AMCG00003221


Basic Information

Item Value
gene id AMCG00003221
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14878748 ~ 14886460 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003221
CGAGTGACGTATATTTCCCGCCATTGCGAATGGTGCCCTagagtttttgtgtgtttctgaatcTGCTTCCTATAGTGGAGAAGTGTGTTTAACAACCTACGTATTGTGAAGATTGCCTTATTCAACGCCGgagtttaaaagaaacaaagatgCCCTCTGCCCACGATTGGATTAACAGCCCTCTTAGCGTCGTGCAGGGGATCTTTACTCAGAACAGCCCCAATCCTGAGTGGGAAAAGAAAGTCGTGGAATATTTTaaagagaagttaaaggaaaaCGATGCAAGGAGCTGGGTGCCGTCTTTAAATGATGTCCCCTTGCACTATCTTAAACCTAACAGCCTGGTCAAGTTCAGGTGTATGGTTCAAGACATGTTTGACCCAGAGTTTTACATGGGAGTGTATGAAACGGTGGACCCAACCTCAAAAGCACGGGTTCTGCGATCTGGGAAATACAGGGATGTTGCGGAGTGTGGGCCTCAGCAGGAGGTTGACCTGAACTCCAGCCGCAGTGTGACTTTGGAGAGGCAGACCTTCTACTGTGTGCCTATCCCTGGGGAGTCCCCATGGGCCAAAGAGATATCCTTTTTGATTatttttttgcCCCTTTCCCCTGTTCTGAATATTGTTCTTAACTCTGTGCTGCACACCTATGCCTCAGCCAGTCAGGCCCGTGTCAGCCCTTCCACATCCTACACGCCATGCCGACGCAAGCGCAGCTATGAGGAGGACGAGGATATGGACATGCAGCCCAGCAAACAGAAGGACCAGCTCTCGGGACTGCCAGGGGGTGCAGATTCCCAGGCCAGCGGAGATTCAAAACGTCTGGAGACCGAAGCCCCTTCCATTCAGAAAAATTCAGTGCCCGGCTGCTCTTCCCCCATTGACCTCAACTTCCCACTGCCAGGAGAAAAAGGTCCAGCCTGCCTTGTGAAGGTCTATGAAGAATGGGAGGGCTTCAAGGTCAACGACATGCTGGAGGTGTATGGGATTTTGTCCGCAGACCCAGTGCTCAGCGTATTGAACGAAGAAAGGGACAATGCCGCCTCCGCCTCCCTGCTGGATCCCATGGACTGCACGGAGACCGCAGAGGAGCAGAGGGTCCACAGTCCGCCCGCGTCCCTGGTGCCCCGGCTCCATGTTGTCCTGGCGCACAAACTGGACCACAACAACCCCCTGCTGCCCACGGGTCTGACTACACAGGAACACCAGAGCTTCGTGTCCAGTTTCCTCAGCGAGGTGACCGCAGTGAGGGCGGAGCTACTGGGCTTCTTCACCCACGTGCTCCTGGGAGACAGCCTGGCAGCCGAGTACCTCATCCTGCACCTGATTTCCAACGTGTATGCGAGACGGGATGTCCTGCCGCTGGGTAAATTCGCGCTGAATCTGAGCGGCTGTCCTCGCAACACGGCCTACACCGAGCGCCTGTATCGCATCATTCAGCAGATCGTTCCTTCTTCTTTCCGCCTTGGCATGTCTCTTCACAACATGAACACCCTGCGGTTCGTTCCCCACAAGGACTACACTGCTAACCGGCTGGTGAGTGGCGTGCTGCAGCTGCCCAGGAACAGCAGTCTCTTCCTGGACGAGACGGCGCTGGAGCAGGGACAGCTGGATGCCTCAGGTGTGCAGAACCTCACTGCCCTGGGTAACCTGATCTCTTGGCAAAAGGTTGATTATGACTTTAACTTCCACCAGATGGAATTCCCCTGCAACATTAATGTGCTGATCACGTCAGAGGGCAGATCGCTGCTACCGTCAGACTGCCAGGTCCACCTGCAGCCCCAGCTCGCCCCCCCCAACATGGAGGAGTACCTGAGCGCCCTGCAGGTGGCGCTGATGCCATCGCTGCTCAACAAGTTCCGCCTCTACACCAGCCTGCTCCGGACCGTGGAGTACGGCATCTCCGAGGAGGTGACCAAGGCAGTGGAAGATGACTTCGTCGAAATGCGCAAGAATGACCCTCAGAGCATCTCAGGTGAAGACCTTCACAGGTTGCTTGTGGTTGCAAGACTGCTGTCTCTTAGTGTGGGCCAGACCACGCTTTGCCGGGAGAGGTGGCTAAGGGCAAAACACCTTGAAAGCCTGCGGAAAAACAGGACTGAGCAACAGAAGTGTATGAATGGGAATGAGCCTTAAGAGGCCGCACCAGTGGACACCTGGCCGAGGCTCCACTGACCCAGGGGACGTGGAGTGATCCTGAGCTGGTCTGGGGACGTGAGGATCCGGCCGAGGAACAAGGATTAATTGAACTCTGCAAAGTTTTGTAGAAAATTtataccaaaacattttttttttttttgcatacaagAGAATTGTGGTTGTTCACTGATCTTTAACAAACTGTTGTATGTGTCTTATTAATTCAGTCTGTTAACAAAAAAGACTCAGACTACATgtcttatatataaaacaaattggatactttttgtaatgttaaGATCTACTTGTATCTTtccatatgtttgtttttgtttcccccccttaCAAAGGATTTATTTAGGTGTAttaaagaattacattttgtatagaTGAGGGGTTTCCATAATGGTATGTTTTTAGTTTCAGTTCATTACTGAGCTACGTGAACTCTTTAGAGATTTTGAATTCCACATCTGTTTTGTAATACTATACTCTGCTGCTGTAGGGTGACACACAGGGAAGTAAGGTTGTCTATTTAAAACAAGCAGGGGGCTTCTTAATGGTTTCCCTTCTCAATAAGGgctttataaacatttaaaatggagtGTTTTTAGCAGAcgttttaaaatttaaaatgtacaaaaatgtgtatgatTCTTATAAATCTTTACTGTAGTTTGAATTGAAAGAAACTGAGCAATATTTCTTGCATCATCTCCACGTGCGATTTGTACTTGGCAACTGTGCAAGTAACGCCCTAGCTGAGGTCATAGTCTAATTTGGTTACAGATGTTTTTGTATGGATCAGAGGAAACAACtttatattacaaatttaaatcgGCAACTTTGGCATAgtttgtattacatattttggcATTAGCCATACACCACCTCTGCAAATGAGTGCCTTTACTCTTCAGCTAGTCTTGTCTAAATTAACTGGAGTATCTGCTGGACTTAATCTGTGTATAGTGTTAAGCCCCATGCgatttataaacaaattaagcTGAACGTATTGCTCATCACAAAATACCACCACTGCAACTTGTCTTTATAAAATACCTAAAGTGCATTCTCCAAGAATATGTCTGCATTAATGAAGTGCCTATTCTGCTTTTGTCACGTTACATTTTCCctgaaatttacatttacattgtttgGATTTGCTGATCTGTGGTGCCTTCCCACAAACCCTTGCAAACTTAAATCTACAGCAgtcttttaatatattaactTCCTAAGTATTCCAGTTTTGGGGTGAAGTTGCTGAACTATACTAGCTATACATCGCCTTGACATCTACCCAAAGATAACTGCCTTACCATGTAATGAAAATCAATGCTAAACTAAGCACTGAATGTACAGACTTCTTTAGCCTTCAATGCTAGATGGAGAGGAAAACCAGAGGAGTCAcaagttttaattaaagaaaaaactttgtatttttttgtatacatttgttttcctgatgtATAAGTCTCCTACCCACTTGATCAAAGCAATAAAGCCTTTCAACTCTCTA

