AMCG00003233


Basic Information

Item Value
gene id AMCG00003233
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15204627 ~ 15216414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003233
CCGCCACTCCGGGACTAGGGCAAGAGATCTCGCGAGAGGCGGCGTGGCCAGGCCCGGTGCGGGAGTGGAGCCGGTGCGCAGGCAGGGACAGTGTCTGAATAAGAGCCGTTTGACACTCGCACCCAGAGCACACGGTTAAGGGCGGACGGGCGGATTTTGGGGGCGAATTGAGGAAGATAAACCAGTGACAACCGCGTCGTCCCCTGATTCCCGACAGGAACCGCCGCATACCAGCCAGCGCAGAATGTCGCCCCCCGGTGAGGATCATGAGAGCGATGCTTTCATGCAGTGCCAGCAGGCCTGTGGGCAGCTGGAAACCGCCATCGCTGCAGTGACCAGTGCGGAGCAGCAGCTGAGAGAGAACTCCAGAGAGGTGAAGTCTCAGCTCCACAGTTGTATCAGCCGGCATCTGGAGTTCCTGCGCTCTCGGGAAGTCTGGCTGCTTGAGCAGATTGAGATCGTCCAGCATCTCAAAGAGGAGGCCCTTCAGCAGCAGCTCCAACAACTCCATTGGCTCCTGGGTCAGTTCAACATCCTCATTCACCAGCTGGAGAATTCCAACAGCAACGACCTGGCCAATCAGATCACCTGCTGTCTGGAGAAGTTGTCCAGTCTGAACCTGACACCGGAAGAGACTCCGGAGATGAGTTTCCAAGCCGACGTTCGATCTCTGCGGAAGGCCATCACTTCCTTCGGGACAATCGCCACACAGGAGATTGAGCACATGACCAACATGCCGGCACAAAACGCAAGCCCCTCTGAAAATGCCTGGCTCTTCCAGAATTGCCCCATAGCTGCTAAGAAGCCGAAGATAGAGCCTGTGCTGGCATCGCCTCTTGCTGATTGGCTCCTTGGAAGCCGCCCAGCGTCCAGACGTCCAGTAGCATGCCAGTGGAGTAGCGACCCACAGGACTGGCTGCTCAAATCGGAGGGGGGAGTCCAGATGAGCACCCCTTCTGTGACCTTTGACTTGCAGAAGGCCTGGGGCCAGCTGAAGGACCTAGAGGCCTGGGTGCAGAAGGAGACGGCGCCCCCTAGAGAGCGCTCCATGAGTGTCGCCAGCAGCTCGGCTCAATCCATCGAGAAGATCGAGGACTCGGAGCTCAACTTCAGCatggaggaacaggaggaggagggcgaggAAGAGGGGCAGGAGTGTGACCTCAGTGATTGGCTCGTGACACCCGCCGTCGGGGAGAAGTGGGATTCCCCTGAGAGTTCCCCGCTGGATGACAAGTGGAAGGTAGTCCTCCAGCCCTTTTCCGAGCGCTTCTCCCCCAGCGATTGGCTGCGCCGCTCTGAGGCCAACTGCGGCTCCTGCTGTGGCACCCGCACCCAGGCGGTGGAGATCGAGAACCTCGGCAAACTGAAGTGCCTGAAACAGagccccgcccccgcccccgtccccgtccccgcccctgcccctgcccctgccccggCCCCCTCCGGCTCTAGTGAAGCATGGCTCCTGCCACCCCCCCCGGTCCAGGTGGAGCAGGTGTGCAAGGCCAACGAGCCCTGCGGGAGCCTCTCGGAGTGCGTGTGCGAGGAGAACTGCGGCAAGGAGGCCCTCTGCTCCTGGCTGCTCAAGCAGGAGGGGCGCGACAAGAACGGGGTACCGGCGGATAAGAACAGGCTGCCCGTGCCGTTCCAGCATCACATGGTGGAGGCCATCCTGGACAGCTGGCTGCACCCCAGCAAGAAGGGCACCCCCTCAACATCCCCTCTCCCTGCCTGGCTGTCCCCTCATTCCCAGGGCCAGGAGAAGGCCAGCCGCGAAGAGCAGAGCTCTGAGTACAAGAGCCCCTTCCACAGCTCACTGCGCCTTGACAGCTGGGTCCTGCCTGCACAGACGCCCAGCACCCCCGCCCCCCAGGGCCACCCAGAGACCCAGGGCCACGCAGAGACGCAGGGCCACACCAGCACAAAGGAGGACAAGTGGCTGGTGCGCAAGAGAGCACAGGAGCAGTTTGGTCTTCCAACAATGCGTGAGCTTTTTGCCCGTATGCAACTCAGCGGGGACCAAGACAAGTGGTTATACAGGACTCCTCTACAGatGTGACAACCCTAGGAATTAGCTgtggatgatttttttttttttttgggacaCGAGCCACTCAATTGCTGATCATCGCACACTTCTATCTCGATTTGCCTTTCTTTGCCACTCTGTCAAGATTGGActgctttctctgtctctgtgggcAAGTTGGGGGGTTTCTACAATTCTGTATACAAAGGTGGTGGATTCTTCTCTTCATGGTGCGGGCCTGGAGATGGACAAGCCCCTCTGTGTTTGATTGGTCCAGTCTGAGAGTTCAGTGCGGTGGGGGTTGCCTGGCCTCTTTGAATCAAAGAGGGGAGGTCCCACAAAGCAATCCCTTGCAGGGGGTAGTAGTGGAGCCAAGAGAAACCTCCTCAAAGGTGAACCAATGGAGTTATTCCAGAGCTAATCTAAAGGAAGTGGTCCATTACAGGAAGAGAGTGTTGGCTCTGTACAGTAGACACAAAACCAACTCGGAAATAGCTCTTGTACAGACCAGTGGTGCACTCTGGATTAACTCCTTTAGGCTCAGTTTTGGGTGAGGTTAAAGTTGcaggaaggaaaggaaaagcatctttaaatttaaatgccGCATTTTGGTAGTCAATTTGATACAAATATAagaattgtgatttattttaattgatcaaaagatttttagattattttgtttttaaagtttgctTTTAAAGTGTGTAGtaagctttgtttttaaatgggctGGTGTTTTCAGGGTGTGAGCAGAGATCTGGTTTAATTAAATGGCTTTCACAGCCAACTGCTTCAGTCCATAGAAGACCAGGCTGGGCAGTTATTACAGAAGAAGATATTCATCCATTTTAGTGGCAACAATACCAGTTTCTTGATGGGGGTGGGGTTTGTTCTTCTAGTAGAGAACTTGCAAAGTAGCCCATTTCTTCAGCTACAGAGTAAACATCTGGACACCAGCCGCTGCTCACAATAACCGATTTCCTCTGTTCTCTTCTATATTCCGTTGTGAGTGTATCCTATGCCACAGAACCATGTCTCCAGCTACACTTGGTGCTGGTTTCTGCCtattatattgtgtgtattggATTGATCTCAATTGAGTATTGAGCAAAATCATACAGAGCAGCAATTGTAATCTTCTCAAGTTGCTCAGATCAACATGTTCTAAATGTGACTAATTTTCCCATAAGATAGGAGGGGTAGGACAATGCAATATGGTTGATCTTCAATATAAAGATCTGACTTCCTCTTCAGTTTTACATCTTTTATATTCTGACCAACAGGATATCTTCTGAAATATCTTCTTGGGGGGGAGGTGAAGGTTATCGCCTGTTATTAACTactaacttttatttttaactgcataTATTGCAGGGGTTTGTAGCTATATGTTAGTTAGTCTCTGAGGAATGTCTTTTAACAATTCAGGTCAGTTCAGTCAAGGTGCTAAGTGGACACAGTGTCAGCTGCAGTCCCAGCCTTGTTTGTCGCTACAACTTCATTCAGCTTCTTCAAACTCGTCTACCCGTATAGCCTGCCGAGCCTCTCCAGCAAACTGGGGCTATTTATGCAAGTGCTTCACAATGTTAATACTAgatagaaatatttattttaagtattacaaattacaagtgcTGTGATCTAGACCATATATTACTTAtctcttaataaaaacaaagaaaacttgTCTGAAA

