AMCG00003243 (tspan14,tsn14,LOC106577130,LOC107743579)


Basic Information

Item Value
gene id AMCG00003243
gene name tspan14,tsn14,LOC106577130,LOC107743579
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15288624 ~ 15301140 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003243
gttctgcgcagatctgcacaatccctccgatcccattggtggaggcAGGCATCTGCGCAGCACGAACCCATTGACGTGCGTCCAACAGGGCGTGGTTTCGAAAGGAAGCGTGTCCGAGGAGATTTGCCAGAAGACTTTTGTAAACTCGCGTTGTCtaagctgaaaacaaaaaagcgAGTAAATAGGAGCACAATGCAATATTATCGCTATGAGAATACGGAGGTTAGCTGCTGCTATAAGTACCTGATGTTCAGCTACAATATAATCTTCTGGCTTGCAGGCGCAGCGTTTATTGCCATCGGCTTCTGGGCATGGAGCGAGAAGGGGGTGCTGCTGGACCTGACCCAGGTGACCAGGATGCATGGCTTTGACCCAGTGTGGGTGGTCCTGGTCGTGGGCACAGTCACCTTCATCCTGGGCTTCGCCGGCTGTGTGGGAGCCCTGCGGGAGAACATCTGCCTGCTCAAGTTTTTCTCCGGTCTGATCGGCTTCATCTTCTTCCTGGAGCTGACGGCGGCGGTGCTGGCCTTTGTGTTCCAGGACCCGCTGAGAGACTGGATCAGCGACTTCTTCCTCACCAACCTGCGGGGCTACAGGGAGGACATCGACCTGCAGAACCTCATCGACTCCCTGCAGAAGCTGAACAGCTGCTGCGGGGCCCAGACCCCGGACGACTGGGACCTCAATGTGTATTTCAACTGCACCGATCTGAACCCCAGCCGGGAGAGGTGCGGCGTGCCCTTCTCCTGCTGCCTCATCGATCCTGCTGATGTGGTCGTGAACACGCAGTGTGGCTATGACGTCAGGAGCAAGAAGAGCACTTGGAATAATTTCATCTACGTCAAGGGCTGCATCCCGGCGCTGGAGGAGTGGTTACCCCGGAATATCTACATCGTGGCGGGGGTCTTCATCGTCATCTCCCTGCTACAGATGCTGGGGATTTTCCTGGCTCGGACACTGATCAGTGACATCGAGGCGGTGAGATCCAGCTATTCTTACTGAAGGTCCGGCGGTCTCCGGGAGCCGCCGCCCACAGCTGGTTTACGGACAGCAATGAGAGACTACACCGCTGCTGCCATTCGGAACCCAGTTGAGGGGGCCTGGCAGGACTCGAGCTTTGTGACCGAGATGTGCCACTTTGCAACCGTCTCTGGAAGATACCAAAGTTATTGCTCCTTTTGTGTGACGAGCCGAGGGAGTGCAGAGGGCCCTGACAGCCGCTCTCACACCCCAGACCTGCCGCGGCTCCGCTTTCTGAGCAGCCGCCTTCACAAAGCAAATGAGATTCGCTCTCCACTGGGGAGCAGCTGATTTCcatgtttaatatatagatttgtCAGTAATGTTGAAAGCTTTCACAGCGTGTTCGATCTAATGGGTGTCTTTCTTCCCTCGTTTCTTACACTTGACTTCTCCCAGcccaagaaaaaaaagcaccaCAATTTGAAATCATTCTTCCCAGATCCAGCCTGAGTTCTTGTTCAAGGGGGGGGGTCAAACTTAAAGCATAATCTGCCTTATTCATGTTTCTGCTCTGGTTTTTAAGCCTATACTCCATGACTTTTTTTCCAGTGCAGTGGAGAACACATAGAAAATGCCacatgtgtgtgttgggttATATGAATTAAAGTTAGGAGGGCAAATGGTGACCTTCCCGTTACTGTCCTATCACTGAACCCAAGCGGTGTTTGTCCGATCTTTCACCACCTCTCCAATCCCTGGTCCTGAAAGCCCAACCGACACTTGGGACCAGGTTGGGTTTATCCCTCCTCCAATGAGCCCCAAAGGTCGTATTCGGGGgaagtttgtctttttttccgcCACACTAATGATCCAGATCAGCCTTTGCAGTAATTGTTTGCTGTCTGGGATATTCCACCTGGGGTTgagtgtaaaacatttaatgaggATGTTCCTGCTGCCTCCCTGAGCTGCCAAACCCGTTACTTGTACACAATGAGTTCGCTGCAGAGTGGGGCTGTTCCGCATGTCATTTCTTTCAATTCATAGCGGCACTTTAGCAGCTGCACAAGTGTCTTAAACTTGCACAAACTTAAGAAGCTTCAGGTTGAGGATATGAGATTCATACACCTCTGTCTAAAGTGCCTCTTCATATCACAGCAGTGTTATCTTTCCCACATGTGCCCATCTCCAGGGCTGCACTGTATTCAATAAGGAGTCTTGACCAAGTCTGAGCCCTGCATCGCAAGCTCAGTGTCCGAGAGGAAGAAAAGTATTAGTCTTTATAGACGTGCGCCTGTTCTTTACCAAGTCTCTTAAACCATTCCAGTCTGTGGTTGCTgtagcatttcattttgaatttgtcatacagattttatatatatatatatatatatatataactgtggCAAATATCTCATGGAGGTCTTTATCCAGAAATTGATTAATAAAGGCTGATGCATGTATGTCTTTTTAATTGCTAATTAAAGCGCACACCCAGCTGCCAGTCTGTTCAAAGCAGTGCATTTTAAACTAGGCTCCTCAGTATGGCAGTCATGTGTATAAACCTACATTGCGTTAGTGTCAGTTCAGTAGAATAGGTTATTGTAACTTTGTTCCAGCAGGTTTGCCTGACTTTTAAAACCGTAAACTGCTTGAACGTGTTAAAACAGTCCAACGAATCGGGAAGGTGTGCATCACAAAAGCTGGGCAGACATCCGCACAAAGTCCAGTACGGGGAGGCTGGGTGAGCTTTCACCGAGCTGGACCCCAGTCTGAgcacatttatttcacttcCTTCCCCTAGCTTCCATACAGACGCTCTTCCTCCACGACCTATCGTGGCTGCGGAggaatatcatttttttataatgttagaagatttataaatgtatttttctattgtaatgctttactttgttttgtaaataatgtgttaaaactagcaatagatttgtatacaataaaacaacacctGTTTATACAAA