Function

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003221 True 3663 mRNA 0.47 16 14878748 14886460

Neighbor

gene id symbol gene type direction distance location
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding upstream 51933 14808618 ~ 14826815 (+)
AMCG00003217 NA coding upstream 78526 14788125 ~ 14800222 (+)
AMCG00003218 NA coding upstream 113401 14737354 ~ 14765347 (+)
AMCG00003209 NA coding upstream 213185 14657397 ~ 14665563 (+)
AMCG00003212 NA coding upstream 234421 14643609 ~ 14644327 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding downstream 90239 14976699 ~ 14987925 (+)
AMCG00003226 NA coding downstream 107354 14993814 ~ 14999491 (+)
AMCG00003224 NA coding downstream 116350 15002810 ~ 15008216 (+)
AMCG00003228 NA coding downstream 149491 15035951 ~ 15039764 (+)
AMCG00003230 NA coding downstream 165882 15052342 ~ 15056226 (+)
G141405 NA non-coding upstream 362238 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 369909 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 433393 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 825066 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 893322 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 299611 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 303523 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 330782 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 366380 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1912499 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 273200 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 578755 14283850 ~ 14299993 (+)
G141331 NA other upstream 694105 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 747473 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1135205 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1577834 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1640729 16527189 ~ 16559206 (+)
G141962 NA other downstream 2789819 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2834784 17721244 ~ 17725381 (+)
G142078 NA other downstream 3702114 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G67930 mcmbp unknown NC_048565.1 CM023219.2 61729765 ~ 61733388 (+)
bowfin (Amia calva) G60102 NA non-coding CM030127.1 CM030127.1 5166359 ~ 5167290 (-)