGGACCAGACCAGGGCTCTAAGCAGACTGAAGAGGAGCCACATCTGCCGTGCTGCTGTGTCAACACAATTAGGGGGAGGCATGTGTACTGTGCCCTTATAACAAGTGATACTAACAGCAGTAGTTGCTTAGGTCTAATAGATTTatggaaatacaaacaaacaaagttgCACATTTAACCAGTGTTTTCTTCACAAGATTCTGACTGAGAAGCAAACCAAGCCATTCTGTACCACTTTCaattgtttaggtttttttttccaatcaacGTTTACGAGCATGCCAAAGATGTATTCAGTTGGCAGGTAACGTATTTTATTCAGACCGGATTCACACCTGACATCTTTGTTAtactgtcttttgttttctggcTGTGGAAGCCAATTCtgagaaacatattttttacttGATGTGATCTGACAAACTGTTCCCTTATTCAGTGCCTACCTTGATGGATGCATGAGAAAATAACAGAAGTGTCTTTGCCAGCATGTATAAACCACATCTAAAAGAAGGTTATTATGCATACCTTTTGGATTTTAGATGCAGATCCCAACTGACTTGTTCCCCTTTAATCAGATGAGTCTGTAAAGCATACGCCTTTAAACTGAACAGTTTCCAGATGGCGGTTGTAAATGATGAATGGTGAGGTGTGAAGGTAAATTTGCCCTTTTGGAAATTAGATTCCTCCCAATTTCCAGTCCGAACCCTGAGATAAGAATCATTAATTCAGTTTAGCACTGCCTCTGTTCTCATGTTGGCCTGTGTCTCCAGGAAGAGGGTAATCGAGGCTCAAAAAGGGTGCGTTCCCGCTGAGGAGCACCGCTTCCTGCGCATAATCCCAGTCATGATCTGCTGCCTCAGCAACACACTGCTCAAACTCTGTGGAAACGGTCAGGGCCAGGGTGGATGACTTGAAACCGAAGCATCTCCGAAACCACAATTGGGATGCAAAGTGTACAGCCATCTCCCATCACTGGCCTTGATTCGCACTGACAGGGCCAGCTGCTGATTGGGCGCTGGATGGATTTGCAATCTTAAGCCATGTACATGGTAGAGCTCCTGGAATCTTTTATTACATTGGGATGCCAACTAATAACTCATGTAGTTCCAGGAAAGCTGGCAAGGAATCAAGCCTCATTAGAAGTCAAACCACACGGGTTGGTTGCAAAGTGCTTCTGTTCTCGTCCTGCTAGAGTTTTTTCAGAGTTTGAACACACGGGTAAAAATGCTTACGGTTCTGCCCTGACTGCTTCTTTATACAGCTGCCATTTTATACCCAAAGTGAAGTAGCTTGGTCCTATCCAAATGGTTTTCCCGGTTCTTGGTTACTTTGGCAAAAGTACTCTCAAAGTTCATGTACtatgaaacagattttttttttttttcccttgattTCCAATACAGTAACTGTGTCCCATTTAGGAAGCGCTGTGGAATCCTTTTTGTAATTTCTGATTCTAATCTACAGCACCTCCATGGGCACACTGCCCTCCTATTGACTCCCAGGTGTCTGTAACAGGTGGACACTGAGACCCTTTATTCCATTGTGATGCCTGTTATAGCTGCCTGGTTAGTGTACGGATCGTGTTTGCAGGCAGATTGTTCACTTCCAAATTCCTCTCTCGTCCTCCCTCTACGTTTTAGGCCTTATTGTTTTAGAGTTTTTCAGGGGATGTTTGTTTACCCCTCAATTTGTACTCGTCTCCCTGACTTCTGATCAAGTGATAATGCATTCCATCCTTGTCTGagtgatggaaaaaagtgatGGAAAAATTGACTCCTGCTTATTTGCCAGCAGTGAGAGACCATTTGCAGagattattttttccagtaGACGAGCtctgtgttcttgtttttaaatattgtagtttaataaagaaaaaagttacaGTATATTTTAGTGCAGATTTGTTATGCACATTGacttttgtaatgctgttttcatttttgttgtggtGATTCACTAAGATGCCTGTTTCAGTAATcctaaatgcat

Function

symbol description
sufu Enables zinc ion binding activity. Acts upstream of or within several processes, including lens development in camera-type eye; negative regulation of smoothened signaling pathway; and smoothened signaling pathway. Part of Hedgehog signaling complex. Human ortholog(s) of this gene implicated in Joubert syndrome 32; familial meningioma; medulloblastoma; and nevoid basal cell carcinoma syndrome. Orthologous to human SUFU (SUFU negative regulator of hedgehog signaling).

NR:

description
PREDICTED: suppressor of fused homolog isoform X1

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0033333 fin development biological_process
GO:0035301 Hedgehog signaling complex cellular_component
GO:0008134 transcription factor binding molecular_function

KEGG:

id description
K06229 SUFU; suppressor of fused

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003197 True 4158 mRNA 0.49 13 14412751 14437585

Neighbor

gene id symbol gene type direction distance location
AMCG00003199 NA coding upstream 15847 14392589 ~ 14396904 (+)
AMCG00003191 NA coding upstream 139697 14270399 ~ 14273054 (+)
AMCG00003183 NA coding upstream 235295 14156501 ~ 14177456 (+)
AMCG00003184 NA coding upstream 293381 14114691 ~ 14119370 (+)
AMCG00003185 NA coding upstream 319737 14091908 ~ 14093014 (+)
AMCG00003202 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107690907,LOC107722222 coding downstream 8348 14445933 ~ 14455523 (+)
AMCG00003198 LOC107569416 coding downstream 19156 14456741 ~ 14459478 (+)
AMCG00003203 sfxn2,LOC107755483 coding downstream 44484 14482069 ~ 14491605 (+)
AMCG00003211 LOC108444470,LOC107567630,LOC106591328,LOC107700700,LOC108270891,LOC107702035 coding downstream 119309 14556894 ~ 14563419 (+)
AMCG00003210 NA coding downstream 134143 14571728 ~ 14592565 (+)
G141282 NA non-coding upstream 359069 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 427325 13981375 ~ 13985426 (+)
G141248 NA non-coding upstream 431652 13980837 ~ 13981099 (+)
G141245 NA non-coding upstream 462623 13949922 ~ 13950128 (+)
G141238 NA non-coding upstream 505665 13901775 ~ 13907086 (+)
G141401 NA non-coding downstream 6272 14443857 ~ 14445355 (+)
G141405 NA non-coding downstream 24582 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding downstream 63386 14500971 ~ 14508839 (+)
G141573 NA non-coding downstream 748486 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 752398 15189983 ~ 15190345 (+)
AMCG00003195 NA other upstream 112758 14283850 ~ 14299993 (+)
G141331 NA other upstream 228108 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 281476 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 669208 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1302117 13106456 ~ 13110634 (+)
AMCG00003207 NA other downstream 163732 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2026709 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 2089604 16527189 ~ 16559206 (+)
G141962 NA other downstream 3238694 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3283659 17721244 ~ 17725381 (+)

Expression


Co-expression Network