AMCG00003207


Basic Information

Item Value
gene id AMCG00003207
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14601317 ~ 14605548 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003207
TTCTGATGCTGTAATAGTGCCGGTGTTGTGTGATTCACTGCTGACTGGGCATTAACCCGAGCCTGAGGATGGTCCGTATTTTGGCGAACGGAGAGATTGTGCAGGACGACGACCCCCGGGTCCGCAAGCCCCCCAACCGCCGGGAGGAACTCAATAATGTGCCTCGTCGGGGATTCGTGCGCCACACTGCGGGAGGAGCTCCTGCACAAAATGGCCCCGCTGCCCCCAGGGCTCCTGGGAGGTCAGCCTTCGCAGATATGAACCAGTTGCTGGTGAACCTCGGCTTCCCACGCTGGAACATGGGTGCCCAGGTCATCGAGCCCCTGATGTCCGTGATGATCCTGCTGGTCATCGCTGTGGTGGGGCTCCGGGGAATCCTGCTGCTGGGGCTGGTCTACGTGGTGATGACGCGCAGCCAGCGCTGAGCCCGGTTTTTGCCGCCCTGTGGCTCAGATTGGAAACTGCTTTTGTGATCTTAATCTGGGCTAAAACATGatttgactgacacactgtttGAGAAGGCACCTTCAATCTGGCAAAGGCATGTTTTGATATTCAATGGGTCTCCTGTGTAGCAAAGCAAATTTATCAAAACTGAAATTGTGACATGAAGTTCTACGAATGTAACTGTGCCATTTACAGGAAAGACTCCGAGGGTATATTCAAAAGCCTTAACGGGCAGTTTTCATTGAGCTGCCAAACGGTGTCTTAGGAGGATTTTTGTACGATATGGGAGTGTGACTACGCCTTATGCTTCCCACAGGCTGTTTTACTCTGGTGAGCACCATAGTAACTAAACATGCACTGAGGCAGAGACACGTTACTCTATTCATCCAATATATCTGTTTGGTGCTTTTTATAAAGTCTGTTTAAAAGTTTAATCCTGGAAACTCAAAGGAAAGATCAAGGGGCAGTGTGTCATGAGTCTCTTGGACCTAtgtgtggaaaaataaagagaTGCAACTTTTTCTTCTAATCACAATGTCAATTTCaatgatttcagtttttcactgAGAGTTTATTGTACATAGTTTAATGATCACaggatttattataatttcagttaaattctttttttttctccagttctTTCAAATATGGATAAGTACAAGATATTATCTGAGGCATTGAGTTCATTATTGATTTACTTATGCATAAAAGCATTCTCTGGCACTGTCCTTAATTGGGACCATGTAATGaagtcaatattattttaaatgaagatgatgatttttttttcagatttacgGGAATGTCTCAGGTTTTTATCTCAGGTGCAAGTCAATAATCAGATTGCATTTCAAAGTATTGTAGTAACCAATGCACATTTAATCTAGTGCCTAGAATGCTTTTTTTGTAATGACCTAATATAGCAATCTACTGTATTTGGTATCATAATTCTGAAGTTACTGACCTtgagtgatgatgatgattattatttattttaattgtaaataataaatacaaattatattgcaGAAAATCATcctaaaatatttaacataattgGAGCACATGATGGAAAATTTCTTtttagaaaagtatttgaatGCGTTTTATAGCCTATATAAACTGGAAAACAGGTGTACCCTTTTCTTGAAGAAATACTCGTATCAGACtaagaattaatttaataactcTATACAAGTAGGCCTAGATGTTCTGAATGGAgacaatgtaaaattaatatggCTTTTGTATGAATTTAAAGTTACAAACAATGACAGCAAAATTGTATGTAGCATAACTTCAGGTACAGTTTGTGCTTCTTTCAAATGAATGAAAGGCCAATATACAATATGCATGTTGTATTATCAACGGTCTTAATGGAATTATATGTGCTTATTattggtgtatttattattttaaataacattttgacttttttttttatataaagttcaGTGGTGTAGAGTGAAACATGTAGATGCCAGTTTTTACCATGTTAAAATGTGATAAACTAGTTGCTTGTATGAAACACGTTAAATGACAAATTTGGGATGATGATGAGGGATGCAGTTATGTCCTGTTTGTGTCATGGCTCTTAACATGGTCTTTCATTACCCTATCCCCTGTGACAACATCTCAAATATGTCTTACATTTTGCATGCTTTACAGCTTATAGCACAGTTTGACTTTATCCCtgaattggaaaaacaaaacaaaaaaaaacaccttttcagTGAATCAAGTATTTGTATATGAAATTACtctattaaaaatatgatgatTTACACAAGTATGCCTCCTGTTTGAATTACACGTGTGATCTACAGAAGCCATTTTACATAAGATGATATTGTCCAACCAATTTGAGTTTGAG
>TU177906
GTGGGATTCGCAAGAAAAGAAAGACGGGTATCGGTAGAGCCGAGTGCCGGTGTTGTGTGATTCACTGCTGACTGGGCATTAACCCGAGCCTGAGGATGGTCCGTATTTTGGCGAACGGAGAGATTGTGCAGGACGACGACCCCCGGGTCCGCAAGCCCCCCAACCGCCGGGAGGAACTCAATAATGTGCCTCGTCGGGGATTCGTGCGCCACACTGCGGGAGGAGCTCCTGCACAAAATGGCCCCGCTGCCCCCAGGGCTCCTGGGAGGTCAGCCTTCGCAGATATGAACCAGTTGCTGGTGAACCTCGGCTTCCCACGCTGGAACATGGGTGCCCAGGTCATCGAGCCCCTGATGTCCGTGATGATCCTGCTGGTCATCGCTGTGGTGGGGCTCCGGGGAATCCTGCTGCTGGGGCTGGTCTACGTGGTGATGACGCGCAGCCAGCGCTGAGCCCGGTTTTTGCCGCCCTGTGGCTCAGATTGGAAACTGCTTTTGTGATCTTAATCTGGGCTAAAACATGatttgactgacacactgtttGAGAAGGCACCTTCAATCTGGCAAAGGCATGTTTTGATATTCAATGGGTCTCCTGTGTAGCAAAGCAAATTTATCAAAACTGAAATTGTGACATGAAGTTCTACGAATGTAACTGTGCCATTTACAGGAAAGACTCCGAGGGTATATTCAAAAGCCTTAACGGGCAGTTTTCATTGAGCTGCCAAACGGTGTCTTAGGAGGATTTTTGTACGATATGGGAGTGTGACTACGCCTTATGCTTCCCACAGGCTGTTTTACTCTGGTGAGCACCATAGTAACTAAACATGCACTGAGGCAGAGACACGTTACTCTATTCATCCAATATATCTGTTTGGTGCTTTTTATAAAGTCTGTTTAAAAGTTTAATCCTGGAAACTCAAAGGAAAGATCAAGGGGCAGTGTGTCATGAGTCTCTTGGACCTAtgtgtggaaaaataaagagaTGCAACTTTTTCTTCTAATCACAATGTCAATTTCaatgatttcagtttttcactgAGAGTTTATTGTACATAGTTTAATGATCACaggatttattataatttcagttaaattctttttttttctccagttctTTCAAATATGGATAAGTACAAGATATTATCTGAGGCATTGAGTTCATTATTGATTTACTTATGCATAAAAGCATTCTCTGGCACTGTCCTTAATTGGGACCATGTAATGaagtcaatattattttaaatgaagatgatgatttttttttcagatttacgGGAATGTCTCAGGTTTTTATCTCAGGTGCAAGTCAATAATCAGATTGCATTTCAAAGTATTGTAGTAACCAATGCACATTTAATCTAGTGCCTAGAATGCTTTTTTTGTAATGACCTAATATAGCAATCTACTGTATTTGGTATCATAATTCTGAAGTTACTGACCTtgagtgatgatgatgattattatttattttaattgtaaataataaatacaaattatattgcaGAAAATCATcctaaaatatttaacataattgGAGCACATGATGGAAAATTTCTTtttagaaaagtatttgaatGCGTTTTATAGCCTATATAAACTGGAAAACAGGTGTACCCTTTTCTTGAAGAAATACTCGTATCAGACtaagaattaatttaataactcTATACAAGTAGGCCTAGATGTTCTGAATGGAgacaatgtaaaattaatatggCTTTTGTATGAATTTAAAGTTACAAACAATGACAGCAAAATTGTATGTAGCATAACTTCAGGTACAGTTTGTGCTTCTTTCAAATGAATGAAAGGCCAATATACAATATGCATGTTGTATTATCAACGGTCTTAATGGAATTATATGTGCTTATTattggtgtatttattattttaaataacattttgacttttttttttatataaagttcaGTGGTGTAGAGTGAAACATGTAGATGCCAGTTTTTACCATGTTAAAATGTGATAAACTAGTTGCTTGTATGAAACACGTTAAATGACAAATTTGGGATGATGATGAGGGATGCAGTTATGTCCTGTTTGTGTCATGGCTCTTAACATGGTCTTTCATTACCCTATCCCCTGTGACAACATCTCAAATATGTCTTACATTTTGCATGCTTTACAGCTTATAGCACAGTTTGACTTTATCCCtgaattggaaaaacaaaacaaaaaaaaacaccttttcagTGAATCAAGTATTTGTATATGAAATTACt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003207 True 2323 mRNA 0.38 2 14602133 14605548
TU177906 False 2239 TUCP 0.39 3 14601317 14605437

