AMCG00003216 (csgalnact2,LOC106604550,LOC102795995)


Basic Information

Item Value
gene id AMCG00003216
gene name csgalnact2,LOC106604550,LOC102795995
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14808618 ~ 14826815 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003216
CCGCAGCCGACGAGCCGCATCTTGCCCGTTTCCCGGCGCTGCCACTACTTCGCTACATTGTCATCCACGTTGGCTGCAGGGCATCTTCAGACAGCACCCTGTTGTTCATGAGTTTCTCAATCTTTATTTTGCTGACTAAGGCTGTGGGATCACATGGACTGTTTTCTTCATCATGTTGCTGTTGCTAGGTGACTGCTGCAATAAGCGGGAACATTATACTCTTAACCCGGATCCCCAGGAACAGAATTCAGATGAGCCGGTGTTTTACTTCGCCATGACTAACCTTTGAAATTGTGGactgtgggattacatttgcattgttgTGGTAACCTTGTTCACCTGTGAGTTGCACAAGTACTTCCAATTTAATGATCAAATATTGTGTATAGCTTACCATTTTTCTTAGAGGTTTGAATAAGGCATGTGGATAGTATATGTGATTTCCCTTTTACAGCATTGGTGTTTTATACTGTGCAGCGCGGTTTTCCTGGGTTGTGTCAGAAATAATTGTTGATCATGGAGTGGACGACGGGTGCGTACAAAGAACGGCACAAGCTATAGCTACTTTAGTCCTAAAGCACTTGCTCTTTAGTCAGTCCTCACTCTTGTAGATTGAATTCACTGACATTCTTGGTTGCACAAGGGGAAATTAAGTCCTCTTAAAGGTATTTTCCAGCAGATTTGGGCCAGAAATGCCAGGTTTTAGGCTATAAAACGGAGTACTCTTCACTATGCCTAGAAGAAGCCTGACCCTGCAGGGCCGGATTCGCTGGCTGCTCCTAGGGATCCTTCTCTTCCTCAGCCTGGTGCTGTTCACCTATTTCCTCGAATGTACCCCTCCTCCCAACATCAGCTTGGCTCTGTCGGGGCCTGGGGTTGAACCGTATGGCAAAGAGTACTACCAGGCTTTGCTTCAGGAGCAAGAGGAACGTCACCTCAATAGAGCCGCCAGCCTGAAGCGACAAATCGCACAGCTGAAGCAAGAACTCCAGGAGATGAGCGAAAGGCTGAAGTCCCTGCAGGACAAAAAAGGGACGGTGCCCCAAGGCCACATAGGGAACAAGGACCAGGAGCCCAACGACCTCCTGGAGTACCTCCACTCGCAGATCGACAAGGCCGAGGTCAGCACCGGCGCACGGCTGCCCAGCGAGTACGCTCTGGTCCCCTTCGAGAGCTTCACGGCCACCAAGGTCTTCCAGCTGGAGATGGGCTTAACCAGACACCCCGAGGAGAAGCCTGTGCGCAAGGACCGCAGGGACGAACTGGCCGAGGTCATCGAGGCCGGCCTGGAGGTCATCAACAACCCCGACGAGGAAGATGGGCAAGAGGAAGATGGCATTCCCATGCAGAAGCAGGCGTACACCGAGGTCGACTTTGTGGAAGGGCTGTACCGCACAGAGCGAGATAAAGGCACCATGTACGAGCTGTTCTATCGAAAAGAAGACGCCGATGATTTCCGACACGTTACTTTGTTCCGTCCGTTTGGCCCTCTGATGAAAGTGAGGAGTACTTCTGTAGAGGCTGCCAGCAGCATCATTAACATTATTGTGCCGCTGGCGGGGAGAACAGAGGCCTTCGCTCAGTTCCTGCACAATTTCAGGGAAGTGTGCCTGCAGCATGACCGCAGAGTCCATCTCACAGTGGTCTATTTCGGGAAAGAAGGTCTACTGAAAGTAAAAACTATCTTGGAACAAACAGCCAGGGAAGAGAAATTCACAGACTACACCCTGATCCCTGTGGATGAGGAGTTCTCGCGGGGAAGAGGCCTCGATATCGGAGCGCACGCCTGGAAGAAGGGCGACGTACTCATGTTCTTCTGTGACGTCGATATCTATTTCACTTTGGAGTTCCTCAACACCTGCCGCCTTAACACGTATCCAAACAAGAGAGTCTTTTATCCTGTGGTTTTCAGTTTGTACAATCCTGCCATAGTCTATGGAAACCTGGAGCTGTCTCCGCCCGTTGAACAACAACTTGTTCATAAAAAGGACGCGGGATTCTGGAGGGATTTCGGCTTCGGAATGACCTGTCAGTACCGCTCCGACTTTCTGAGCATCGgaGGCTTTGACCTGGAAGTGAAAGGTTGGGGTGTGGAGGATGTCCATCTGTACAGGAAGTACCTACGCAGTGACCTCATTGTGGTGCGCACTCCGGTCTCTGGTCTGTTCCACTTGTGGCACGAGAAGCAGTGTGCGGACGAGCTGACCCCGGAGCAGTACCGCATGTGCATCCAGTCCAAGGCCATGAACGAGGCGTCCCACTCCCACCTGGGCATGCTGGTGTTCCGCGAGGAGATCGAGTCGCACCTCCGTAAGCAAGCCTTCCAAGCCCACAGCAAGCCGGCCAAGTGAAGGGCCAAGCGCACACTCGAGGGCCCGGTGGCCTCGTACAGGCCGGAGGAGGGGCGGCGATGGTCTTCACTCACCAGTCGGCTAAGCTTTAGTGAAGTGAAGCCTTCTGAAATCTGAAACGGACTTCTATTCACTTAGTTGGACTGACATTGGACGCAGTCAGGAGGACTGGGTGGATCAGACTGACTTGGTTTAATTGGTAGGCAGCTGTGGATTATGAAGGATATTGATTATGGGCTGTGAATCCTAGCTGAAAATCTACAGAAAAGCAAtggactttgttttatttatttcattttgttttttgttgttgttgacattGTCTTAGGGTCCATTCGAATGAAGTAAAACATCTAATCATTGGCCTCTAATCACTTCTGATCCTTGAGACGATCCTGGGTGGATGTGGTTTAGAGTTCTGAGGAGAGGCTGTGGTTGAGTTCTTGGAGGAACAGTAGATGACATGTTGTCTATCAATCGAGTACTCCGTCGCACTTTTGTACAAGCAGCGATTATATTGTGACACGAGTGAATTCAGTTGCATGCTACGAAGTCCTAAAGTCCCCCCCACCATAACGGATTCTCAAATATGaattcccacttcctgttcctctGCTGCTATTTAGTGTTCTTCATTGAGCTCGAAGTTTTGACCCACAGGATGCTTCTTTGAGTGTTCATTGATTGGTGTGACAGGGTCAGTGTCAAAAAAGAATAATCCCTCTTGGTCATTAGGTATAATGATGTAAGAAATTATTTCTTTCCATCTAGAATTCAAGTAAATAATTctataaaatgcacatttatagATAATTGACAGTTAATCCTCTGTTAGCTATGTTAGATCAGGCAGTGTTTCCTCTTTTCAGACCCAGTGTATAGAACGAGCTAGTGGAAAATCTCTTTGGAAAGGGTCTGGCATAGAACTTGAATCAGTTCCGTCTAGAAAGTTATGCATGTGGGCTGGTTCTGTTGTGAATTGTTTTGTCTGGTCCCATATGTTTCACATTGGTTTCATGGACTGTTCCATGATTGAGGGACCTTATTTGCACAGATGATTTAAAGGAATTTGTGTTATTATGTGGAAAAAGCCATCCAAGTGGGATTATTCCCTCTTCTAATAACTACTTTAAAGCGAATTATTAAGACCAGGATCAGTCCTGTTTATTCTTGAATGGCagacaagaacaagaaaaaagttGGACAATTATAATAAGTTAAAAGGATGATTTGGTatgtttaaagattttttttttttttaatttatttatgtgcatCTTATTACAGCCTAATATTGTCCTGCAGGGTACCTGTCACCTATATACATATTCATGCCATATATCAATTTTCAAGACAATGCTTTGCCAAAATTATTTATGTCCTGTTTCTTCAGCTGTTAGTTAGCTAAATGTGTGGCTTTATAAAGTAATTGGATTTGTTTCCCCATAATGTTAAATCAAGCCCAAAACTAAACTGGgggtcatttttaatttatgctaataaaactaatgtaTTTTAACTGCGTTCCTTTCTTTAGCATAAACTCAAAATTATCCCCAGCTGAGGTTTGTGGTAGTTTCAATTCATTTGGCAAGGCTATGCAGGAAAAAATTGGTACCAAAAGGCACTTGAAGTGTACTTGCACCTTAGATTTTCCTGCGATATGCTAAATAGTTGACATACTTTCTCAAGTGTGGGCAGTCCTAACCTTTCAATGTTTTAGTCAGAGGCTGTTAACTTACTCGCTGCCTTATGGGGAACCGGATTCTGCTCATTCTGACCACAAGTAAAAGTTTATCccactctttatttttttatcagccACATCACTTCATTCTCTCCATTGATGTTTCGCAGTTCAGTACTGTGTGAAAGCAAATACTAACTAGGATACTTGAATAGTAAATCTGTTGGGTTCCCTTTTGCAGCCCCTCTTTGTATCGCtttataattcaaaatgcaGTATGTTTTTATAGAGGATGTATTTAATACTTCTGattgtataaaatgtgatgCCAGATATGTTGCACTGCTCTCTCTTGGTAGCGGAGTGCTGCTATAGTATTTCAAAGCTATTAATATTGCAACTTTAAAAACCAGAAAGCTCCCTCAGGTACCTGTTCAATCAATTGAATACTTATCAGGACTCCAAAATCTGTTCAAGACTAAGGGCTGAAGCGCTCAAATAAAAGTCATTAAGCAGTCGACATTGTTCTTTTCATGGTGAGGATGATGGCGATGATTTATTATCAAGTTTATAtcacataaattacattttctggagCCAGAATTGTCTCAAATGAACTAAACCAACAAGCTGAGCTCAAAAGAATATCCTCAGTGCTTCCTTTTAGCCAACcttttggtttgcttttcattttaactttcaTTTGTGTTCCATTAGAAACCCCACTTTTGAACATAACATTGACACACAACTGCAGTCACACACATGGGAAACTGACACACACTTTAAATGTTATCGAACCCTTAAATATTCAACAATCTACAGCAAACCAAAGAACATCTACCAACCTAGTTACATATCAACATAATGTAAATTGTATCACAGTTGGCTGATTTTAACCACAAATGTAATCCAATGAAAAGGATTACGGAActcattttctcttttccatcCAGAGAATGTAGCCCTGCATTTCTTAAGCATTTGTGTTTACTGGTggtaaaaaagaaatgcattgaatTATTGCCAATTGCAGGTTAAAcccatttgctgattttaaagGGTATCAGATTCTTCTGATGATTTGAAGTGtaagtaaatatatttcatatatttttaataatttatcaagggactgaaaatgtatataccCTAATGTCTTCCCTCATTGCCTCGTGTCTTTTAATTTGCATGGggttttgaaatgtacacattgGCGATAATAGGCTACTTTGAGATCTACGTCTCTCAGACATTATCACacttaagatgttttttttttttttttttaaccatagAAATACTGTGGTTGAAATTGTGATTCTGAATTCCACCCTACTATACAGACTGATAGCAGGGTGGGGGAATCCCAGTCCTCGAGGGCTGCGTTCCTTAGGTACCTTTCAGTCCGCAAATAATGAAGACCTGGAATAAACAGGTGATTATACTTCATAGACATATAATGACTacagttaagtaattaagtcCTGAGGTCAAACTAAAATTAAACCCCTGCGGCCCTCGAGAACTAGAATTTCCCACCCCTGGCCTCTAGGGTAAAACAAAACCTTAGAGGGGCAATTCTTATACTTCTGGAATTAAAGACTGCATATTGCAAACTGATCTACCAAGCTTTAGTTGCATTTCCTGCATTTACAGCCTCAAACAAATCAAACCTGATTTGTTGCAAAAGAtgattgaattatgtttttttttttttaatttccagctGTTTTGTTGAGTCCAAATGGATCAGGTGCAAGCTGCTATGTAGTTGTTGCTCTGAGACAGAAGGGAAACAGACTAATGTGTTTGGTTTCCTAAGAAACTGACAGCTCTAGAGGACCAGGGTAATGTTCAATAATTAAACTTGTGGAATCTGTGAAGATATGTAAGCTTATTCCTTAATTTACTTCTGCACAACATTGGGCCATTTATATCCAATATTAATTACCtcatggaaagccatcaacccTGAGCTAACAAGCAATGTGGCCTGTGGCATACCGTGATCTTCAGAataatctgaattattattaatttttttaagtatgtgtaTCTGTTTGAAGTAAAGCCCttcacaaatgtgtgtgtattcaaCTGcttagtttatatttatttgtttggtaaTGCAGTGCAAGATATTATTGTACAATATCTTAAACCatcatatacagtgcctatagaaggtctaccccctttcaaaatgttcaccttttgttgcctgaattaaaatgcattaaaata

