AMCG00003200 (arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841)


Basic Information

Item Value
gene id AMCG00003200
gene name arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14472344 ~ 14479936 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003200
taacAGCAGCTTCAGTGGGTGCtctctgcatttgtgtgtgtcgCAGCAAGATTCTGTCTGTATTAGCGAGTGTTTGTAATCATACTGTGTCAGTGAAATGAGTGCCGTGTCCACATTTCAGGGTCTGCTGTCAATCCTGCGCAAACTGAAGAGCGCCCCCGACCAGGAGGTTCGGATCTTGCTGCTGGGGCTGGACAACGCGGGCAAGACCACCCTGCTCAAACAGCTGGCCTCCGAGGACATCAGCCACATCACGCCCACGCAGGGGTTTAACATTAAGAGTGTCCAGTCGCAGGGATTCAAGCTGAACGTCTGGGATATCGGGGGCCAGAGGAAGATCAGGCCCTACTGGAGGAATTACTTTGAGAACACTGATGTGCTGATTTACGTCATTGACAGCGCCGACCGAAAGAGATTTGAAGAGACCGGACAGGAGCTGGCGGAGTTGCTGGACGAGGAGAAGCTGAGCGGGGTACCGGTCCTCATCTTCGCCAACAAGCAGGACCTGCTGACGGCCGCCCCCGCCTCCGAGATCGCCGAGGGGCTGAACCTGCACACCATCCGCGACCGTGTCTGGCAGATCCAGGCATGCTCGGCGCTGTCCGGCGAGGGCGTCCAGgaTGGCATGAACTGGGTCTGCAAAAACGTCAACGCAAAGAAGAAGTAGTGCTTTTCCTTTTGTCgtcttttttgttggtttggttttggttttttgGACTGGTGGATGAATGTAAACCTAAAGGGAAAGGACTTGAGATGGAACAGACAGATCAGAAAGCAACACTAAATTCTGACTTTGAACGAAACCTCGGCCACCATTGTTCGGCAATAGCAGGAGCAGCAACAGCCGTCGTTGGCATCCGGACCCCCTTGGGACCCATCTGAGATGCGCAGCAGTGCTCATgaactctgacctctgaccccacaGAACTGGGTGGCTGCAGGCaggtttgtttctgttcagCTTACTATGCTGGCAGGGTCTGTACTACATGGAtatgtgtctttttttaatgtctcaCTTCATGTCTGGTAAGGTTAGCTTAAACtaccaatataaatataaatttgtgCAGTGGTTAAAATCTTGGTTTAAATGTCTCACCTTCCCTTCCATGCTAAATGAAGGCCACTCTGTAGCCATACCATCAGCAGCCTTTTTATGCTATTGTTGAGACCAATTTTAAATCCCAGCCAATTGAGACCCTTCGTAGCAGCATGAGTAATCAAGCGACCAAACGAGGGGAGTGGCATTGTGAGGAAGAGACGCAATGGCCTCGGGGTCTACCGATTTGtattcacttattatttatttatcacttaATCAGTCTGAGCCAATTAAGGATTGTTCCCATGTTGTGTGTAAGTTGGGGTTTGGGAGGTCTATAAAACAGGACTGTAACTCTCCCGGATCCAGGAGGCCCACCACTGCTGTAGGGGAAAGCTGTCTCTTTAAATCTGGGGGTTTTCTGGTTAtcattccagcccagctcttcgTTACACAGCTGAGCCAATTATTGATGGAAATGTCCTATAAAGCAGTGTTGCTGTAGTGTggatttggtttattttagtcAGTCTGATTGAAGGAGGTTAAAAATGTGGAGTTGTAGAGCTGTCTCGGTGTGTGAGCGAGCCAACTTCACTCCCCTTTCATGGCCTGGATGCTTTCCAAAGATTGCTTCAATACCTGTCTTAGTTTCATCAACTGAAATGGTCCAGAGCTTTTTTAAACAAGATCTGAActtgtattattctgttttgtggGTTGATATGGTGGGGGTGGTTTGCTTGTGGGATGGCCCCAAATTTTACAAATGGTGATGATGTGGTCATCAACTGAAGAGAGACTGACTAAAATGCAACAGACACTGACTAAATTCACAATACTATAAAACCTGATGTATTGTAGCTCTTCCAAGAGCAGGGTTGGATACCAGTGCTTCATAGAAAGAAGCAGTTTATACTGGGTTgatactgaaaaacacaaaacccatTGTGGTATCGTGGGGGGGAATAAAGATATGAAAAGCCTTGACAGCTGCTACAACCACCCCTAGTGGAAAGCGAATCGCCTGACTCTGACTCATACAGTCTACAGGGGAGTTTCTTGCCAGAATCAATTGCAAGCCTGGAACTTGAGTGAAATGATGTGTAGGAACCCAATATTGTGTGATggaagtattacaaaaaaacaaactcgtGCTAGCCTTTGTGAACCACGTTGCGTCAGCTGGGTGGTGTGAGTTCATTGGCTGTGGCTCAGGATAGTTTGTGATCGGTCTATTGAAATGAAGAGCCCTTCAATTAAGCCACACAACAGGATGTGCAACAATGCAGCCACCCCAGAAAGCCAACTCAAATAGAGACTCCATATAGATTGCACAGAGCCTCGGAGAGAAGATTAGGGTGGGGTTTAGCTCACTGTCCTCAGATTGTGCTGTCTTCTAGGTCTGCCACTGCTGAGAGTATGTTCAGTATGTGTATTCAACACTAAGGGGGGGTCCTTTTTTCATTAATTCTCTCGTTTGGGAATGTGCAGtcagtatttattcaattaattttactATAGTACAAACAGCAGAGCCAAACCAAGATAGGCAGGGCTGATGCAGCTCTCACCGataacactacagcacagcgtacagcacagtgtatttaattaatttagaggAAGTAATACTtgtttatgtataaaataacaCTGCAGTAATTATGCAACTCAGAAAtacctttttttggttttgtttacatcTTGGGTTAATTTGCTATTTTTACAAACGTGTTGTGACATTTTGCTCCTCTTCGGCATCTGATCGCAGAGATAATTTGATTCGGAGGTTCTAATCCGTTTTGGAAATTTAATCTGCAACCCAGCGGGACCTGAAAGTGAACTAGAGgggagatgagagagaggggacgGTTTAAAACTAGTTGTGAGCGAAAGCAGTCGAACATCCTGAAAGATAGCTGTAGTAAAAGAATTCTGGACTATGAATAGAGAATGCAACATAGAAATCCCTAGTCAGTATCTCTGTCGTCTCCTTCCGTGCTTCTGTGTAATCAGTAAAGTGCTAGTGATAAACAATTTATAATCCCTATCAGCAAGTGACATCTGACCTCTCTGCAGTGCGCCCTCACAGCAAAATTCAGATTGCATTTTCATCAATTTTAGGGCCTCTCTTGAGCCTGACACTAGAGAGAGATAGATCTATAAACCAACGCGTCTCCTTTTGTGAATTCTcttctctgtgttttctgtgggaAGAGCATCTCGGCACTCTACACAGAGGCCAGAGTCCAGGGGCATGAGTTAATGCTTAGCAACTCTTTAGTTTTCTGCCCTCGATGATGAATATTTTTGCCCTTCCCATTCTTCGCAGCCACTGTGTCTGGGCTTGTGATGCGAATTGACTTACCTTGCCGACCGATTCACGCAGAAATTCACACCCACCTGAGAGAAACACTTCAGGAGAGAAAAGACTGAAGGCTTTTCCTCTCTCATGGTGACTACTCTCATACTCCTAGTAGTTGCATTGAGCTGGATTGAATCGAACTAAATTGTATTGAATTCACTGAATAACACAAGTAAAAGATATAGCAGCTTTTCCTCAACTAGAGTATCGACTTCATTGTGTTGAGGTCCTTTATATCCGACTGGCCTCTTCTCTGCACATATTTGCTCTGATTATCTACAGGAACCAAATTCCTTGGCTTTATTTGTCTGAGGAAACAAtcctaaaataaaattcaaccccttccctccctccctcgctctctctctctgcctgcacTTTATGCATCACAGGCTGTTCAAAGTGCAGTTGCCGTGCAGCAGTGAGATTTTGAATATAGGCCGATCAGTTGCACACTTGAAGTACACTTCACTCTCACGCtgagacagaaaagaaaaaaggaaagttatCTGGAGTTCTGGAAAGGTCTTCCTCTAGGATTAGTGTGGGGAAATTGCTGATCAAGCTTAGCTCTGGTTTCTCACTAACAGAAAGCTGTTAAGTTTTCATTAGGGACATGCAGTCGCCCACTGTCAGATCAACACTGTGTGTGGTATTGCTGTTGGGAACGAGATGGAGGTGGGTGATCCTGAAGCAAGAATCTGCCTGCTTATTGGATCCCTGTCAGGATGTAAAATTGACAGTTGTCCAAACAAGGCTGGGGCAGGGTGGGTAGATGTCGGCTGGGCGACCCTCAGTGCTCAGTACATCCAAGACTCCCTGTGGCTTCTCGGGCGCCAGCAGGGTCAAATTGGTATCAGGTTCCAGCTGTGTCAAATCCTATGATTTGTGCGATAGCCGTGCTGTGAGGGTTCTGGGGTAGCAGTGAGGAAAATAGCACTCGGCTGCTCTGACGCGTGTTTCAGAGGAGGCAGGCTGCGGGCCGGACCTCTTGGAGAAGCTCAGGAATCGTAGATCTGGACTGAGTTTGTTGCCCAATTAGCAAAACTAACTGGAGATTTCCAATGATTCCTAAGGatttcagtatattttttaaaatctgatagTCtatatgtttacaaaaaaaacctttataaaATCCCAATATTTTTGAGAGCTGCTCTGGTGCTATCAACTACAGATCTTACTCTATTTCTCTTCAATACATCGACATTCACTTCACAACACTATCGAAAAACTGATTTCAAATCCATTCACATTCCCTTCCCTATGACCTTGCAGGTGTAGATTACCAGACTGTGTTCATTTTGTCATGTATTAttgtcaatgttttgttttgatttcctgACGTTTTTTTATGCCTGGAAGTGAAATGAAAGGTCTGTCCTGTTTTATCCCAACGGTTTACATCTGGGCGTGTATAAAAAAAGATGTCTGgctgaaatgaataaatacacattagtagattctgtttgtgttattttcaagTGAAGGTTGGTGGATTTCAAGAGCTTGGTGTGCAATTATGTGGGCTGTTTGGAGGGAGTCTCTTTCACTGTTGAATGGACAGTTATTAGGGGCAGAGGGAGTCCATGCCAGAGGGCCAGATTCCCCCTTTAGAGACATGGTAGACAGATCACTGTACAATATGGAGGTCCCTCATTCATACCTGTTAATATCCCATCAAGACAACTGGCCAGGGAGCGGAGGGCAGAGGTTGGATGGGGCCTCCTCTGTGTCTTCTGCCTGCCGGTTCGG

