AMCG00003229


Basic Information

Item Value
gene id AMCG00003229
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15135212 ~ 15146285 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003229
ATGGaTTCTCTGAGCACCACCCTGGAGGCAATGAAGGTGAGCGGTGAGGAAGTGGGGGAGTTGAAGCCTCACCTGGATACCCTACTGACCCTGCTACAGGACAAAAAGGAGGGCGTGGCCCAGCAGATTGTGGCCAGTGGCGTTCTTCCCACCCTGGCAGAGGCGCTGAGCAAGGACACCCCCCTCACAGCGCAGTTGGCCCTGGTGATCGCAGAGCTGGCCAGAGAGGcGGCGGTGAGGGAGCCCTGTATCGAGGCTGGCCTGGTCTCGGCCCTGGTTCCCCTGCTGGAGAGTTCGGATCAGGACCTGCTTCTGCACACCGGCCGTGCCCAGCAAGACCAGCTGGTGCAAAGAGGAGTGATCCCTCGCCTGGTGGGGATCATGCAGCAGTACCCTGAGAACGATCTCCTGGTCAACGTGTGCTTGCTGGCTCTTTGCAACCTCGCTGACATGGACTCCGCGCGTGAGGCACTGGCAGACGTGGGAGTGGCGGACGTCTTGACTGCACAACTGCGCCGAGCCCCCAGTGCAGAGCGCAGACACATCATACTGGAGGTGCTGGGAACACTTGGGGAGAGCGACGAGTCCATGCAGAAGTGTTTTGGGGACGGGATGGGGATGGTGTATCAGGATGTCCTGTTGTGGCTGCAGTCCACCAACACCCAGCTGCAGCTGTCCGGGGCGCTGGCCATCGCCAACTTCGCCCGGAACGATGGGAACTGTGTGCGGATGGTGGAACTGGGTGTGGTCCCTCGTATCCTGGATCTGCTGGAGAACCATGTGGATGAGGGGGACGTGTCTGTCCAACACGCTGGATTGAGCGCGCTTAGGAACCTCGCCATTCCAGCGGCCAACAAGGTGCGGATGCTGAAGGACGGGGTGTCGGAACGAATCAGGACCTTGCTGCGCTCAGAGATGCCCCCGGTGCAGTTCAAGTTGCTGGGCACCCTGCGCATGATGGTGGACGGCCAAGAGGAGGCGGCGGCGGTGCTGGGCGGAGACGAGACCCTGCTGTCGCGGGTGATGGAGTGGTGCGAGGCGCGGGATCATGCGGGGGTCCGAGGGGAGGCCAACAGGCTGCTGGCAGCCCTGATCAGACACAGCCGGGCACCGGAAGTGATCCATGCCGTGACTGTAGCGGGGGGGGTGCGGCACCTCATCACCATGGCGACGAGCGAGCACGTCATCATGCAGAACGAAGCTCTGGTTGCCCTAGCGATCGCCTCAGCCATTGACATCGACTCCGTGGAGGGGGTCTTCCAGGAGGTGGAGCTGGTGCCCACACTGCAGAAGATGCTGGACGACCCAGTGGGAGCAGTGGAGGTGAAGTTCAGTACGGTGGGCCTGATCTGCAGCCTCGCCAATTCCGCCTCTCTAAGAGAGGAGATGGAATCGCTGAACCTGAGGGAGAGCCTGACCAAACTGTCTGGCCACACCAATACCAAGCTTGCCTCGCAGGCTGACACCGCACTGGCCGTCTTGAAAGAGACCAACTAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003229 True 1497 mRNA 0.62 13 15135212 15146285

Neighbor

gene id symbol gene type direction distance location
AMCG00003230 NA coding upstream 78986 15052342 ~ 15056226 (+)
AMCG00003228 NA coding upstream 95448 15035951 ~ 15039764 (+)
AMCG00003224 NA coding upstream 126996 15002810 ~ 15008216 (+)
AMCG00003226 NA coding upstream 135721 14993814 ~ 14999491 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding upstream 147287 14976699 ~ 14987925 (+)
AMCG00003242 NA coding downstream 10848 15157133 ~ 15161538 (+)
AMCG00003234 NA coding downstream 17439 15163724 ~ 15167974 (+)
AMCG00003238 LOC107736286 coding downstream 27845 15174130 ~ 15178215 (+)
AMCG00003233 NA coding downstream 58342 15204627 ~ 15216414 (+)
AMCG00003236 NA coding downstream 94216 15240501 ~ 15250404 (+)
G141405 NA non-coding upstream 618702 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 626373 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 689857 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 1081530 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1149786 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 39786 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 43698 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 70957 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 106555 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1652674 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 529664 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 835219 14283850 ~ 14299993 (+)
G141331 NA other upstream 950569 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1003937 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1391669 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1318009 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1380904 16527189 ~ 16559206 (+)
G141962 NA other downstream 2529994 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2574959 17721244 ~ 17725381 (+)
G142078 NA other downstream 3442289 18588574 ~ 18692204 (+)

Expression


Co-expression Network