Function

symbol description
tspan14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN14 (tetraspanin 14).

NR:

description
PREDICTED: tetraspanin-14

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17296 TSPAN14; tetraspanin-14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003243 True 2948 mRNA 0.48 9 15288624 15301140

Neighbor

gene id symbol gene type direction distance location
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding upstream 4082 15268221 ~ 15284542 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding upstream 21033 15266121 ~ 15267591 (+)
AMCG00003236 NA coding upstream 38220 15240501 ~ 15250404 (+)
AMCG00003233 NA coding upstream 72210 15204627 ~ 15216414 (+)
AMCG00003238 LOC107736286 coding upstream 110409 15174130 ~ 15178215 (+)
AMCG00003247 NA coding downstream 585976 15887116 ~ 15891866 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 626628 15927768 ~ 15931031 (+)
AMCG00003249 LOC105010526,LOC106607942 coding downstream 670655 15971795 ~ 15992523 (+)
AMCG00003253 NA coding downstream 1123746 16424886 ~ 16448261 (+)
AMCG00003260 NA coding downstream 1289627 16590767 ~ 16610586 (+)
G141592 NA non-coding upstream 33780 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 71073 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 98279 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 102299 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 779785 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 1497819 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1731285 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2216580 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 2402032 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 2411520 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 683076 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 988631 14283850 ~ 14299993 (+)
G141331 NA other upstream 1103981 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1157349 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1545081 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1163154 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1226049 16527189 ~ 16559206 (+)
G141962 NA other downstream 2375139 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2420104 17721244 ~ 17725381 (+)
G142078 NA other downstream 3287434 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location