AMCG00003217


Basic Information

Item Value
gene id AMCG00003217
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14788125 ~ 14800222 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003217
ATGGATTACTTTCCACGCTTTGCAGctACATGTGCACTCTACTTCCCtcagaaaaaatactttgagaACATCTATGTGGGGCAGCTGGCAGGGACACCCATTGTTCAGCTCCATGCCATGCCGGACAATGAGTTTGAAAGCGCTCGCTTCTTCTTCTGCACGTTCTCCAGAGAGCTGCCCTACAGCCACTGGTTCCACCTCGATGAGAAGACAGGGCTGCTTTCATTAAATAAGACTCTGGACTGGAGGGACTTTGCTTCACTACCCATTAGCAGGACACCTCGAAAGTCGCTGACCTTAGAGTTTAGTTCCTCCCCAAATCCCTCCAGAGACCAGAAGTGCATCAAGCTGTACCTCCATTTCTCCAACACCACGACCACCCTCTGCAGCCAGCTGAAGCTGGAGGAGCTGTGCTTCCCAGAGGAGGACAGCAGCCCTCACATCGTGGAGAACAGACCACCGGGCGTGTTTCGTCAGCTCCGACGACTCCCGCTGTACCACCACTGTGCCAACCTCACCATCACCTACAACATAGAAGCAGACGCCTCCGCTCCGTTTGTGTTGAACAACATCACAACAGAGGTGGCCGTGACCAAAGCGCTGGACCGTGAGGAGAAGGAGCTTTACGAACTGCTGGTAAAATGCACCGTGCAGACGGACCTGCGTTTCACAGAAGTGACCCGGCCACTGCTGGTCAACAATAAGTATGTGGGAACTATGATGACAAATGACCCCTGGATTACTAAAaccttcaaaattaaaaataatttcaatgaGAAAAGGTTCAGCAACCAGGTGCGAGGGACCGTCCATGAATACAcaCTAATTCTGAATAAAAGTCTGCCAATGGCAGAGAAACGGTCATTCCAGCTGGATTATCTTGTCAATGACACATCGATACATGGCCCAGAAGGAGTAGTGATTCTTCATTTCAACATCACCATCCTGCCTGTCTCTGTCAGCTTCACCAATGTCACCTACCTGTTCACTGTGAACCGCAGATCTGCAAGCTATGCACAGATTGGTTCAGTTTGTGTGGACAACTGCCTGAAATTCAAGGGGATTAACATCACATACAAACTCGTTGCCTCCAATAGAAGCATTCCGGCGTCTGCCCAAGAATGCTTCAATGCAGTTGCTGTCGCTCAGAATCGAGAGGACACTTCAGCAATCCTTTATGTCAATCAAGCCCAGGCCTTGAGGAATCCCGAGTGTCAGGAACTGCAGTACATTGTCATGGCTCAAGGGAAACAAAAGCAGTTGCAGGCAAAGACAGCGCTTACCATCATTTTTTCTGGACCAATTGATAAGCGGCCTCTGGATAAGGACTGCCCTCTCTCTTGTGCCGAAAGTAGACAGCGAGGCGAGTGTGAAGCCTGCAGTGGCAAGGGTGCTCCCAGTGGACGATGTCAATGGAGACAGGGATACGACAAAGGAATATCATCCAACTACTCAACCTGCTCTCCCAACCTCAAGACTTGCCCAGATGGCCACTGCGATATCATTGAGAGCAAAGACAAGGCGATATGTCCTCAAGACTGCACAACCCATATCGTTGGAGGTCATGAGCAAGGGATCATGTCTGGGATCAAATCTGGCTATGGAACCTGTTACTGCTACTCGGAGAAATGCTTCTGTGAGAAGAACGATATCGTCGAGCCCATGTGTGACGATGTCTGCAAGACCGTCATTGCGACCGCGGTCCTGCTCTCCTTCATAGTCTCTGTGCTTCTGTCGTCCTACTTCATCCATCGCTACCACAAGAACTCTCCCAAGCCGCCTATCGCCTCGGCTGAGATGACATTCAGACGCCCAGCCCAGACCTACCCTATCAGCTACTCCGCCAACAACGTGCGCCGGCCCTCCCTGGACTCCATGGAGAACCAAGTGCCAGTGGACACCTTCAAAATACCTGAAGATCCAAAGTGGGAGTTTCCACGAAAGAACTTGGTGTTGGGCAAGACCCTGGGAGAAGGGGAGTTTGGGAAGGTTGTGAAGGCAACAGCTTTCCGTCTAAAAGGCAAGGCAGGCTACACCACAGTAGCAGTCAAGATGCTGAAAgAACACGCTTCTCACAGTGAGCTACGAGACCTGTTGTCTGAGTTCACCTTGCTGAAGCAGGTCAATCATCCCCACGTCATCAAACTGTATGGAGCCTGCAGTCAAGACGGTCCCCTGTATCTGATTGTAGAATATGCTAAGTATGGATCGTTGCGCAACTTCCTGCGGGAGAGTCGGAAGGTCGGGCCCAGTTACATGGGCAGTGATGCCAACCGCAACTCAAGTTACCTGGAGAACCCTGATGAGAGGGCGCTGACCATGGGAGACCTCATCTCCTTCGCCTGGCAAATCTCCCGGGGGATGCAGTACCTGGCAGAGATGAAGctCGTTCATCGCGACTTGGCTGCACGAAACGTTCTGGTAGCTGAAGGTCGTAAAATGAAGATTTCAGATTTTGGACTGTCACGAGATGTTTATGAAGAGGACTCCTATGTGAAGAGGAGCAAGGGTCGAATTCCTGTGAAATGGATGGCAATTGAGTCCTTGTTTGACCacatttacacaacacaaaGTGACGTATGGTCATTTGGTGTTCTGCTGTGGGAAATTGTGACCCTGGGAGGCAATCCCTACCCAGGAATTGCCCCGGAGCGTCTCTTCAACCTCCTCAAAACTGGCTACAGGATGGAGAAACCCGAGAACTGCAGTGAAGAAATGTACAATCTGATGCTTCGCTGCTGGAAACAGGAGTCAGACAAGAGGCCCACCTTCTCAGAGATCAGTAAAGAGCTCGAGAAGATGATGGTGAAGAGCAGAGATTATCTTGACCTGGCCGCCTCCACGCCTGCAGACTCCTTGTTGTACGACGATGGTCTTTCTGAAGAGGACACCCCCCTTGTGGACTGTAATAATGCTCCCCTCCCTCGCACACTTCCCTCAACATGGATTGAGAACAAGCTCTATGGCATGTCATACCCGAACTGGCCAGAGAAGAGCCCCGTACTGCTCACAAGACTTGATGGCACTAACCCTGTCTTTACAAGATATGCAAATGATAGTGTTTATGCAAACTGGATGGTTTCGCCTTCAACGGCAAAATTTATGGACAAGTTTgatagttaa

