AMCG00003213


Basic Information

Item Value
gene id AMCG00003213
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14631357 ~ 14632106 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003213
ATGTCACCCAAAACAAACTGCTCTCCACCTGGAACACGGGAGTTTTACTTTGGGATGCCCAAAGATGAAGCtacattattaaaatttgaatctCCAAGCTCGTCGTCCACCTCCACCTCCGCGTCCAAGTCCATCCCAGACGACCTGACAGAAAGCTTCCAGTCAGGGGACGACCCAGAGGAGACGGGGGACTCCTTGCTTAGCCCACCCCGGGGAACCCAGGAGAAAAGGCAGAAAACCAAGAGAGGGCGATCCAAAGCAAAACCAGAGGGCTTGGTGACAAAACAGAGGAAGAACCGCAGGGTGAAGGcgaatgacagagagagaaaccgCATGCATAATCTCAACTCCGCCTTGGACGCCTTGAGAAGCGTCCTTCCCACTTTCCCCGATGATGCCAAACTCACCAAAATCGAAACCCTGAGGTTCGCTCATAACTACATCTGGGCCCTAACCGAGACACTGAGGATGGCAGACCAAGGTCGGGTGATCCCAGGCCAGCAGGAGGACAGAGAGGGCTTCTTCCCAATCCCAAGCTCGTGTATGGTGGAGCTAGCCAGCCCGACCAGTGTCTGCTCCTCGGAGTGGGACTCGTCGGCATACTCGCCCTCCTCCCACGACCCCGGGGAGCACAGCCCGGACAGTGCGGTGGAAGAGGCGTTTCCTTGCTATACGAGTCACCTCAGTTGTATCACCAGCATGCACAACAGCCAGACTAAGCACAGCACTTCATTTCCagcatacatttaa

Function

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048884 neuromast development biological_process
GO:0031103 axon regeneration biological_process
GO:0071698 olfactory placode development biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0048918 posterior lateral line nerve development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0007413 axonal fasciculation biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0021772 olfactory bulb development biological_process
GO:0005515 protein binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0070888 E-box binding molecular_function

KEGG:

id description
K08028 NEUROG3; neurogenin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003213 True 750 mRNA 0.55 1 14631357 14632106

Neighbor

gene id symbol gene type direction distance location
AMCG00003204 pprc1,LOC107585240 coding downstream 99725 14516169 ~ 14531632 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding downstream 118552 14499293 ~ 14512805 (-)
AMCG00003205 NA coding downstream 135315 14490784 ~ 14496042 (-)
AMCG00003200 arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841 coding downstream 151421 14472344 ~ 14479936 (-)
AMCG00003201 actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867 coding downstream 219431 14405461 ~ 14411926 (-)
AMCG00003215 NA coding upstream 44601 14676707 ~ 14773565 (-)
AMCG00003220 NA coding upstream 200573 14832679 ~ 14849623 (-)
AMCG00003219 NA coding upstream 223984 14856090 ~ 14878016 (-)
AMCG00003222 inpp5f coding upstream 256076 14888182 ~ 14915336 (-)
AMCG00003223 NA coding upstream 331213 14963319 ~ 14973599 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 184852 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 253044 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 257188 14373967 ~ 14374169 (-)
G141319 NA non-coding downstream 500291 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 567186 14063800 ~ 14064171 (-)
G141520 NA non-coding upstream 27313 14659419 ~ 14659991 (-)
G141569 NA non-coding upstream 521910 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 531848 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 585368 15217474 ~ 15217807 (-)
G141681 NA non-coding upstream 1356829 15988935 ~ 15992678 (-)
AMCG00003164 sec24c other downstream 1201033 13407272 ~ 13430324 (-)
G141004 NA other downstream 1751936 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1776016 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1891550 12728238 ~ 12739807 (-)
G140757 NA other downstream 2897595 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 37309 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 424537 15056643 ~ 15140819 (-)
G141826 NA other upstream 2115955 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 4911531 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5169973 19802079 ~ 19876762 (-)

Expression


Co-expression Network