AMCG00003203 (sfxn2,LOC107755483)


Basic Information

Item Value
gene id AMCG00003203
gene name sfxn2,LOC107755483
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14482069 ~ 14491605 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003203
GAGGGCTACGCCACAGCGCACCGCTCCGGAAAGTGCTGCCTTCTCCCCGTGCACAGCAGGACGATGGACTTGAGCAAGTTTGACATTGACGCCCCTCGATGGGACCAGAGCACCTTCACCGGGCGGCTCAAGCACTTCTTCAACATCACCGACCCACGCACTGCCCTGCTGCCCGACGCACAGCTCGACCAGGCCAAGGCCCTTGTCTACAGCTGCAGAGCGGGCAGCGTGCCCCCGGGCACCACGGTGGAGCAGCTGCACTACGCCAAGAAACTGTATGACTCAGCATTCCACCCCGACACGGGCGAGCGCATGAACCTCATCGGAAGGATGTCCTTCCAGGTGCCGGGAGGGATGGCCATCACGGGCTGCATGCTGCAGTTCTACAGGACGGTGCCAGCCGTGGTGTTCTGGCAGTGGGTGAACCAGTCCTTCAACGCCCTGGTCAACTACACCAACAGAAATGCAGCATCACCCATCACACCAAAGCAGATCGGGGTGGCCTATTTCACTGCCACCAGCACGGCACTGGCCACTGCCGTGGGTCTGAACCTCTACACTAAGAAAGCCCCTCCGCTGGTCGCTCGCTGGGTGCCGTTTGCAGCTGTGGCGTCTGCTAACTGCGTCAACATCCCCATGATGAGGCAGCAGGAGATCCTGAACGGCATCGCGGTTGTGGATGAGAATGACAACAAGCTGGGCCATTCCAAGAGAGCAGCCGTCAAAGGAATAACCCAGGTGGTCATCTCTCGAATCGCCATGGCAGCCCCAGGCATGAtTGTTCTACCCATTATAATGCAGAGGCTGGAAAAATACAGATTCATGCAGAGGATTACATTTCTCCACGGGCCGCTGCAAGTGATGATGGTGGGAGTTTTCCTGATCTTCATGGTGCCCGCAGCCTGCTCACTGTTTCCCCAGAGATGCTCCATGGCCGTGTCCAATCTGGAGCCGGAGCTGCGGGACTCCATCAGGGCTCGCTACGGGGACGGCATCCGCTGCGTCTACTTCAACAAAGGGCTATGAGCTGGAAACGGGTTGCTGTCTGCACAGAGGGCGAGGATGGGCCCGGGAAAAAGatcttatttgattttaaacagaaTTCCTAGGTgagcggggggtggggggggggtgatttaGTGGTAATTAGAGCTGTGCACAAGATCAAGCCATCTGTTGTTCCCTTGAAAATGTTAGTGAAATGGGTTTATTTCCAGATCTCTCGTGCTGATGGTGTGACAGCTGGTTTTagttcaatataaaaaaaaacggGTGCTGTGAATTTGGCTTTGAGGGAAAATCCCACAGCTGTCTCCCAGTAGATGAACGCTGCTGTATTTCAGTCCTGCAGAGGGGAGGTGTGGGAATGTGACTGATTGATTGGAACAGTGTTGACCAGGCGATCTGCTCTGCCACGATCAGCTCCTGTTGTGCAGCCCCACAAAGAGCAAAGTTAATGAGCAAAATCCAGACATCACACCAGTGGAAGGAGAGACTGAAATATACTCACTCAGACAAATGTTTACAGGGGCCGACAGTGCCGGCCAGGTGTGCTCAGctccgggggtggggggttggggatCAGCTGTATTGTCCACTTAGTGTTTGAAGGGAGCACTGCCTTACATTGTGGATTGCCattgaagagagaaaaagacactTTCTAAAGCCTTCTAGGAAGCATCTGGAGACTTCAGGATCCCCATGATGACTCAGGAACTTCCAAAACAACTCATGAACTCAAATCCGTGGTAGAATAATATCATTAACAGGTGCGTGTGAGACGTGGTGGCTTCTGTACTGCTCACAGGGAAGGTGGATTTCTGTGCAAGAGAGGTTGGCATGTCTTACCTCCTCATCCCTGCCTCTGTGCCTTTGGAGCTGCCCAGACCCAACAGTGTGACAGTACGGCCTCTACTGGGCCTCGGGTCTCTCCAGCCACGACACCTCGTTACATTGTGGGCAACCAGAAGCTACACAGGCATCTCAACACCAAACCAGACCTCACGCTCGCTGATCAAATACCCGAGCTGAGGAACTCAATGCACGGCCCGATATGGGGATGGAAACAATTCCCATTGCACAGCGCAGGTCCATTTCAGACCTACACTGCAGGCCCCTGGACAAGTAACACGGAGGAACCAAAACCATTTCAGAGTTTACAAACTGTTTACTTGCATCTGGAAACTACATTTACAAAGGCATCTTGATGGGTATTAAAAATGCTACAGCTTTTGAAACCGAAAATGGCTTAGATTGGTATTCAATGGGGGGTCTTGTTTCCAGTCCCAACACAATCTGGTATGagttaattaaagaaaggacatgttttgaaaaaagaactaaaaagtgttttatttatacattgtatataaatatacaaaacaaaatccac

Function

symbol description
sfxn2 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN2 (sideroflexin 2).

NR:

description
PREDICTED: sideroflexin-2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23501 SFXN2; sideroflexin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003203 True 2395 mRNA 0.52 12 14482069 14491605

Neighbor

gene id symbol gene type direction distance location
AMCG00003198 LOC107569416 coding upstream 22591 14456741 ~ 14459478 (+)
AMCG00003202 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107690907,LOC107722222 coding upstream 26546 14445933 ~ 14455523 (+)
AMCG00003197 sufu,LOC107666454 coding upstream 44484 14412751 ~ 14437585 (+)
AMCG00003199 NA coding upstream 85165 14392589 ~ 14396904 (+)
AMCG00003191 NA coding upstream 209015 14270399 ~ 14273054 (+)
AMCG00003211 LOC108444470,LOC107567630,LOC106591328,LOC107700700,LOC108270891,LOC107702035 coding downstream 65289 14556894 ~ 14563419 (+)
AMCG00003210 NA coding downstream 80123 14571728 ~ 14592565 (+)
AMCG00003208 NA coding downstream 104054 14595659 ~ 14598653 (+)
AMCG00003212 NA coding downstream 152004 14643609 ~ 14644327 (+)
AMCG00003209 NA coding downstream 165792 14657397 ~ 14665563 (+)
G141401 NA non-coding upstream 36714 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 428387 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 496643 13981375 ~ 13985426 (+)
G141248 NA non-coding upstream 500970 13980837 ~ 13981099 (+)
G141245 NA non-coding upstream 531941 13949922 ~ 13950128 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding downstream 9366 14500971 ~ 14508839 (+)
G141573 NA non-coding downstream 694466 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 698378 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 725637 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 761235 15252840 ~ 15254844 (+)
AMCG00003195 NA other upstream 182076 14283850 ~ 14299993 (+)
G141331 NA other upstream 297426 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 350794 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 738526 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1371435 13106456 ~ 13110634 (+)
AMCG00003207 NA other downstream 109712 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 1972689 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 2035584 16527189 ~ 16559206 (+)
G141962 NA other downstream 3184674 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3229639 17721244 ~ 17725381 (+)

Expression


Co-expression Network