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0043167 ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05126 RET; proto-oncogene tyrosine-protein kinase Ret

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003217 True 3123 mRNA 0.50 20 14788125 14800222

Neighbor

gene id symbol gene type direction distance location
AMCG00003218 NA coding upstream 22778 14737354 ~ 14765347 (+)
AMCG00003209 NA coding upstream 122562 14657397 ~ 14665563 (+)
AMCG00003212 NA coding upstream 143798 14643609 ~ 14644327 (+)
AMCG00003208 NA coding upstream 189472 14595659 ~ 14598653 (+)
AMCG00003210 NA coding upstream 195560 14571728 ~ 14592565 (+)
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding downstream 8396 14808618 ~ 14826815 (+)
AMCG00003221 NA coding downstream 78526 14878748 ~ 14886460 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding downstream 176477 14976699 ~ 14987925 (+)
AMCG00003226 NA coding downstream 193592 14993814 ~ 14999491 (+)
AMCG00003224 NA coding downstream 202588 15002810 ~ 15008216 (+)
G141405 NA non-coding upstream 271615 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 279286 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 342770 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 734443 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 802699 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 385849 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 389761 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 417020 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 452618 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1998737 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 182577 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 488132 14283850 ~ 14299993 (+)
G141331 NA other upstream 603482 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 656850 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1044582 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1664072 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1726967 16527189 ~ 16559206 (+)
G141962 NA other downstream 2876057 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2921022 17721244 ~ 17725381 (+)
G142078 NA other downstream 3788352 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006636 ret coding NC_007124.7 CM002897.2 25584556 ~ 25632756 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_11981083_11993407 RET coding CI01000012 null 11981083 ~ 11994093 (+)