AMCG00003235 (bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260)


Basic Information

Item Value
gene id AMCG00003235
gene name bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15268221 ~ 15284542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003235
GGTTCACACGTGAAAACAGTGCAGCATTGAGGCAGAGGGATTGAAACATCGCTGCACTGGGAATCGCCTGGACTGACTGGACTGAGATCAACCGGAGATCACGAAGCCACAGCCAGTGGCTACATTGGAAGAGACGCGGAAACTTCTGATGGTGTGAAGATGGAGGCGAAGGATCACAAGAAGCACCAGAAGAAGCTGAGCGGCCCTAAGGCGGTCaggaagaagaacaagaagcagcaggagcagggcgtggaggaggagaaggatgAGAGGAGAAGGAACCCCAAGGCCTTCGCCGTGCAGTCGGTGGTGCGCATGGCCAGGAACTTCCACAGGACCCAGGACCTAAAGGCCAAGAAGCACCACATCCCCCTGGTAGACCGCACCCCCCTGGAGCCTCCGCCCATCGTGGTGGTGGTCGTGGGGCCCCCCCGGGTGGGCAAGAGCACCGTGATTCGCTGCCTGATCAAAAACTTCACCCAGCAGAAACTGAGTGAGATCTGCGGGCCTGTGACCATAGTGTCAGGGAAGAAGAGACGGCTGACTTTTATTGAGTGCGGCAACGACATCAACACCATGATCGACTTGGCCAAGGTGGCTGACCTGGTCCTAATGTTGATCGATGCCAGTTTTGGATTTGAGATGGAGACCTTTGAGTTCCTCAACATCTGCCAGGTGCACGGCTTCCCCCGCATCATGGGGGTCCTCACCCACCTGGACTCCTTCAAGAACAACAAGCAGCTACGCAAGACCAAGAAACGCCTCAAACACCGCTTCTGGACTGAGGTCtaccaggGTGCCAAGCTGTTCTACCTGTCAGGAATGGTCCATGGCGAGTATCAGAAGCAGGAAGTGCGCAATTTGGGCCGCTTCATCTCTGTGATGAAGTTCCGTCCGCTGGTGTGGCAGACCTCCCACCCTTACGTGCTGGCGGACCGCATGGAGGACCTGACGGACCCCGAGGCCATGAGGGTGGACCCCAAGTGTGACCGCACTGTTTGCCTGTACGGCTATCTCCGTGGGTCATACCTGAAGAACAGGAGCCAGGTCCACATCCCAGGCGTGGGCGACTTTGCTGTGGCTGACGTGAGCTTCTTGCCGGACCCCTGCCCACTTCCGGGGGAGCAGAAGAAGCGAGCTCTGAATGAGAAGGAGAGGCTGCTGTACGCCCCGATGTCGGGCGTGGGAGGGGTGGTGTACGACAAGGACGCCGTCTACATCGACCTGGGGGGCAGCCACGCTAACCAGCAGCAGGAGGAGCCCAGGCCAACTACAGAGCTGGTCCAGTCCCTCATTGGCACACACGCCACACTGGATGCCAAGATGGCCGCCAGCAAGGTGTCACTTTTCTCCGGCACTGCAGCCATGACGCCAGCGGAGGTGGAAGATGCTGGAGACAACACCTCGCCCTCTGAGAGTAGAGTGTTTGACCCccagacacagagggagaggaggagagcggTCTTTGCTGAtgaagatgaggaggaggatgagagTGAAGGAGATAGcgagggagaagaggaggaggaggaggagggagagggagagagagagagtgggagtgagagtgaggaggaggaggaagatgatggtgctgagagtgagggagaggacAATGAAGGAGAGAAGATCCTGAAGGGGAAGGAAGAGCAGATGACGCAGGGAGCCCCCGTGCCTGTGAAGAGACGGCGagtggaagaggaggaggaggaggggaagaaaggaGAGAATGAGGTGCCGGCCTTCGCAGACAGCGAGGATGACTTGGAGCTGagcgagggagaggaggagagtgaaggagaggagtTGGagactgaggaggaggaggaggaggaggaagaaaaagagagggatCGTGACAGTGAGAGAGGGGGCCAGGGGGTGGCGGATTCAGGACATTGTtcggaagaagaggaggaggaagacgacGACAacgatgaagaggaggaggaagaatcTGGGGCTTCTGAGATGGGAGAGGACCTTCCCAAAAGCAGCAATGGTGTCAAGGGGTCAAACGTAAAGCCAGAGCAGGAGAAGATGGAAGAGGAGGGAATCCTGTGCTTTGAAACCGAAGGTGCCCTGCGTTGGAAAGAGGGGTTGGCGCAGAAGGCCGCAGACGTGTTTCTACGGCAGCAGCAAACCAAGGTCAACCTGCGCAAGCTGGTGTACGGCACAGtggcggaggaagaggaggatgagggCGAGGATGAGGAGGAGCTGGGGGGGCTGTTCCGTGTCAGCCGACCCGAGAAGGGCAAGAGGCAGCGGGCTGACGGGTTAGACTGTACCCGGTACCCCCCTGACGGCACCCACGACTGGGACCAGGAGGAGATGCTGAACTCAATCCGAGACTGTTTCGTCACGGGGAAATGGGAAGAGGGCAAGGATGCCGCAACACTTCTGAAGGAGGATGAGGACATGTACGGTGACTTTGAAGACTTGGAAACGGGAGAAGTCCACAAGGGGAAGTCTGAGAAAAAGGAGGACCAAGAAGAGGAGCCGAGTGGAgaagaggacgaggacgaggagaaggaggaggaagtgaTGAAGGTGTACGATGacgaggaggagaggaagaaagcCCGTCTGGAGAAGAAGCGGCGCCTGAAGGAGCGCTTCAACTCGGAGTACGACGAAGGAGACGCCACCTACTTCGACGACCTCAAGGAGGAGATGCATAAGCAGGCAGAGCTGAACCGGGCCGAGTTTGAGGACGTGGATGACGACCTCCGAGTCCAGTACGAAGGCTTCCGGCCTGGGATGTACGTACGCCTGGAGATCCCCGCTGTGCCCTGCGAGTTCGTCACAAACTTCGACCCCCACTACCCTGTCATCCTCGGGGGCCTGGGCGCCAGTGAGGGCAACGTGGGTTACCTGCAGATGCGTCTGAAGAAACACCGCTGGCACGGGCGCATCCTGAAGACCCGGGACCCCCTGATCATGTCTCTGGGCTGGCGCCGCTTCCAGACCATCCCCCTGTACCACATCGAGGACCATAACGGCCGCCACCGCCTGCTCAAGTACACCCCCTTGCACATGCACTGCGGGGCCACCATCTGGGGGCCCATCACCCCGCAGGGCACTGGTTTCCTGGCCGTTCAGTCAGTAGCTGGCACTCAGTCTGGCTTCCGCATTGCTGCCACTGGGGTGGTGCTGGACCTGGACAAGTCGGTGACCATCGTGAAGAAGCTCAAGCTGATTGGCTACCCCTACAAGATCTTCAAGAACACAGCCTTTATTAAGGGGATGTTCAACACTGTGCTGGAGGTGGCGAAGTTCGAGGGAGCGTCTCTGCGGACAGTCAGCGGGGTGCGTGGGCAGATCAAGAAGGCCCTGAGGACTCCGCTTGGAGCCTACAGGGCCACCTTCGAGGACAGGCTGCTGATGAGCGACATCGTGTTCCTGCGCTCCTGGTTCCCTGTGTCCGTCCCCCAGCTCTATAACCCCGTGACCTCTCTGTTGCGGCCCGTGGGGGAGAAGGACAGCTGGACGGGGATGAAGACGGTGGGCCAGCTGAAATATGAGCAGGGCATCCGCCGCCAGCCTGAAAAGGATTCACTCTACAAGCCTGTGGTGAGGGCCAAGCGACACTTCAACCCCCTGCACATTCCCAAACAGCTGCAGAAGGCCCTGCCCTTCAAGAGCAAGCCCAAAATGACCGAGAAGAAGGGCAAGGTGCCCCGGGACCTACAGAGACCAGCTGTAATCCGAGAGCCACATGAAAAGAAGGTGGCCGCCCTGCTGACTGCCCTGAGCACCGTGCACAGCtacaagaagaagaaagccCGGGCCAAGCAGCGCCTGCAGCACAAGGGCTTCCTGCGGCAGAAGGAGCAGGAGGAGATGGACAAGCTGAAGAGGCAGAAGGAGGCGCGCAAGAAGATGTACCGCGTCATGGGGCAGAAGGAGAAGAAGCAGCAGAAATCGAGCCTGAGGGGGGCGAGGAACGATGACTGAACAGGGAAACCGTGTGTGTGTTCTTGCTTCTCACACAAGAGTACTGCCCACACCGAAGCATACAGATGGACAGTCCCCAATGTTACAGATTCTGATGTCTGTTTTAACAGGAGATTGGTATTGAAGACAATTGGGCTTTAATTGTCCTTTTTACAGGAAGATGCCTTCagtgtttcatgtattttaatgctGAAAGACTGGCGTTGCTCTGGTTGGTATCTGATCTCGCGTGTGGCTACTGTATGATAGTATAAGTGGAcgccacacagacacataccTGCGCTTCATTGTGAACTGTGATAATTAACAGCCCTTAATGAATCTCGCACAGGGTGTGAGTAATGACTTCTAAATTACACCGCAATGGGACTCGTCACTTGCTCTGTATAATAAATCGTTTTTTTATTATACGTTTTTTATCCGAGTATGTTAATGTGCCCT

