AMCG00003209


Basic Information

Item Value
gene id AMCG00003209
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14657397 ~ 14665563 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003209
ATGCtttcctgtttctgttttgCCGTGCAGAGTGCCATGGAGGTGTACAAAGAAATCCTGCTGGTGTATTTGGATGACAGCCGGCGGTTTGTGAATACGCAGTGCCAGGGGCTGGAACCGTGGCAGATCATCGCAGTGACGATGGGCTTCACACTGCTGGCGGTGTGGCTTCGGGGGTTTCTCTTCCAGCAAGACAgTTTGAAATCAAGAATTAAGAAGCAGATTTTTAAGATTATAAGAAAAATCCCATTCATTGGTGCTACaATTCAGGCTCAGCTGAATAAAGCTCTAGATGACATGGCATCCAGTCTGTTCACCTTGAAAGATGGAATGAGCTACACGTGCGCCCTGCCGGTCCAGGGCCTTTTGCAGTCCGAGGTTCTGGAGGAGCTCAAACAGTACAGTGCCATGGGGGAGGTCCAGTGGGAGCAGGGCAGGGTCTCCGGTGCCGTGTACAGTGGAGATGAAACCCTCACCAAGCTGCTAGTGAAGGTTTATGGGGACTTCGCTTGGAGCAACCCCCTGCATCCTGATATTTTCCCCGGTGTGCGCAAGATGGAGGCCGAGGTGGTGCGAATGGCCTGCACGCTCTTCCATGGGGGACCACAGTCCTGTGGCACGGTTACATCTGGAGGTACTGAAAGTATCTTGATGGCTTGCAAAGCATACAGGGATCTGGCAAGAGAGCGTGGCATCAAACACCCAGAAATCCTTGCACCTATCAGTGTCCATGCAGCGTTTGACAAAGCGGCACACTACTTCGGCATGAAAATCATCCACATCCCCCTGAATCCGACAACCATGCAAGTGGACGTGAAGGCGATGAGGAGCGCCATATCCAAGAACACCGCCATGCTGGTCTGCTCTGCTCCTCAGTTCCCTCATGGTGCTATGGACCCTGTGCAGGAGGTGGCAAAGTTGGCTGTCAGATACAACATTCCATTCCATGTAGATGCTTGTTTGGGTGGCTTCCTCATAGTTTTCATGGAAAAGGCCAACTACCCACTTGCTCCGTTTGACTTCCGGGTGAAGGGGGTGACCAGCATTTCAGCCGACACGCAcaagTATGGTTTTGCCCCAAAAGGTTCTTCTGTAGTGCTGTACAGTGACAAGAGTTACAGACATTACCAGTTCTTCGTGGCCCCAGACTGGCAAGGGGGCATCTACGCATCTCCCTCCATAGCTGGCTCTCGACCAGGAGGCATCATTGCAGCTTGCTGGGCCACCATGATGCATATGGGGGAGAAGGGCTACGTTGAGGCCACGAGGAAGATTATTAAAACCGCACGGTTCATTGAAGCAGAAGTCCGCAAGGTGGACGGGTTGTTCGTATTTGGCAAGCCTGAAGTCTCTGTTGTGGCTCTGGGCTCCAAGATTTTTGACATTTACCGGTTATCAAATGCCTTGACCTCGAGGGGTTGGAACTTGAACACACTGCAGTTTCCTTCAAGTATACACATCTGTATAACACTGCTGCACACAAAGCCCGGCGTCGCTGATAGGTTCGTCAAAGACGTCCGAGAGTCGACGGCAGTTATCATGAAAAATCCCAAAGAGAAAACCACTGGAATGGGAGCCATCTACGGCATGGCACAGTCGATCCCCGATCGCTCAATGGTGACCGAGATCTCTCAAGGTTTCCTAGACTGCCTCTACAGCACAGACCTTCCCTCCACAGAAAATAAGCACATGAACGGCACCTCCAAGACTCACTGA

Function

GO: NA

KEGG:

id description
K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003209 True 1716 mRNA 0.52 12 14657397 14665563

Neighbor

gene id symbol gene type direction distance location
AMCG00003212 NA coding upstream 13070 14643609 ~ 14644327 (+)
AMCG00003208 NA coding upstream 58744 14595659 ~ 14598653 (+)
AMCG00003210 NA coding upstream 64832 14571728 ~ 14592565 (+)
AMCG00003211 LOC108444470,LOC107567630,LOC106591328,LOC107700700,LOC108270891,LOC107702035 coding upstream 93978 14556894 ~ 14563419 (+)
AMCG00003203 sfxn2,LOC107755483 coding upstream 165792 14482069 ~ 14491605 (+)
AMCG00003218 NA coding downstream 71791 14737354 ~ 14765347 (+)
AMCG00003217 NA coding downstream 122562 14788125 ~ 14800222 (+)
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding downstream 143055 14808618 ~ 14826815 (+)
AMCG00003221 NA coding downstream 213185 14878748 ~ 14886460 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding downstream 311136 14976699 ~ 14987925 (+)
G141405 NA non-coding upstream 140887 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 148558 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 212042 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 603715 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 671971 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 520508 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 524420 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 551679 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 587277 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 2133396 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 51849 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 357404 14283850 ~ 14299993 (+)
G141331 NA other upstream 472754 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 526122 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 913854 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1798731 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1861626 16527189 ~ 16559206 (+)
G141962 NA other downstream 3010716 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3055681 17721244 ~ 17725381 (+)
G142078 NA other downstream 3923011 18588574 ~ 18692204 (+)

Expression


Co-expression Network