AMCG00003232


Basic Information

Item Value
gene id AMCG00003232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15149269 ~ 15163406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003232
atgtacttcagCTCAGAAGTAGGGCTTCAGGGTGAACAGGCAAGAAAAGTACTTCATCATTTGGAGCAGTCTGTCCCTGGCCGTGTCAGAGTTCAAGCATTCCCTCTGATCAGTCCAGGCCCTtggaagcagaaaaacaaaacgtcCTCCTCCTACCTTGCATCTACAGTgccaaagcaattaaaacacaccAGGCATGAGATGGGCCCTCCTAGAGACTGTGTAATGAAGTCTCTGGTGGGCTGGACACAGTGTGGTGCGGCGGTGGTAGCCTTGAGGAGAGACTGTTTAATTGGAGCTGTCTTATCACCTATGGAGCTTGTGGAGGGGGGCTGGAACAGCAGATCAGGAGCGCAAGTGGTCAGCTCAGACGGGAAGTTCTACCGACACCCATCTGGGGACTCCAAGCCAAGCACGGATCCGAAAATCCTTGAGGAGGTGAGGTGTGACGGACAGGTGGGAGTCTTGGCTCTTGCTGTGCCCTGTGCAGCTCTTTCTGAGTTCCTGGTCCAGgcaagaggagaggagaagaccGGCTGGGTGGGCTACAGCTTGGCCCCACTTATGGCAGTGCCCGTTGTGGCTGTAGCCAGTGGCTTGGCGTCTGGCATCCTGCTTTTATTCTTGCTTGGGATTGTCGCTTATTTCCTGTGGAAAAGGAAGTGCTTTTGGGGGCACTACGAAGAGCTGGTCACCCCGACACCCAGTGTCCAATCAGGCTGCCCTGCCACGTCCCCGCCCTCTCACTCCGATGGGATCATCCCCTTTGTGGTGCCCCCCCGTTTCAACTTTAATCCCCGGTCCAGCCTGGAGGGAGAGGATGACGAGGGCTTCCCCACTGCCCCCCAGAGCCACCGCGGCTCCTTCACTGCCATGGACTCCTTCCCCCTGGGCAGTCTGAGGGCGGACCTGTATTGCCCCCCCAGTGAACCGTGTGAGTGGGCCCCACCCCAGGGTGGATCGGCCCAGCTGTGGTTCAGCGTGGAGTACCGGCGGGAGAGGGAGCAGCTTCTGGTGTCGCTCCTGAGGGCCGCAAACCTGCCCCGACCCAGCCAGGCCTGGCCCACCCTGGTCAAGCTGCACCTGCTGCCCGACAATCGGCGCCACCTGCAGGCCAGAGCCAGAGGCAAGGGCCGCAGTCCCCAGTTCAACCACAACTTCGTCTTCCAGgtgTCCAGCAAGTGCGTTCTGCAGTGCACTCTGCGTTTCTCCTTGTTCAGTGTGGACCGGCTGAGGAAGCACCAGCAACTGGGCCAGGTCCTATTTCCCCTGCGAGAGCCGGGGCTGAGCGAGGCGGCGGGTAGGGTGTTGTGGAGAGACCTGGAGACGCACGGTGCCGAGCCGTGCTCCGCGTGTGGGGAGGTCCAGGTGTCTCTGAACTACAACCAGTCTCTGCAGCGCCTCACGGTGGTGGTACTGAGAGCCAGGGGCCTACAGCTGCTCCCCGACAGAGGAGGCCTAGGGGCGTCACTGCAGGTCCACACGCGGCTGGTGAAGAGCAAGCGGACGGCGGCAGTCAGAGGGGAGAGCTGCCCCACCTTCAACGAGACCCTGACTTTCAAGCTGCCCTCCTCCCAGCTGGACGGGGCCTGCCTGAGCCTGGAGCTGAGGCAGTCTGAGCCGGAGCAGCACCGGTCCCTGGGCCTGGTAGTGATCGGGCCCTTCATGTTTGCCCGGGGTCAGGAGCTGGAGCACTGGAACGATATGGTCAGCAAACCCCAGGAGCTGGTCAAGCAGTGGCACCTCCTGAGCAGCGTGGCAGAGACACCCAGCCCCTCCTGA

Function

GO: NA

KEGG:

id description
K19914 SYT15; synaptotagmin-15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003232 True 1782 mRNA 0.61 12 15149269 15163406

Neighbor

gene id symbol gene type direction distance location
AMCG00003227 NA coding downstream 118468 15010021 ~ 15030801 (-)
AMCG00003223 NA coding downstream 175670 14963319 ~ 14973599 (-)
AMCG00003222 inpp5f coding downstream 233933 14888182 ~ 14915336 (-)
AMCG00003219 NA coding downstream 271253 14856090 ~ 14878016 (-)
AMCG00003220 NA coding downstream 299646 14832679 ~ 14849623 (-)
AMCG00003240 timm23a,timm23,LOC108426535,LOC107690962,LOC107684090 coding upstream 54421 15217827 ~ 15227554 (-)
AMCG00003241 NA coding upstream 65129 15228535 ~ 15234790 (-)
AMCG00003239 NA coding upstream 89463 15252869 ~ 15259374 (-)
AMCG00003244 NA coding upstream 141394 15304800 ~ 15315470 (-)
AMCG00003245 NA coding upstream 283580 15446986 ~ 15476398 (-)
G141517 NA non-coding downstream 480185 14630412 ~ 14669084 (-)
G141520 NA non-coding downstream 489278 14659419 ~ 14659991 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 702764 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 770956 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 775100 14373967 ~ 14374169 (-)
G141571 NA non-coding upstream 548 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 54068 15217474 ~ 15217807 (-)
G141681 NA non-coding upstream 825529 15988935 ~ 15992678 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding upstream 844657 16008063 ~ 16061038 (-)
G141740 NA non-coding upstream 1331432 16494838 ~ 16498441 (-)
AMCG00003231 NA other downstream 8450 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 474849 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 1718945 13407272 ~ 13430324 (-)
G141004 NA other downstream 2269848 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 2293928 12851021 ~ 12855341 (-)
G141826 NA other upstream 1584655 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 4380231 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 4638673 19802079 ~ 19876762 (-)

Expression


Co-expression Network