AMCG00003224


Basic Information

Item Value
gene id AMCG00003224
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15002810 ~ 15008216 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003224
tttttttttctgttgataTCTGCATATGATATCTCTTTAGCCTTTTAACTAGTTTGCTTACAACCAAGAGCCCTGCACAGCAAAATCTGTGATTCTCCTCTCAGAACTCGGTTAAGTCATTCAAAACGGCCAAACGCTTTGTGATGACATGTTGGGTTCAGTTGGTCTCGCTGCCTGTGTTTGtagttgatttgttttccacttttGGATTGGAGAGGTGGTTGAATGAGGGTGCACTGATATAGACGGGTTCACCTCTTGGAAAATGACGATTTTATCCTGGTTGCCAGCTATAACGTTATTGAGtcgattttgtttatttttttattataataattgtgaaTACAAAGCTTTTCGGACTTTTTTTGGCGTTTCTACTTCACAGACATGAGGATGCTGGTGAGATGCTGAAAACCATGGAGGAATTCAGCATTTCCCATATGTTTCACAACAAGTCTTCTGTGTGGTATTACCAAACTATATCAGACAATACATGCAGGAATATGACtgtgtaacaaaacaaacaaacagactggttaaaaagcagcattttaagacacaaacagaaatgtgaagGAAGGCCTTATGCCCTATTGGGAAGTCACATGTGATCAGTGTCCCTAGGGCTTTGCAGTTTTGTATAATGGATATTTGTGATCCAAATCCTAGTCATTTGCATTAAATTATccactaaaaatatatatatttttgtggtaAATAAATGACATCTGTAGCTACATTGTAAACCAGCAGAGGGCACTCGTGTCTCTCCTGTCTCAATCCAGAAACCAACCAGGGTTTAGCTTGCCTGTGTTACTCGAGTGCAGTTGATAGAAATGAAACCTTAACTTGGACTCTATTCTATTTTGTCAGGCTGCGCTCATCTTGCTAATGCTCTTACCAGATCCCACCAGCTGttgcaaaatgaataaatgtcttCTTCCCTCACATGGAACAGTACCCCTTCGGCTGTGAGACACAATATCCCACTCGCACCTCAGTTACCCCACAGATCTTCACTGCTCAGCGGGACAGAATATTTGCCCCCTGAATAAGACCAGCTTCATTTTGGCCTGACCAAAAAAATCTGTGCTGTTAAATCAAGAACTGCTTCATTATATGGTGCCATAAAAGTATCTCTGGCTGTATTTGGTACAAATGATATTGCAGGTTGCTTGCTCGGATATTGTCATGCAATTATAGTAGGTGGTGACACAGCAACGGATACGTCAAGGGCTATTGTTAGGAGTTCTAATGTAAGGGGAGGGAAAGCAGTATGAATCACATTTTCACCTCTATCTATAATCTTATATAGTATATGTATTATTCTGTGTGTTTACTTGACTTTGAAAAAACATCATTATGAAGCTGTGTGGGATACTTCATAACTGTAAGAGGATGCTCTGGATTTTCATAGACAGTTTTGAGAAAAAACGTACATACCTTGCTTGCATGATACAAAGGCCTCGAACGTGGAAGTGTTTGTGCTCTTGGCTCATGACATCTATCCCACTGTGTTTGGCCGACTGTAGACTAGAGAAATAAACAGCGAGGCTCAATGCCAGAGCAATGCTGTAAAGGCGATGAAGGAACACTAGAGGTAACTTTAACCAAGGCAGACGCAAGGGAGCCATTGGTCAGAGTCCTTGACGGAGTAGATGGTCAAAGCAGTTTCAGAGTTTTTAGGCTGATTGGTATAGAAAGTGTTGACCCTGGCCTTGTGGGGATCAAGCAGAGTATCCTGGGACATCCTGTTCTCCATTTATAGCACATGAACCTGCTGTTTTCACTGCTGCGATATAGGAATCCATGTCATTTTAATACGTATCATAgatctgtttgttgttttctggaattgaattatttatgacCAATATGACTTTGCTCTGTACGATGCCAATAAGATTGCAGTGTAACATTCTgtaaatctgtttgtttttatgctgttgttttgttcctgtttaTTAAGGGGTATGAGTAAATCTGGAGGGCGttgtatacattattcattatagGAATGCCAGCTGACCTTGTCTCCACccagtaatgttttaaaattcatttcaaTGGTCTGATATGCTTTCAACTTCCATCACAGATCTTTTAATCTAAACTGGGGCTTGGCGCTCTCTCTCAGCAGCAGCTGTTGTTTTGAGGGAGAGTAATCCTCTTGATAGCTACTAGCACTTGGTGCCTTACAGGTTATTCGGTTATTATGCCAAATCCACTAACTAGGAAGATCTGTctagctgttgtttttgtgtgttgacTTATTCATGTGTACAGTGTGAAGCTTAAATACTCTGACTAACGTGGATTCCCACTGACAGAGCTTCCAGTCACTGAACACAGGTGCCTGTGGCAATTACATGCCATGATACGCATAACTGGGGACGGCGTCACGACCTGGGTTTGATACGGAGTGGCTCATGCAAATGAAAGACTTTGACATGAGTAAATCCAAGAAGCAGGCAGAGCTCTGTTAATCGCTCTTTAATCCGAACTCTGTGCACTTTTCCGGAGCTTCCAGCAAGTAGTAGTAGGAAACTCTGTGAGAAAGAAGTCAGGCACGTAGCACTCACAGAAAGCAACTTCAAGGAGCTGACTAGGAAGGCAGATCATGCAAGAAATTGCAGCAGGACAATCAATAGTCAGTTTAGTGTAAAATGATTtggatttgttcattttgtaaGCAGAGCAATAAAATctctatattaataattggtaaaaaggtgatttttgttttgttttataaaagaaCACATCATTGAAAATAGGAGGGAAGACTGATTTTATAAGAGATCTCCTGCAATACAAAATGCCTCACTATAGTAACCCACGGAGGTATGGGGCGCGGAGGAGGTCAAACAGCACTGGCGTCTGCATCCTGCCGAGCATCCCGGAATACCCAGGCTTCCAGGACATCAAGGTTTCAAGGAGTCTACCTTTGAGCCCCAACTCCAGCCCCGTCTTACTGGAACCACCGCCAAAGAGGAGCCCTTCGCCACCCACCCATTTCCAGAGCAATGTGGTTGTGAAGTCCTTGATTTACAAGAGCCTGAAGTGCCAGGAGGTTGTGAGCACGCAGAACCACAAACTCCCTCAGCAGGACCTGGGCAACTGGCCAGGTGGCTTCCACGAACAGAACCTGGAGGACTACTTCAATGCCAGACTGACGGAGCTGAGGAACCCGGACATGCACAAGAGGCCGAGCGGCAGGACGGGCCTGCCCCGGTACGGCCACAGCAGGCAGGTCAGACGTCGCAACAGCTGTACGGCTCTCCTCGTGGGCACCGCCACGAAAGACTACGAGCACCTGGAGAGTCGGACGCAGGCAGAGTGTGACAGCAAGGTCAAGCCGTTGAGCGTCTTTGATTTTTACAAGCGCTGCAAGATCGATTGTTGGAACAAAATCAATAGCTGGCGTGTCTTCAAGTCTTAATCCGACACACGTCTGGTTAACCGCTATCTGATCTGTCAGGTCTAACAATGCGAGAACAATCCTTTGGTATGGACCTGCTATCCCTCAAAGATGAAGGACGTTGCATCACACACTATTCTTTGaacacagcttttcttttttacttcaACTGCAAGTAAGGTTTCCTTTAGTTATGCAGTTATCtaattcttttgtttttgttttttccatgtatgaaaatgcattcatacacacatcaacattttcttttttacacaGAAGGAGTATGAAAGGAGCATCAATAATATACACCTTAACAAAAAAAGTATACGTTTCCAACAAAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003224 True 3765 mRNA 0.42 2 15002810 15008216

