AMCG00003230


Basic Information

Item Value
gene id AMCG00003230
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15052342 ~ 15056226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003230
GGTGCCGGCACACACCCTGCAGTGTTCGAGATCATTCCGTCTACAGCGAGGATCTAGGCTCTCTGTCGGTGGGAACTTTAGATTTTTCACCGAATTATTCCTAGGCATCGGAGATCCGCTCGCTTGTTTCAGGGATGGTCATGTCTACCGTCGCATTGGCCCTCTGTAGGCGCGGCAGGGTGGTGGCGAGTCGGGCAGTGAAGATCGGCGCGTCGCGGTGGCGGTCCTGCCCGCCCTCAGCCCGCTGCATATCGGCCACTAGCGGGAGGAAGAACCTGGCCGCTGCGCTGGAGAGGCGTGTGCAGCAGCCGGCCGCTTGGGACACTTTTGGCACTTGGCTAGACGAGCCTCTTGTGCTGCCGCCTTGGCTGGGGGATGCCGGGCCCACTTTAAAACAACCCAGAGTCCCCAATGTTGGCTGTGCCAGCCAGACTGGGAAGAGGCAGGGCAACGAGGACCGCTTCAGCGTGGCACAGCTGGCGGACAACCTGTTTCTCTTCGCGGTCTTCGACGGCCACGGCGGCCATGCCGCGGCCGAGTTCAGTGCCAGGAATCTGGGGCATTTTATTCAGAGAAATCTGATGCTGCAGTCAGACCTAGAGTCAGTCCTGGAGACGTCCTTTTTGCAAATCGACAGTGCTTTTCTTCAGAGCATTTGCAGTTCAGGAGAAGATGCACTGCTGTCATCAGGAACAACAGCCACGGTGGCCCTGCTGAGAAATGATACTGAGCTTGTGATTGCAAGTGTTGGAGATAGCCCAGCTGTGCTTTGTCGTGAAGGAAAAGCAGAAAGCTTAACTGAAGACCACAGCCCTAGGCGAAAAGATGAACGGAAAAGgaTTCAACAATGTGGGGGATTCATTGAGTGGAATAGTGCTGGGGAGCCATATGTCAATGGGAGGCTAGCCATGACACGCAGCATTGGCGATTTCCAGGTGAAGTCCTATGGTGTGACTGCACAGCCCGAGATCACTACTGTTAAGTTGCAGCAGACGAAGGACTGCTTCCTGGTTTTAACAACCGATGGGGTCAGTGGGATTATGGAAGGACAAGAAATGTGTGACATGGTGAAAAAGTGCCAAGACCCAAAAGAAGCTGCGCTCATTGTAACTGATCAGGCACTGCAATATGGAACGCAAGACAATGTTACCACTATGGTGATCCCTCTTGGTGCTTGGGGAAAGTTCAAGAATTCCTTGACCTCTTCAAACTTTGGACGAATCATGGTAGCCAGTGGTCGTTGGAGTTAACTTGCCAATATTGGTCAAGCCTTATGTTGTCAGATATGAGTGTAGAATATTGTGAAGTGCATGAATTTTCCTAAATGTCCAATGTGTTGAACTACTAGAAATGTGAGTGGTACTATGCTGATCCatctttattctgaaatgtGGATAACAAAGCATTTTCCTCTGGACCTAAAAGgttcttttgtatttctttcatttcttaagAAAGTTACCAGTTTAGTGCCTTGAGGCACTCCAGAATTAAGTTGccaaactatttttaataattttatctTGACCTGAACTGAATGCACACGCGTATCCTTCTGTAAAAATGTGAACCTTCCAAGTCTGGCAATCGGGAAGGAAAAAGCATCTATGAAGTCGGAAGACTTTGTGCACAAAGCAGCTAATAAAAATTGCCCCTTCAATGTATGTTGTCTAGAATAAAAGCCTTAAATACA

Function

GO: NA

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003230 True 1693 mRNA 0.49 7 15052342 15056226

Neighbor

gene id symbol gene type direction distance location
AMCG00003228 NA coding upstream 12578 15035951 ~ 15039764 (+)
AMCG00003224 NA coding upstream 44126 15002810 ~ 15008216 (+)
AMCG00003226 NA coding upstream 52851 14993814 ~ 14999491 (+)
AMCG00003225 tial1,LOC106576826,LOC107559311 coding upstream 64417 14976699 ~ 14987925 (+)
AMCG00003221 NA coding upstream 165882 14878748 ~ 14886460 (+)
AMCG00003229 NA coding downstream 78986 15135212 ~ 15146285 (+)
AMCG00003242 NA coding downstream 100907 15157133 ~ 15161538 (+)
AMCG00003234 NA coding downstream 107498 15163724 ~ 15167974 (+)
AMCG00003238 LOC107736286 coding downstream 117904 15174130 ~ 15178215 (+)
AMCG00003233 NA coding downstream 148401 15204627 ~ 15216414 (+)
G141405 NA non-coding upstream 535832 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 543503 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 606987 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 998660 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1066916 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 129845 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 133757 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 161016 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 196614 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1742733 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 446794 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 752349 14283850 ~ 14299993 (+)
G141331 NA other upstream 867699 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 921067 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1308799 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1408068 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1470963 16527189 ~ 16559206 (+)
G141962 NA other downstream 2620053 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2665018 17721244 ~ 17725381 (+)
G142078 NA other downstream 3532348 18588574 ~ 18692204 (+)

Expression


Co-expression Network