AMCG00003227


Basic Information

Item Value
gene id AMCG00003227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15010021 ~ 15030801 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003227
gagagagagagagagagggagaaaaaaaaacaagagcttTCTTaatgaaagggagaaaaaaaaagccacgAGCAAATCGGAAATCGGAGAGACCGTTGGATGAGAGCAACGCGGTTGTAGTTTCtccttgcatttttttctttccccaggAAAACCTCTGAAAATACATACCGTCTCCCTCTGCAAAACCTgcctggcttttttttttaaaggttgtcAATGGAGCTGGAGAATATTGTAGCCAATACAGTCTTGTTGAAAGCCAGAGAAGGTGGAGGAGGGAAACGAAAGGGAAAAAGCAAAAAGTGGAAAGAAATTCTGAAGTTTCCACATATAAGTGAGTGTGAAGAGCAACGAAAAAATATAGACAGAGAGTACTACAGCTTGTGTTACAGACAGCCAATTGGCCGGCTGTTGTTCCGCCAGTTCTGCGAAACCCGACCTGAATTTGAGCGCTGCATTACATTTCTAGACTCTGTGGTAGAGTATGAAGTTACTCCAGATGAAAGGCTTggtgaaaatggaaaagaaatcGTCAGTAAATACCTCAGTCCAGAGTCTTCAGATTTTATACCAGAAATAAGCTTAGACCTCAttcaagaaacaaaagaaaaactcgAGCTCAGCCCCTGCAAAGAACTTTTCTCTCACTGTGTGaaATCTGTCCAAGACTACCTGAGTGGAGAACCATTCCAGGAGTACCAGGAGAGCATGTATTTTGATAGGTTTTTACAGTGGAAATGGTTAGAAAGgCTACCAGTAACAAAGAACACATTTAGACAGTACAGAGTACTAGGAAAAGGTGGATTTGGTGAGGTTTGTGCTTGCCAGGTCCGAGCGACTGGGAAAATGTACGCTTGCAAAAGACTAGAGAAAAAGAGGataaagaagagaaaaggagaagcaatggctttaaatgaaaaacagattttagaAAAAGTCAACAGTAGATTTGTAGTTAATTTAGCTTATGCATATGAAACCAAGGATGCGCTGTGCTTAGTCCTGACGATAATGAATGGAGGTGACCTGAAGTTTCACATCTATAATATGGGCAATCCAGGGTTTGAAGAAGACCGGGCCTTGTTTTATGCAGCAGAGATACTTTGTGGTTTAGAGGATCTTCACAGAGAATTTATTGTTTACAGGGACTTGAAACCAGAAAACATCTTGTTAGATGACTATGGCCACATCAGGATCTCAGACCTGGGACTCGCTGTGAAGATCCCTGAAGGAGAGTCTATCCGAGGGCGGGTCGGCACGGTTGGTTATATGGCCCCAGAGGTACTGAATAATCAACGCTACGCCCTGAGTCCTGACTACTGGGGCCTTGGCTGCCTGGTGTATGAGATGATTGCAGGCCAGTCGCCGTTCCGCGGCCGCAAGGAGAAGGTGAAGAGAGAGGAGGTGGACAAGAGGGTGCTGGAAATAGAAGAGGTCTACTCCGATAAATTCTCAGATGAGGCCCAGTCAATTTGTAAATTGTTATTAACCAAAGACCCAAAAGAGAGATTGGGATGCAGGGGAGAGGGGGCTGCAGAAGTGAAGCGACACCCATTCTTCAAATCAATTAACTTCAAACGGTTAGAAGCAGGAATATTGGAGCCACCCTTTGTGCCTGATcCTCGTGCCGTGTACTGTAAGGATGTCCTGGACATTGAACAATTTTCCACTGTGAAAGGAGTTAATTTGGACCAAACCGACGATGACTTCTATTCCAAGTTTGCGACTGGTTGCGTTTCGATCCCATGGCAGAACGAGATGATTGAAACGGAGTGTTTTAATGAGCTGAACACGTTTGGGACCAACGGGGCGCTGCCCACAGACCTGGACAGGAGCTACATCCCAGAGCCGCCCAAGAAAGGCATACTTCACCGATTCTTTCGACGACAGCACCATCAAAACAATTCCAACAGTCCTTCAAACTCCAAGGCCAATTCCAACCACCACGTGAACTCCAATCATGTGACCTCGAACTCCACTGGCAGCAGCTAGTCAGAAGCCGTCCGACTGGCCCTTGAGTAGCTCCCCTGATTGTATCCTTCATCCGTTGTAAGAGTCGAAAAAGCAAAATGGGaaatcctggaaaaaaaaacacttaatagtAAAATAAGAGACAGTAAATCCCGGTGTCCACTCCATGCACAAAATGGAGATAGTCATTCATTCCACAGTGACAGTCGGAGCCTCTTTTTGGACGGAGAAGTTCCACTTCCACTCAGGTTTAAACCACAGTTGGTGCGCGCAAGAtcaacttaaaagaaaaaagaaaaaattctTAGAACACTGCAatagcaacaaaacaaaaaaaatacaaaataaaataaatttaaatctCATGAACAAGACTACTTGCACGTATACAAGAAACCTAGCATTGGACTACAACTAAATTTGGTCTTTGttagtaatatttaattattattgttattattaattactgttattataagGGAAagacattttgtacatttaactCTTATTGtctcagtttacattttttgtacatttgtatttgaatgaaaGTTTGAATTTGGGATGAATTTTTGTCCGTGCAGTGGCCGACTCAAAGCCGAGTGTTGTCTGACTGGCATCCATTGGAATTATTTGTATGAAACGCGATTTAGAACTTTaacaattgattttattttttatatttatgtatacataggctgtatatatatatatgtatatggttttaattcattttctgtattgtttctgttttggggCCTTTCACAGCCTGATTTTGCCATATCAGTTTgcctttttgttatttaattattttatgcacCATTGCAAAAGTGCAATTTTAATGTTGAAACtggttttgtgttatttattaaagtGTGCCCTGTCATAGTGAAGACTCCACTATATTGCTGACTTGGATAGCTATTGCAGGTGAAGATAAACTAGGACGTTGTCTGTAAGGATGTTGTCATGTATCCTAGAAATACCACAAGCAGTGCGATTcactttgaataaaataaaataatcccccccttcccttttcattaaaaacaaaacaaaaaatccataaaaaaacatttttttttctacaaggTTTTGAAAAGTAATAACCATTGGCtatttgaaatatgtgtataatagTTGCCTGTGTTAGTCTGTTGAATTGGTCCTTTCACGGACATCTAAAAACTAATGTAAGAACTGTATGTGTcccacaaaaacaataaagcagaagCCAGAGAACATTCTAATAGCCAAATAGTACAGAATCTTGGGAGAGCTGTTTTTCTCATCTTTTCTAGTTTTCGTTGAGTTTTTG

