AMCG00003237 (mxtx1,LOC107666529,LOC108415850)


Basic Information

Item Value
gene id AMCG00003237
gene name mxtx1,LOC107666529,LOC108415850
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15266121 ~ 15267591 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003237
GTCTCCGGACAGGCCAGCCAGGGAGTCCAGGCCCGAGGGGCCAGCCGCAGAAAGAGGACCTCTTTTACCAAGGAGCACGTGGCGCTGCTCATAGCCACCTTTGAGCGCGACCCCTACCCCGGCATCAGCCTGAGAGACAGCCTAGCTCAGACCACCGGACTGCCGGAGTCACGCATACAGGTGTGGTTCCAGAACCGAAGAGCCCGAAGCCTGAAAGGGAAGGGCAACAGGAAGTGGAGCCAGGAGCCCCCTCACCCCAGCGCTCAGCCATCCCCCACACAGACCCCCTCCGTACAACCGGGCTGGGGCACACTTCAGGGCCCTTATCAGGATGCCACTGCCCTCTGCACGCCCAGTGTAGCCCGTTCATCCATGCAGCTGCGTCTGGTGAAGCGAGAGGAGGATTGCTTCTATAGTCGCTTTCCCCCCTGCTTCGTCAGTGGGGCCGAGGCCCAGCTCCCGGCTGGACACAGCAGCGGCTACGAGCCTGCCAATGGGCTGAGGCAGGGCAGACTGCTGGGCACCAGCTCCAGCCCTCCTCAGCCAAGCCCAGGTTACCAGCTTGTGccagggggctggggggctgtgGTTGTCCAGACCCCCTCTGAATCCATGTGGACCCCTTGCTCCCCACTGGAGGTCAGCCACTGCAACTCTGAGTCTGCGCACGCCTTCCTCTACCCTTCTCAGACCGGGTACCCTACTGTCTATGACCAGCAAGCTGGGGGCCCAGGCTGTGCCAGGGGCTCAAGCGTTCGTTCTCAGTCTACCACTCCCTCCACACCGGACTCTTCCTGCTGGGAGACTCCCCAGCAGATACCCCCTCCTGCCTACCAGAGTAACCAGTTCAGGGGCTCCCCTGTCTCCCAGGAGGGCAACCCCAGCTGCCTGCCCGGGTCTGATCCACACAGTTCCCCCTGCAGTGCGTTCCGACCGGCGCAGTTCAGTTCAGGGTTATCGGCCCCGGACCCCGACGGTGCCCTTCCTCTGCTGTCCCTGCAGGACCTGCTGGCGGAACTGCAGCCCGAGTGGGGAGCATCTGGAGACAGAGAGCTCATCTACTGCTGA

Function

symbol description
mxtx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including embryonic heart tube development; positive regulation of transcription, DNA-templated; and somite specification. Predicted to be active in nucleus. Is expressed in yolk syncytial layer. Orthologous to several human genes including DUX4L1 (double homeobox 4 like 1 (pseudogene)); DUX4L2 (double homeobox 4 like 2 (pseudogene)); and DUX4L4 (double homeobox 4 like 4 (pseudogene)).

NR:

description
mix-type homeobox gene 1

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24896 DUX; double homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003237 True 1068 mRNA 0.64 2 15266121 15267591

Neighbor

gene id symbol gene type direction distance location
AMCG00003236 NA coding upstream 15717 15240501 ~ 15250404 (+)
AMCG00003233 NA coding upstream 49707 15204627 ~ 15216414 (+)
AMCG00003238 LOC107736286 coding upstream 87906 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 98147 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 104583 15157133 ~ 15161538 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 630 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 21033 15288624 ~ 15301140 (+)
AMCG00003247 NA coding downstream 619525 15887116 ~ 15891866 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 660177 15927768 ~ 15931031 (+)
AMCG00003249 LOC105010526,LOC106607942 coding downstream 704204 15971795 ~ 15992523 (+)
G141592 NA non-coding upstream 11277 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 48570 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 75776 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 79796 15186071 ~ 15186325 (+)
G141405 NA non-coding upstream 749611 14462167 ~ 14516510 (+)
G141829 NA non-coding downstream 1531368 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1764834 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2250129 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 2435581 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 2445069 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 660573 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 966128 14283850 ~ 14299993 (+)
G141331 NA other upstream 1081478 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1134846 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1522578 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1196703 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1259598 16527189 ~ 16559206 (+)
G141962 NA other downstream 2408688 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2453653 17721244 ~ 17725381 (+)
G142078 NA other downstream 3320983 18588574 ~ 18692204 (+)

Expression


Co-expression Network