AMCG00003201 (actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867)


Basic Information

Item Value
gene id AMCG00003201
gene name actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14405461 ~ 14411926 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003201
AAACACGGTCCAGCAGCACGCCTGCGCAGCACAGACCCGGCGACTCATCTGTACTGATACACCATGGAGTCCTACGATGTCATCGCCAACCAGCCGGTTGTTATCGATAACGGCTCCGGTGTTATAAAAGCTGGTTTTGCAGGAGATCAAATTCCAAAGTACTGCTTTCCTAATTAtgttggGAGGCCAAAACATGTGCGAGTTATGGCTGGTGCCTTGGAGGGAGATATCTTCATTGGTCCAAAAGCTGAGGAGCACAGGGGCCTGCTGACAGTGCGGTACCCAATGGAGCACGGCATAGTGAAGGACTGGAACGACATGGAGAGGATCTGGCAGTACGTCTACTCCAAAGACCAGCTCCAGACCTTCTCAGAAGAGcatCCTGTCCTGTTGACAGAAGCCCCCCTGAACCCTCGCCGGAATCGTGATCGTGCAGCGGAGGTCTTTTTCGAGACCTTCAACGTCCCAGCTCTCTTCATCTCAATGCAAGCTGTTCTCAGCCTGTACGCCACTGGGAGGACGACAGGGGTGGTGCTGGACTCGGGGGACGGGGTGACCCACGCTGTGCCCATCTACGAGGGCTTCGCCATGCCCCACTCAATCATGAGGATCGACATTGCCGGCCGTGATGTCTCCAGATACCTGCGGCTGTACCTGCGCAAGGAGGGCTATGACTTCCACACCTCCTCAGAGTTTGAGATTGTGAAGACCATCAAAGAGCGAGCCTGCTTCCTGTCCATCAACCCCCAGAAAGATGAGACTCTGGACACGGAGAAAGTGCAGTACACACTACCTGATGGCAGCAACATTGAGATCGGCCCAGCCCGCTTCCGAGCCCCCGAGCTGCTGTTCCGTCCGGATCTGGTGGGGGAGGAATGCGAGGGAATCCACGAGGTGCTGGTCTTCGCAATCCAGAAATCGGACATGGACCTGCGCCGGACCCTGTTCTCCAACATCGTGCTGTCTGGGGGCTCCACACTCTTCAGAGGATTTGGAGACCGGCTGCTGAGTGAGGTGAAGAAGTTGGCCCCGAAAGACGTCAAAATCAAGATTTCTGCTCCCCAGGAACGATTGTATTCGACATGGATTGGGTAA

Function

symbol description
actr1 centractin

NR:

description
beta-centractin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003201 True 1095 mRNA 0.55 10 14405461 14411926

Neighbor

gene id symbol gene type direction distance location
AMCG00003196 NA coding downstream 19746 14385095 ~ 14385715 (-)
AMCG00003192 NA coding downstream 38238 14341770 ~ 14367223 (-)
AMCG00003194 NA coding downstream 99882 14290195 ~ 14305579 (-)
AMCG00003193 NA coding downstream 119116 14283405 ~ 14286345 (-)
AMCG00003190 LOC105908129 coding downstream 135293 14260867 ~ 14270168 (-)
AMCG00003200 arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841 coding upstream 60418 14472344 ~ 14479936 (-)
AMCG00003205 NA coding upstream 78858 14490784 ~ 14496042 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding upstream 87367 14499293 ~ 14512805 (-)
AMCG00003204 pprc1,LOC107585240 coding upstream 104243 14516169 ~ 14531632 (-)
AMCG00003213 NA coding upstream 219431 14631357 ~ 14632106 (-)
G141374 NA non-coding downstream 27148 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 31292 14373967 ~ 14374169 (-)
G141319 NA non-coding downstream 274395 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 341290 14063800 ~ 14064171 (-)
G141304 NA non-coding downstream 341935 14063172 ~ 14063526 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding upstream 31905 14443831 ~ 14446505 (-)
G141517 NA non-coding upstream 218486 14630412 ~ 14669084 (-)
G141520 NA non-coding upstream 247493 14659419 ~ 14659991 (-)
G141569 NA non-coding upstream 742090 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 752028 15163954 ~ 15172448 (-)
AMCG00003164 sec24c other downstream 975137 13407272 ~ 13430324 (-)
G141004 NA other downstream 1526040 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1550120 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1665654 12728238 ~ 12739807 (-)
G140757 NA other downstream 2671699 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 257489 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 644717 15056643 ~ 15140819 (-)
G141826 NA other upstream 2336135 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5131711 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5390153 19802079 ~ 19876762 (-)

Expression


Co-expression Network