AMCG00003228


Basic Information

Item Value
gene id AMCG00003228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15035951 ~ 15039764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003228
ATGTGCAAGgcGTTACTTCAGGAAGAAGATGTGAACTGCATCTGTGTGGACTGGCTAGGTGGTTCTAGATGTCCCTACACTCAGGCTGCTAACAATATCCGTGTTGTTGGAGCAGAGATTGCATATTTTGCAGAAGTTCTGCAGACCAACTATAATTATCACCCATCCAATATTCATCTCATTGGTCATAGTTTGGGGGCTCATGCCTCCGGGGAGGCTGGGAAGAGAAAACATGGCATCTCAAGAATTACAGGCCTGGATCCGGCGGAACCCTATTTTCAGAACACCCCCATTGAGGTTAGACTTGACCCCAGCGATGCCGTGTTTGTTGATGTCATCCACACTGATGCTGCCCCGATGGTCCCATACCTTGGAACCCGTAACTTTGTTGCCTGCAATCATGCAAGAGCTTACAAATACTATATTGATAGTATCAAGGAGAGAGACGGGTTAATTGGATATCAATGCTCCAATTATGAAGATTTTAAGAAGGGCAACTGTGCACAGTGTATGAATGGGGGATGTCCACTAATGGGACACTACGCCGATACCTATGAGCTTCCCAATGGTGCTGTAAACCAACTTCTATATCTCAACACTGGGGATGCAGTACCATACTCACGATGGAGGTACATAGTATCTGTAAAAGTAGCTGGAAATCAGGATGTGAGGGGGTTAATAAACATTTCTCTCTTCgcaaatgaacaaaacacaagacaacaTGAAATCACCAAgtcaTTGAGCGCAACTCTCATTGGTTTTCATGACAGAGGGAAACTGGAACCAACCAAAATGTACATCTCTGGATTTGACTCAGAAGTGAATTTGGGTGACCTGACTGAAGTGAAATTCCTCTGGGATAACAGTGAAATTAACCCTCTGCTGCCGACACTGGGAGCTGAAACCGTGACAGTTCAGAGAGCACAGGACGGAAAATTATTCCGTTTCTGTGGAAGTGGAACCGTTCAAGAGAAAGTTCTGCAGACACTGACACTGTgctaa

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003228 True 1002 mRNA 0.45 9 15035951 15039764

Neighbor

gene id symbol gene type direction distance location
AMCG00003224 NA coding upstream 27735 15002810 ~ 15008216 (+)
AMCG00003226 NA coding upstream 36460 14993814 ~ 14999491 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding upstream 48026 14976699 ~ 14987925 (+)
AMCG00003221 NA coding upstream 149491 14878748 ~ 14886460 (+)
AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding upstream 209136 14808618 ~ 14826815 (+)
AMCG00003230 NA coding downstream 12578 15052342 ~ 15056226 (+)
AMCG00003229 NA coding downstream 95448 15135212 ~ 15146285 (+)
AMCG00003242 NA coding downstream 117369 15157133 ~ 15161538 (+)
AMCG00003234 NA coding downstream 123960 15163724 ~ 15167974 (+)
AMCG00003238 LOC107736286 coding downstream 134366 15174130 ~ 15178215 (+)
G141405 NA non-coding upstream 519441 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 527112 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 590596 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 982269 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1050525 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 146307 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 150219 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 177478 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 213076 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1759195 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 430403 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 735958 14283850 ~ 14299993 (+)
G141331 NA other upstream 851308 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 904676 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1292408 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1424530 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1487425 16527189 ~ 16559206 (+)
G141962 NA other downstream 2636515 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2681480 17721244 ~ 17725381 (+)
G142078 NA other downstream 3548810 18588574 ~ 18692204 (+)

Expression


Co-expression Network