AMCG00003236


Basic Information

Item Value
gene id AMCG00003236
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15240501 ~ 15250404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003236
ATGAACTTTGCAGCCCAGTTCCTCTATTCGCACTACAAGAATAATGGCAACCCTCGCGAGGCCGGAGGCTCAGACAGCGAGGAATATGACCCCTTCTGGCAAAGGTCGGCCACTGCACCCCCTCCCCAATCCGATGACACCCCTAGAGAGAGGCAGCCGCTTACCCAAGCCCTCATAGCTacccctcttcttccactacctcctcctcctcctcctccacctcctcctcctctccagccCCCTGAGGAGCAGCCAAGCAGTGCTTGCCAGAATGACCCATCACTCCATGAGGGGCAGTGCAAAAAGAATGGGCCAATCAGGAACGGCTGTGGGCCTTCCCGGCCAACCCCCATCAACCCCGAACGGCTGAAGGACTTTGGGGAGGAAGAGTACTTGAACGGGGATGTCAAGACCTGGGAGATGAAGATCGTAGGGCGCCCAGAGCCTCTGCTGGGAAACCCAGTGGAGAAGCAGCCCAAGGCCGTGCGCCGGCCCAGCGTGAAGCCCCCCGCCGAGTTCATCCGCTTTGAGGACATAAGCGCCGCTGCCTTCAAGATCCAGTCCGGAGTGCAGAAGACGCCCTGCACGtattcCCGCTTGTCCAAGCAGTATGGCATGGAGATCTTCCTGAAAAAGGAGCACCTCCACTACACGGGCACAGTGAAGGAGCGCGGCGTGCTCTATCTCCTCACTTCACTGCGCCAGAAGAAGGGTGTGATCGTGGCATCGGACAATAACTTCTCCATGGCGGTGGCGCACCACGCCTGTGAGCTGCGCATCCCTGTGTTCGTGATCATGGCTGCCAGCAGCTCCCCGGTGCGGCTGAGGATGTGCCGGGATTACGGCGCCATGGTCATCTCCTACGGCAGCACGCCCCGCGACTCCCAGAGCCACGCCCGCCGCCTGGCGCAGGAGAATGGATACGTCTACCTGGACGAGGAAGACACTGCCATCTACCTGGCAGGACTGGGCACAGTGGGGCTGGAGGTGTTCGAGCAGGTGCCCAAGCTGGATGCGGTGGTTGTGCCCGCGGGGGGGCACTGCGGCCTGCTGGCCGGAACAGCCGCTGCACTCAAACACCTCAACCACAGCATCACTGTTATTGGGGTCGAGCCGGAAGAATTCCCCCTCCTGCAACAGTCCCTGAAAATCGACTATCCTGTCAAAGAACTCGCCAGCGCCCCCAACAGGAAGCTCTATGGAGacCTGGTTTCCCCTCCCTTTGGGAACAACGCCTTTCAATTGGCCAAAAAATTGGTGGACAAGGTCATCACTGTCAGTGAGGAGGATGCCCTGGTGTCCATGCTGCGCTTCCAGGAGTATGAGAGAGCAACCGTGGACACCGAGGGAGCCATCGGTCTGGCAGCCATTCTGGCGGGCAAACTGGAGGAGCTGAAGGGCAAGCGGGTGGCGGTGGTGGTGACCAGCGCGAACATGGAGCTGGGCCTGATGAGGCAGTGTGTGGAGCGGGCACTGGTGCTGGACGAGCGGGTCAGCAAGTTCACTGTCCAGCTGGGGGAGTGGCCCGGGGAGATGGCCAAGCTGCTGGACCTGCTGGCCAGGGAGGACCCtgatctgtctgtgtgtctggtgTCTCAGGTGTCGTGTGTGGTGGAAACCAGGGACAAGTCCCAGACGACCCAGCTCCGCAATGCGCTGTCCGAGCGTTACGCCACACTGCACTGGCACGAGCGGTGA

Function

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003236 True 1698 mRNA 0.61 10 15240501 15250404

Neighbor

gene id symbol gene type direction distance location
AMCG00003233 NA coding upstream 24087 15204627 ~ 15216414 (+)
AMCG00003238 LOC107736286 coding upstream 62286 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 72527 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 78963 15157133 ~ 15161538 (+)
AMCG00003229 NA coding upstream 94216 15135212 ~ 15146285 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding downstream 15717 15266121 ~ 15267591 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 17817 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 38220 15288624 ~ 15301140 (+)
AMCG00003247 NA coding downstream 636712 15887116 ~ 15891866 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 677364 15927768 ~ 15931031 (+)
G141582 NA non-coding upstream 22950 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 50156 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 54176 15186071 ~ 15186325 (+)
G141405 NA non-coding upstream 723991 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 731662 14500971 ~ 14508839 (+)
G141592 NA non-coding downstream 2436 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1548555 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1782021 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2267316 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 2452768 17703172 ~ 17703460 (+)
AMCG00003207 NA other upstream 634953 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 940508 14283850 ~ 14299993 (+)
G141331 NA other upstream 1055858 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1109226 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1496958 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1213890 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1276785 16527189 ~ 16559206 (+)
G141962 NA other downstream 2425875 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2470840 17721244 ~ 17725381 (+)
G142078 NA other downstream 3338170 18588574 ~ 18692204 (+)

Expression


Co-expression Network