Function

GO: NA

KEGG:

id description
K09289 NCOA4, PTC3; nuclear receptor coactivator 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003233 True 3729 mRNA 0.52 10 15204627 15216414

Neighbor

gene id symbol gene type direction distance location
AMCG00003238 LOC107736286 coding upstream 26412 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 36653 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 43089 15157133 ~ 15161538 (+)
AMCG00003229 NA coding upstream 58342 15135212 ~ 15146285 (+)
AMCG00003230 NA coding upstream 148401 15052342 ~ 15056226 (+)
AMCG00003236 NA coding downstream 24087 15240501 ~ 15250404 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding downstream 49707 15266121 ~ 15267591 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 51807 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 72210 15288624 ~ 15301140 (+)
AMCG00003247 NA coding downstream 670702 15887116 ~ 15891866 (+)
G141574 NA non-coding upstream 14282 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 18302 15186071 ~ 15186325 (+)
G141405 NA non-coding upstream 688117 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 695788 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 759272 14443857 ~ 14445355 (+)
G141582 NA non-coding downstream 828 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 36426 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1582545 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1816011 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2301306 17517720 ~ 17517921 (+)
AMCG00003207 NA other upstream 599079 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 904634 14283850 ~ 14299993 (+)
G141331 NA other upstream 1019984 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1073352 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1461084 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1247880 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1310775 16527189 ~ 16559206 (+)
G141962 NA other downstream 2459865 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2504830 17721244 ~ 17725381 (+)
G142078 NA other downstream 3372160 18588574 ~ 18692204 (+)

Expression


Co-expression Network