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 3

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060271 cilium assembly biological_process
GO:0005813 centrosome cellular_component
GO:0032391 photoreceptor connecting cilium cellular_component
GO:0030496 midbody cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K07944 ARL3; ADP-ribosylation factor-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003200 True 5174 mRNA 0.45 5 14472344 14479936

Neighbor

gene id symbol gene type direction distance location
AMCG00003201 actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867 coding downstream 60418 14405461 ~ 14411926 (-)
AMCG00003196 NA coding downstream 86629 14385095 ~ 14385715 (-)
AMCG00003192 NA coding downstream 105121 14341770 ~ 14367223 (-)
AMCG00003194 NA coding downstream 166765 14290195 ~ 14305579 (-)
AMCG00003193 NA coding downstream 185999 14283405 ~ 14286345 (-)
AMCG00003205 NA coding upstream 10848 14490784 ~ 14496042 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding upstream 19357 14499293 ~ 14512805 (-)
AMCG00003204 pprc1,LOC107585240 coding upstream 36233 14516169 ~ 14531632 (-)
AMCG00003213 NA coding upstream 151421 14631357 ~ 14632106 (-)
AMCG00003215 NA coding upstream 196771 14676707 ~ 14773565 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 25839 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 94031 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 98175 14373967 ~ 14374169 (-)
G141319 NA non-coding downstream 341278 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 408173 14063800 ~ 14064171 (-)
G141517 NA non-coding upstream 150476 14630412 ~ 14669084 (-)
G141520 NA non-coding upstream 179483 14659419 ~ 14659991 (-)
G141569 NA non-coding upstream 674080 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 684018 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 737538 15217474 ~ 15217807 (-)
AMCG00003164 sec24c other downstream 1042020 13407272 ~ 13430324 (-)
G141004 NA other downstream 1592923 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1617003 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1732537 12728238 ~ 12739807 (-)
G140757 NA other downstream 2738582 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 189479 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 576707 15056643 ~ 15140819 (-)
G141826 NA other upstream 2268125 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5063701 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5322143 19802079 ~ 19876762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_01572679_01573885 ARL3.1.S, ARL3, ARL3.1 coding CI01000055 null 1572679 ~ 1574200 (+)
mexican tetra (Astyanax mexicanus) G34439 arl3,LOC103024595,LOC105908595,LOC106589841,LOC107684078 non-coding NC_035900.1 CM008303.1 4829153 ~ 4832503 (-)