AMCG00003210


Basic Information

Item Value
gene id AMCG00003210
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14571728 ~ 14592565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003210
GTTAACAGTAGGTAGTATTAAACAGTTGACCAGACCTAAACTTCACACCACGGGCTCTCAGGTTTCCTTGGGGAGGCTCACACTTGTTGACATCAGTAAAGCTGAACTTTTGCATTCTCATTCTTGGCTCTTCTGTTACTTCTCTGTGGGGTTGCATTCATCGAACAGCAGGCGTGAGCTAGTGCTTTCATGATGAGCCTGTGACTCTTGTTGGCGTGACTGTGGCCCTACAGCGAGACATGGCCGTATGTTTGTGGAGCCCAAGCCTGCTGGGACTGGCCCTGGTGACTGTACTGGGCTTCTGTGATGGTCAGCAGGTCTCCAGCTCCTGCTCCAGTAAACAACTGGCCCTGGACAACCTCAAGGATACCGTGTACTGGCCTGCCCCGAGCAATGACTCTGGCCTGGGCCCCCTCTCCAGCTTTGTCCAGTCCTTTCTGGGGACTGTCCAACCCAACCCCTTTCCTAAAGTGATAAAAGACACCACTTTAATCACACACAAGGAGACCACACTGAAGATACTGCAGTATGAGGTGGGATTTTTGGTGTGTACCGCGATCGGGGTCCTCTTCATCGTGCTCGTCCCAGTCGTGGGCTACTTCTTTGCCTGCTGTCGCTGCTGTGGAAACTGCGGTGGCAGGATGCACCAAGAACAGACCAAGAGCATCCCCTGCAGGCGCCGATGCCTGTACCTGGCCACTGTGGTGATCACAGCCATCTTACTggtGGGGAATATTTGCATGTTCTTAAGCAATGCAAAGTTTACAGTGAACTTCAATCAAAGCCCGGAGGTGTTCAATAACACAGTGGACAATTTGGACACATTCGTCACAACGGTCCCTCAGCAAATCGACACAGTGGTGAATGAAAGCTCCTCTGCCGTGAACGCAGTCCAGAAGAACTTGGATGATATTGGCCCTCTACTGGGCAGACGGTTGCAGCAAGTCCTGAACACTAGTTTCCAACTGGCGCTGAATACGGTACTCAACATTTCCCAAGAGCTGAACGGTGCCAGTTTCCAGGTTGGAAGGCTGAACCACACCCTGCAGAGTCTCCAGTCCAAGCAAGTGGAGCTGCAGAACAATTTCACCAGCCTGATCGGCCAAATCAACAGCACGCTGCAGAAGGTGAATTGCACCAACTGCAGCAATTTTTTGTCACAGCTGGAAGGCCTGACTTTTGACCTGGACTTCAATGGGATCTCCCAACTAAACGAGCTGCAGTTGGTGTTGAAGAGTGCGGAGCAGGCTAACCTAAGCTCTGCAGCAAATACTGGCCAGGACTTTTTGAACAGTATTCCACAGAAAGTGACCGAGCAGAGCAACGACATGGTAAACGAGTCGAAGAAACAGCTGCAGGAAATTGAGAAACAAATCTCCCAGGTTTCCAAAGACATAGACCTGCACAACCTGACTTTCATCTCTGAAGATCTGCAGAAAGTGAGGAAAGAAGCTGGCCAGTATTTcccagatattttaaaaattgacAACTACAGGTGGATCGCAGGTTTGGTTCTGAGCTCTGTGGTTCTGCTGGTGGTGGTGTGTAATATCCTGGGCCTCCTGCTGGGCCCAATTGGACTGAAGAGCAGAGCTGACCCCACTCAGAGATCGGGCATGGCGGACTGCGGGGGCATGTTCTTCATGGTTGGTGCTGGCTTCAGCTTCCTATTCTCCTGGCTCTTTATGCTGGTGGTGCTGATCCTGTTCCTGGCTGGGGGGAACATCTACACGCTGGTGTGTCGGCCCTGGGGGAaccaggagctgctgcagTTGTCTACAATTTTGGGCGTGAAGAGCAACCTGACCTTCACAAAACTGTACAAGGACTGTCATGACAACATGTCTCTGTGGAAGACACTGCACCTGAGTGAGCTGATCGACCTGGACAGCCTCCTGAATGTCAGTACGCCGTATGAATGTGCCACTGTTTACCATCCTGccctccccatctctccacAGTACACCGGGCAGATTGAGGCAGCCTTTGACATGGACAACATCACGCTGCCCCCAGTCACTCTGCTGGGTGCCGCGGCCCGCAGTCAGCTGACGAACATGTCCAACATGGCAAAGCATATCGACTTCACCAACGTCACCCAGAAGAATGACCATGGTGTGAAGAGTGAGCTGCAGAATAATGCATATGATATGAGGCGTCTGAATAACTGGACCCAGACAAACATCACGCCACTCCTGGTTGATCTGAACAGCATCGTCACGAATCTGAGTGCCTTCTCTTCAGGGATTCCTGGAATGGTGAACAATGTAGTGAGTGAAGTGGATAACGCTCAGACATTTATAAATACCAACACTTCGGGAGTCATCAAAACAGAAAGTAAAGCATTCCTAAACTGTCAGATCAGATACTTTGAGACGTATGCTGACTGGGCAAAAACAGCTATCACTCAGGACGTGGGCCGCTGCAGACCTGTGGCCGACGCGGTGGATGCAGCTGAGGTGGTGATGTGTTCATACCTGGTGGAAACCATGAATGGCTTCTGGTTCAGTCTGGGCTGGTGTATGGCGTTCCTCCTTCCCAGCATCATCCTGTCCATCAAACTGGCCAAGTTCTACAGGAGAATGAAATACACTGACGTCTATGAggaccacaTCCCAATGACTGACATGCCAAGAGCTGTTGTGAAGAGATAGCGTGAGGGAAAACTGGGAGAGGCTGCAGGGTGAGAGGCGACGAGGGGCCTAGATCAATCTTGGATTCCCCAAATACCCCCCCCGAGACTAAAAAGCATGTTACTCCCTGGCTTCACACTAAAACAGAATGCCACTCTGTACAGCTCGGGTACATCACAcctatatggcaagccaaattatcatttagagatatcttcaattgcatttcaagatatctttaaataatgtacagatatatctaaattaatttgagatgTCATTTATctccatttacagatatctaaaatcaatgtaaagatatcttgaatacatttaaatacattttgagatatctgcaaataatttcaagatatctttaaatgacttcctgtatgctgagattatcacttcctgtttactctTTCAGGtacatagaaataaattaacatgtgAACGggagtgataatcttgggctacatacaggaagtcatatTTGCAGATTGCACATATCTCtaattaatttcaagatatctctaaatatgtaaagatatcttaaatacGTTTACAGATTTCtttgaatatttaaagatatcttgaaatgcagttATAACTTGGCTTCCTATACACCTAAACCATGATTCATTTCATAGACCTCTCCTTGCTCCCAAATCTTCTACATCTGTATACATTAACTaaagggatttttattttgacgTCAGGCTGTCTGGAATTCCAGTGggaaataaaatggtaaaactACCCACACACTGTTTAATTCCATAGTCAAGGAGATTACATACACAACTGTACTGTAGTTGCAGTTTTAAAACTATGGTGGACATAGTTCTAGAACAGCTCCAactatttgttttactgtagtgGCTGTGAGATCAGCAAAAATGACTggatttccttatttatttctcGGCAAACGTCCTTATCCAAGGGTGACTCAGAATTTACAGTTATAAGATCAGTGCTGAAATATTTCCAACAATCTGTACTGAAAGAACAATactgtaaattaatcaattttctcTAGTTTATGAACTGCAGTACTTGACTATAGTATGTCTGCTAATCAAGAATTGTCTCACTATCAATCTGCCAACATGCCCTgacatttgcattgcattccTAACAACTGTGTAATTGAAAgcattttatatgtgtgtgtgtacgtgcaAAACAGTTCCAAatgacagaatatttttttgattttgcttgtatttattttttatggtttgaTACCGTTTGTCTGATTCTGTTTTGAACGACTGCAGGTGTGGTTTCTTAAAGCACAAGAAGAAAATTATCTCAGTGGTTCAACAAACACTGAATGTACTGTGAGGAGACCAACATTGTGTGAAGTATTGTACTAAACGCATAGCTGTGAGTGCCTTACAACCACCATTAGAAATGTCAATTTAATGAGgatttaaacactttatttttcgTAAAGAACATAATTTTCGGAACTTTTGATAAATTTATGATTgcactttttaataatatattttttgatactTTTGGTGGAAAATGCTTGTCTGAACccttttaatatgtatattgacATTAATGTGAAGTAAAGCCATAAATTATTCTGACTTTGATGAGAAATAGTTCAAACAGAAATATGTCCTTTGTTTTCAGATCACCATTGATTGTGCTAAATTgggtaaatgtatatttaattcataCTCTGTTTATTCCACATAAAGATCAGAAgacttacatttgtaaagtTTTGTGCATTTCAGTTGTGTCTTGACATTCCTGGTGAACCCTGGCTTAATTTATATAGACCTTTTTGAATCACTACATTTTAGAGGGctgcatttagaaaataaatctccagAGGGCGCTGTAGACTTAATATAGATCTTAATTTTTAGCCAATGTAGGAATCCACAAACTTggtcataataaaatacagcattgCATTATTGGTACAGCTACAGATGTGCTCTCATTTACTTCATTAACCTGATTGACACGATCTGTAGCCAGTGAAGactccaaaaaaacaacaacggaAGGACGTGGCTCTCCTGGACCAGAGCTGGAATATGAAAAGCCAATACTGAGGCCTCCTGGAAGATCTTCCTGTCAAGGACTAAAAACAGTCCACCTCATATTTAGTGTCTCCTGACGAATCTGCCAAAATCTACATGGATGCAATGCTGCAATTTATTAAGCATCTACATATAGCCAGTttatctttctttgtttttcgtTTGTTGATGCAGATTCAGCACTGTTTATTAATTGTACTGGTGATTTGttctttttgctttgctttccatTTAATATTTCTGATAGAAACACAGACAAAGCCTAAAAATTATACTGccgaaataaatacattcaaatcaCAGGTACGAGATTAAGAGTTCTCTCAGTGAGTACATGCATACTCTTGCCTAGAAAcacttttgtatatatatatttacataaaccaAGGTTCACTGTCATTCATCCTTTCCAAAACAGAAAGGGAGGGGGGTCTGAGCTCTTCATACCTTTCCTGTCTCCTGTTTGAATCAGTTTTGCAGTTGTTTGTAATAAATCAGGTTTCATTGTGACGTTGAACGCACTTCACCTCACACAGGTCTGACATTTCTGCAGGTATGAGAAGGAACTGATATTTTAGATGTATAACTGTTGGGGGATTTGCTTTCAGCATTAATCTTGCTCAGATGTAACTCCTTCATGAGCAGACAGGCCATTTGACTCCCATCTGAATCTAAATTTGCTTACAAAGCATATAGAAATGAAATCATTGTGATGtgtttcatataaataatagtCAAACCTTTTTTGAGGTTTACTGAAAAGCTTGAGTTTGATTAGAATTTAGTGTGACAAGCTGACAAATTGCCTCTAACTTGACGGGACTTGAAACATTGGGATTTTCATTTCAAGATCAGTCGATTAGGTTTTCTGTGAGTCTGATGACTTGGTAATTTGAAGGATTATAAAATCCATCTCCCattgttttgcagaaatgcCCAAATGCTTCCAGTCTTTACTGCCTTTTTGTCCCTTCAGTCTAAAGGATTAGAGTCTCCTTTCCTTGTCACCACCCCCTACACATTCACCCCGGATCCTGTCTGAACTTGCTGGTTATACAAGTAAGACGGAATGCAAGAGGATGAGTTTTTCCTTGGGGTCGTTTTGGTAAAGCACTTGATATCGCATTTCCCTATATAACACCACACACAAATTGGCTATTGTGGTGCTGTAACCTTGAAATGACACAGATGTTCCTCAGTTTTGTTTCCATGGACGTCTGTATTTTTTGGCATTCGTCATATAAACATCGCCTTTAGGAAATCCTTTATATAAGTGCTGCTTTTATAGCAAGGGATGAGGTTATAGGTGAAGAGAGGCAATTATTAATGCGGTTACTTCCCTGTGTATTGGACTAAAGAGGCATTCTAGAAAAATTAGGCTATTAAGTTGTTTAATGTTCATGTCATTCAAAAAAATGGGAGTCCTTGGCATATGCTTCTATGAGTAGCATTTATagggttaaatatatatatagcaattgagataattcttttttttttttttaatcatggtGCCAACTGCCAGTACTGATTTACTGTTATGGAGTTTTGgtgtatttaataaacataGACACATACTTCTAATTTTATGTTGCatgttttcattgctttattatAGAGTCATGCCAGCAACTTTCTATTCATTAAATCAGAAATTATAGAGAGACATTTCCAATGCGGTTACTGATCTTTAGCTtcaaaaacactacaaataaaatagtccAAAGTCACTCACGCAATCGAAGATCAAAAAGATGATGTCAGCTGAGTCCATATACCTGGGTGACTGTCTACCCTCCACACGAAAGAAACAACAGCTCCTTCAGTGTTTCACAATCTGAGGTGTTGCCTCCTGTTAATTTTACATAAGGTAAAAGCTAAAGTTATGAATAAAATCATGGATAAGTCATCATGGACTACTTAATGCCCAGGTTCTGGCAATCCTATCATTTTTTTATAACGGACATATTCTGAAAATGATTCCCATACATTAATTATTCTCACCGGTACaagatttatcttttttttttatcaatggTTATTGGCAT

