AMCG00003238 (LOC107736286)


Basic Information

Item Value
gene id AMCG00003238
gene name LOC107736286
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15174130 ~ 15178215 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003238
ATGAGCGTCAAGAGCCTACTGCTGCTGTCCGTCTGCCTGCTGCTCGCTGTGACCCAAGCTTTCGCCCCCGGGCGCCATCTTCAGCACAAAGTCCTTCACCTCGACTGGCCCAAGGACTGTGGACTGGCCCACTTCAAGCCCAACACAGCGGAGAGGATTGTGTCGGGCAATGAGGCGAGACCTCACTCCTGGCCATGGCAGGTGTCACTGCAGGTAACTACTGGGACAGCAAAGCTATCCCCACACTGCTGTGGCAAGGAGATCCAACACTACATTTGCCACAATAATGTTCTTTCCCAGATTTCCCTTATGCCCCATTTTAATACAGCATACAGAGACTTTTTCCCCAAAGACACGGAGAAAGGGGCAATCTGGGGCAATCTTACTTATGCCCCACATTTAAAGGAGGCGGGGAGCTGGCGGATCATCCTGGGGAAGCACCAGCTGAAGCAGTTCGAGACAGCCGAGCGGGTCTTTGCCGTGCGCAGAATCTACCGGCACGAGCGCTTCCGCTACCCGGCCCAGAGCGAGCTGGACTATGACATCGCCCTGGTCAAGGCCGCCAGTGATATCACCCCTAGCAACTTCATCCGCTACGCCTGCCTGCCGGGCAAGGAGAGCGCCCTCAAGCCGGGGCACTACTGTTGGGTGACGGGCTGGGGGGACACGAGAGGCAGGAAGGAGAACGTGTCTCTGGCTGAGGCACTCAACCAGGCCCGTCTCCCCATCATCGACTTCAAAACCTGCCGGCAGAAGAAGTTCTGGGGAGAACGCGTGCGAGACTCCATGATCTGTGCGGGCTTTCGCGACACCGAGGGCCCCCCTGCGGCCTGCCAGCTGAGCCGAGACCGCTGGGAGGTGCACGGGGTGGTGAGTTTCGGGCCCATCGGCTGCACGGTGGAGAACAAACCCAGTGTGTTCACCCGCACTGCTGTCTACATCCCCTGGATCGAAGCCACGCGGATCAGAGACTTCTTCCTGCACTGA

Function

NR:

description
PREDICTED: chymotrypsin-like elastase family member 2A, partial

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003238 True 987 mRNA 0.59 5 15174130 15178215

Neighbor

gene id symbol gene type direction distance location
AMCG00003234 NA coding upstream 6156 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 12592 15157133 ~ 15161538 (+)
AMCG00003229 NA coding upstream 27845 15135212 ~ 15146285 (+)
AMCG00003230 NA coding upstream 117904 15052342 ~ 15056226 (+)
AMCG00003228 NA coding upstream 134366 15035951 ~ 15039764 (+)
AMCG00003233 NA coding downstream 26412 15204627 ~ 15216414 (+)
AMCG00003236 NA coding downstream 62286 15240501 ~ 15250404 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding downstream 87906 15266121 ~ 15267591 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 90006 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 110409 15288624 ~ 15301140 (+)
G141405 NA non-coding upstream 657620 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 665291 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 728775 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 1120448 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1188704 13981375 ~ 13985426 (+)
G141573 NA non-coding downstream 7856 15186071 ~ 15186325 (+)
G141574 NA non-coding downstream 11768 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 39027 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 74625 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1620744 16798959 ~ 16801312 (+)
AMCG00003207 NA other upstream 568582 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 874137 14283850 ~ 14299993 (+)
G141331 NA other upstream 989487 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1042855 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1430587 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1286079 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1348974 16527189 ~ 16559206 (+)
G141962 NA other downstream 2498064 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2543029 17721244 ~ 17725381 (+)
G142078 NA other downstream 3410359 18588574 ~ 18692204 (+)

Expression


Co-expression Network