AMCG00003205


Basic Information

Item Value
gene id AMCG00003205
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14490784 ~ 14496042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003205
TTTGTCCCTGTGGATTATGGCATTCACATCTGCTGGGGTTGCCAAGCATCACGAGTCTCCAAGGGGCGCTTCAGCCTGCTTCGGCAAAACTTACAAACACACTCGTCCGCATCCATCAGCAGCGCTCGTCGGCCGAGGCTCAGAGATGTGCGAGGTCCAGTGCTCGGAGCGCGGCTGCTGCCCCGGAGGCCGGGCTCGGATGGAGAGCTACGTGTTCAACTGTGAGCTTTCTTCCAAAGTCCCGTTTTACACTTTCCAAGGAGACGAGGAGGAGAGTTTCGAGCAGTTCCTGGAGCTCCGCACACTGTGTCTGGGAGACGGAGCCAAGCCAGAGCACAACGTCGTGGAGGTGACGGCTCTCAACCACCGCGGCAAGAAAGTGTCGGTGCCCGTAGCCAACCTGCACCTCTCCTGCCTGCCCATGGTCAGTTTGGGGGAGTTTGAGCTGAAGACCCCTGTGACTTTCCGCCTGAAGTCCGGCACCGCTTATGAAGACGACGAATCTGACATgtcagaagaggaggagaatgaGGAAGAGATCGTCCCCATCAAGCCAgctaaaaagaaacagaaattgTAATCCTCAAAGGTACCACTCGCTCTGTGTGTCCTTTGTCTCGACTGTGGGACCACACTGAGGAGGTGaaggctggtgtgtgtgtgtgtgtatgtttgaaagagagggagagaaatccAGAGGTTTTCACTCAAACTGAACATATGTGAAGTGACTATATGCTGGGCGACACCAGTCCTCAGTGGCCGGACTCCTGCAggttttaatgtactttttaacagCAATACCTGTATCTGATGGGTGATCTGACCTATCCATATCACCATTCATGCTGTCCATGAGTTTTATCAGATTTCCAGGGGGGGCTTTTTCTCCCCTAGCCCTGTTCCTCTTAAGGAATTCTCCCCTTCTCTTTAGAAATATGTTCTTTAGATGTATACATATATCACAGCCACATTTTTTATATACGTGTGACCATTGTcatcttatttgttttcttttcagtacTGGTTGTCAGTTTGGTAAATATGCTGCAGAGTTCttacagtgttgtgtgttcGCAGACTGCCCATGTCCACGGGGCTCAGGAATAATGTACAGAGAGAGTGACTCTGGGTAGTGGCTCCACTGACTCCAAGCCATGCTCCAGTGGCTTctgtttatttcactgtaatCGTAAAGAATCCCCCCATTATGAAAGGAATTGCATGGCTATTGCACAGCTGATTCATCTATAATGTCACCCCCTCCACCTACCCACACCTGTGCTGCTGTTGGCCCTTGTTCAAAGAGCAGCAGTTCTCTGTaagtggattttgttttgtatatttatatacaatgtataaataaaacactttttagttcttttttcaaaacatgtcctttctttaattaactCATACCAGATTGTGTTGGGACTGGAAACAAGACCCCCCATTGAATACCAATCTAAGCCATTTTCGGTTTCAAAAGCTGTAGCATTTTTAATACCCATCAAGATGCCTTTGTAAATGTAGTTTCCAGATGCAAGTAAACAGTTTGTAAACTCTGAAATGGTTTTGGTTCCTCCGTGTTACTTGTCCAGGGGCCTGCAGTGTAGGTCTGAAATGGACCTGCGCTGTGCAATGGGAATTGTTTCCATCCCCATATCGGGCCGTGCATTGAGTTCCTCAGCTCGGGTATTTGATCAGCGAGCGTGAGGTCTGGTTTGGTGTTGAGATGCCTGTGTAGCTTCTGGTTGCCCACAATGTAACGAGGTGTCGTGGCTGGAGAGACCCGAGGCCCAGTAGAGGCCGTACTGTCACACTGTTGGGTCTGGGCAGCTCCAAAGGCACAGAGGCAGGGATGAGGAGGTAAGACATGCCAACCTCTCTTGCACAGAAATCCACCTTCCCTGTGAGCAGTACAGAAGCCACCACGTCTCACACGCACCTGTTAATGATATTATTCTACCACGGATTTGAGTTCATGAGTTGTTTTGGAAGTTCCTGAGTCATCATGGGGATCCTGAAGTCTCCAGATGCTTCCTAGAAGGCTTTAGAAagtgtctttttctctcttcaatGGCAATCCACAATGTAAGGCAGTGCTCCCTTCAAACACTAAGTGGACAATACAGCTGatccccaac

Function

GO: NA

KEGG:

id description
K11278 NPM3; nucleophosmin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003205 True 2147 mRNA 0.48 6 14490784 14496042

Neighbor

gene id symbol gene type direction distance location
AMCG00003200 arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841 coding downstream 10848 14472344 ~ 14479936 (-)
AMCG00003201 actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867 coding downstream 78858 14405461 ~ 14411926 (-)
AMCG00003196 NA coding downstream 105069 14385095 ~ 14385715 (-)
AMCG00003192 NA coding downstream 123561 14341770 ~ 14367223 (-)
AMCG00003194 NA coding downstream 185205 14290195 ~ 14305579 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding upstream 3251 14499293 ~ 14512805 (-)
AMCG00003204 pprc1,LOC107585240 coding upstream 20127 14516169 ~ 14531632 (-)
AMCG00003213 NA coding upstream 135315 14631357 ~ 14632106 (-)
AMCG00003215 NA coding upstream 180665 14676707 ~ 14773565 (-)
AMCG00003220 NA coding upstream 336637 14832679 ~ 14849623 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 44279 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 112471 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 116615 14373967 ~ 14374169 (-)
G141319 NA non-coding downstream 359718 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 426613 14063800 ~ 14064171 (-)
G141517 NA non-coding upstream 134370 14630412 ~ 14669084 (-)
G141520 NA non-coding upstream 163377 14659419 ~ 14659991 (-)
G141569 NA non-coding upstream 657974 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 667912 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 721432 15217474 ~ 15217807 (-)
AMCG00003164 sec24c other downstream 1060460 13407272 ~ 13430324 (-)
G141004 NA other downstream 1611363 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1635443 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1750977 12728238 ~ 12739807 (-)
G140757 NA other downstream 2757022 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 173373 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 560601 15056643 ~ 15140819 (-)
G141826 NA other upstream 2252019 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5047595 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5306037 19802079 ~ 19876762 (-)

Expression


Co-expression Network