Function

symbol description
bms1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Acts upstream of or within liver development; pancreas development; and rRNA processing. Located in nucleolus. Is expressed in gut; liver; pancreas; and retina. Human ortholog(s) of this gene implicated in nonsyndromic aplasia cutis congenita. Orthologous to human BMS1 (BMS1 ribosome biogenesis factor).

NR:

description
PREDICTED: ribosome biogenesis protein BMS1 homolog

GO: NA

KEGG:

id description
K14569 BMS1; ribosome biogenesis protein BMS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003235 True 4401 mRNA 0.57 23 15268221 15284542

Neighbor

gene id symbol gene type direction distance location
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding upstream 630 15266121 ~ 15267591 (+)
AMCG00003236 NA coding upstream 17817 15240501 ~ 15250404 (+)
AMCG00003233 NA coding upstream 51807 15204627 ~ 15216414 (+)
AMCG00003238 LOC107736286 coding upstream 90006 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 100247 15163724 ~ 15167974 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 4082 15288624 ~ 15301140 (+)
AMCG00003247 NA coding downstream 602574 15887116 ~ 15891866 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 643226 15927768 ~ 15931031 (+)
AMCG00003249 LOC105010526,LOC106607942 coding downstream 687253 15971795 ~ 15992523 (+)
AMCG00003253 NA coding downstream 1140344 16424886 ~ 16448261 (+)
G141592 NA non-coding upstream 13377 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 50670 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 77876 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 81896 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 759382 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 1514417 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1747883 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2233178 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 2418630 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 2428118 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 662673 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 968228 14283850 ~ 14299993 (+)
G141331 NA other upstream 1083578 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1136946 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1524678 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1179752 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1242647 16527189 ~ 16559206 (+)
G141962 NA other downstream 2391737 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2436702 17721244 ~ 17725381 (+)
G142078 NA other downstream 3304032 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_02892577_02901154 BMS1 coding CI01000055 null 2892475 ~ 2901826 (+)