Function

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K08291 GRK4_5_6; G protein-coupled receptor kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003227 True 3292 mRNA 0.40 16 15010021 15030801

Neighbor

gene id symbol gene type direction distance location
AMCG00003223 NA coding downstream 36422 14963319 ~ 14973599 (-)
AMCG00003222 inpp5f coding downstream 94685 14888182 ~ 14915336 (-)
AMCG00003219 NA coding downstream 132005 14856090 ~ 14878016 (-)
AMCG00003220 NA coding downstream 160398 14832679 ~ 14849623 (-)
AMCG00003215 NA coding downstream 236456 14676707 ~ 14773565 (-)
AMCG00003232 NA coding upstream 118468 15149269 ~ 15163406 (-)
AMCG00003240 timm23a,timm23,LOC108426535,LOC107690962,LOC107684090 coding upstream 187026 15217827 ~ 15227554 (-)
AMCG00003241 NA coding upstream 197734 15228535 ~ 15234790 (-)
AMCG00003239 NA coding upstream 222068 15252869 ~ 15259374 (-)
AMCG00003244 NA coding upstream 273999 15304800 ~ 15315470 (-)
G141517 NA non-coding downstream 340937 14630412 ~ 14669084 (-)
G141520 NA non-coding downstream 350030 14659419 ~ 14659991 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 563516 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 631708 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 635852 14373967 ~ 14374169 (-)
G141569 NA non-coding upstream 123215 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 133153 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 186673 15217474 ~ 15217807 (-)
G141681 NA non-coding upstream 958134 15988935 ~ 15992678 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding upstream 977262 16008063 ~ 16061038 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 335601 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 1579697 13407272 ~ 13430324 (-)
G141004 NA other downstream 2130600 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 2154680 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 2270214 12728238 ~ 12739807 (-)
AMCG00003231 NA other upstream 25842 15056643 ~ 15140819 (-)
G141826 NA other upstream 1717260 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 4512836 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 4771278 19802079 ~ 19876762 (-)

Expression


Co-expression Network