Neighbor

gene id symbol gene type direction distance location
AMCG00003208 NA coding upstream 2664 14595659 ~ 14598653 (+)
AMCG00003210 NA coding upstream 8752 14571728 ~ 14592565 (+)
AMCG00003211 LOC108444470,LOC107567630,LOC106591328,LOC107700700,LOC108270891,LOC107702035 coding upstream 37898 14556894 ~ 14563419 (+)
AMCG00003203 sfxn2,LOC107755483 coding upstream 109712 14482069 ~ 14491605 (+)
AMCG00003198 LOC107569416 coding upstream 141839 14456741 ~ 14459478 (+)
AMCG00003212 NA coding downstream 38061 14643609 ~ 14644327 (+)
AMCG00003209 NA coding downstream 51849 14657397 ~ 14665563 (+)
AMCG00003218 NA coding downstream 131806 14737354 ~ 14765347 (+)
AMCG00003217 NA coding downstream 182577 14788125 ~ 14800222 (+)
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding downstream 203070 14808618 ~ 14826815 (+)
G141405 NA non-coding upstream 84807 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 92478 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 155962 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 547635 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 615891 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 580523 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 584435 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 611694 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 647292 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 2193411 16798959 ~ 16801312 (+)
AMCG00003195 NA other upstream 301324 14283850 ~ 14299993 (+)
G141331 NA other upstream 416674 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 470042 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 857774 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1490683 13106456 ~ 13110634 (+)
AMCG00003257 ablim1 other downstream 1858746 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1921641 16527189 ~ 16559206 (+)
G141962 NA other downstream 3070731 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3115696 17721244 ~ 17725381 (+)
G142078 NA other downstream 3983026 18588574 ~ 18692204 (+)

Expression


Co-expression Network