Function

symbol description
csgalnact2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within chondroitin sulfate proteoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; nervous system; notochord; pronephric duct; and tail bud. Orthologous to human CSGALNACT2 (chondroitin sulfate N-acetylgalactosaminyltransferase 2).

NR:

description
PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 2-like

GO:

id name namespace
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00746 CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003216 True 6285 mRNA 0.43 8 14808618 14826815

Neighbor

gene id symbol gene type direction distance location
AMCG00003217 NA coding upstream 8396 14788125 ~ 14800222 (+)
AMCG00003218 NA coding upstream 43271 14737354 ~ 14765347 (+)
AMCG00003209 NA coding upstream 143055 14657397 ~ 14665563 (+)
AMCG00003212 NA coding upstream 164291 14643609 ~ 14644327 (+)
AMCG00003208 NA coding upstream 209965 14595659 ~ 14598653 (+)
AMCG00003221 NA coding downstream 51933 14878748 ~ 14886460 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding downstream 149884 14976699 ~ 14987925 (+)
AMCG00003226 NA coding downstream 166999 14993814 ~ 14999491 (+)
AMCG00003224 NA coding downstream 175995 15002810 ~ 15008216 (+)
AMCG00003228 NA coding downstream 209136 15035951 ~ 15039764 (+)
G141405 NA non-coding upstream 292108 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 299779 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 363263 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 754936 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 823192 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 359256 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 363168 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 390427 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 426025 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1972144 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 203070 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 508625 14283850 ~ 14299993 (+)
G141331 NA other upstream 623975 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 677343 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1065075 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1637479 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1700374 16527189 ~ 16559206 (+)
G141962 NA other downstream 2849464 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2894429 17721244 ~ 17725381 (+)
G142078 NA other downstream 3761759 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006635 csgalnact2 coding NC_007124.7 CM002897.2 25569831 ~ 25581303 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_11995593_12005292 CGAT2, CSGALNACT2 coding CI01000012 null 11995593 ~ 12005352 (+)