Function

GO: NA

KEGG:

id description
K15602 PROM2; prominin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003210 True 6756 mRNA 0.41 23 14571728 14592565

Neighbor

gene id symbol gene type direction distance location
AMCG00003211 LOC108444470,LOC107567630,LOC106591328,LOC107700700,LOC108270891,LOC107702035 coding upstream 8309 14556894 ~ 14563419 (+)
AMCG00003203 sfxn2,LOC107755483 coding upstream 80123 14482069 ~ 14491605 (+)
AMCG00003198 LOC107569416 coding upstream 112250 14456741 ~ 14459478 (+)
AMCG00003202 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107690907,LOC107722222 coding upstream 116205 14445933 ~ 14455523 (+)
AMCG00003197 sufu,LOC107666454 coding upstream 134143 14412751 ~ 14437585 (+)
AMCG00003208 NA coding downstream 3094 14595659 ~ 14598653 (+)
AMCG00003212 NA coding downstream 51044 14643609 ~ 14644327 (+)
AMCG00003209 NA coding downstream 64832 14657397 ~ 14665563 (+)
AMCG00003218 NA coding downstream 144789 14737354 ~ 14765347 (+)
AMCG00003217 NA coding downstream 195560 14788125 ~ 14800222 (+)
G141405 NA non-coding upstream 55218 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 62889 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 126373 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 518046 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 586302 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 593506 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 597418 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 624677 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 660275 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 2206394 16798959 ~ 16801312 (+)
AMCG00003195 NA other upstream 271735 14283850 ~ 14299993 (+)
G141331 NA other upstream 387085 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 440453 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 828185 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 1461094 13106456 ~ 13110634 (+)
AMCG00003207 NA other downstream 8752 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 1871729 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1934624 16527189 ~ 16559206 (+)
G141962 NA other downstream 3083714 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 3128679 17721244 ~ 17725381 (+)

Expression


Co-expression Network