Neighbor

gene id symbol gene type direction distance location
AMCG00003226 NA coding upstream 3319 14993814 ~ 14999491 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding upstream 14885 14976699 ~ 14987925 (+)
AMCG00003221 NA coding upstream 116350 14878748 ~ 14886460 (+)
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding upstream 175995 14808618 ~ 14826815 (+)
AMCG00003217 NA coding upstream 202588 14788125 ~ 14800222 (+)
AMCG00003228 NA coding downstream 27735 15035951 ~ 15039764 (+)
AMCG00003230 NA coding downstream 44126 15052342 ~ 15056226 (+)
AMCG00003229 NA coding downstream 126996 15135212 ~ 15146285 (+)
AMCG00003242 NA coding downstream 148917 15157133 ~ 15161538 (+)
AMCG00003234 NA coding downstream 155508 15163724 ~ 15167974 (+)
G141405 NA non-coding upstream 486300 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 493971 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 557455 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 949128 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1017384 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 177855 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 181767 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 209026 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 244624 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1790743 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 397262 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 702817 14283850 ~ 14299993 (+)
G141331 NA other upstream 818167 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 871535 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1259267 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1456078 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1518973 16527189 ~ 16559206 (+)
G141962 NA other downstream 2668063 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2713028 17721244 ~ 17725381 (+)
G142078 NA other downstream 3580358 18588574 ~ 18692204 (+)

Expression


Co-expression Network