AMCG00003247


Basic Information

Item Value
gene id AMCG00003247
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15887116 ~ 15891866 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003247
GCTGAACTTTGGGCAACTTCAGTCCATTCCCGGCAGGATATAAAGTTAAATCCCCACACGCAGTTTATTCAACcacaactgttttttaaatagaagTGCTTCACACAAGTGTTACAACTGCTAAAGGAAAGCATGGCTCTAAAGGAGATCACTGGGTTGTTGGTTTGCATCTTCTTATCAAAAGTTTTCACTTCACCTGCGGACTGCCCACCCACTTCCACAGATTATGAAAGCCTGTCTGCAACACTGAAGAATTtcaatgaatgttttaaatcGGACACATGGAAGAGGAAAGAGATTGATTCTTTCCTGGGCACCCTGAAAACAGCTACTGATCTACTACAAATAGAGCAAGAAAAAAGTTGTAAGAACTTCACTCCGGAAGAGTGCCCTGTCCCGCAGGTGCCCAGTGGGGGAGGCCTGCTGTGTCTCACCCTAAACAACACGCGCTTCTGCAAACCCATGTGCAATCAGGGCTATGACTTTTCATTCTTAAGAAGAAGCCGTCTGTACGAAGAATGTGGACATCTTAGCAAACAATGGACCACTCAGTATGTCGGAGGAAACACACTGGCAGTCTGTCAAAAGTCCGATACTCAAATCTCCGGAGCCAAAGGCAGCTATTTTCCAAAGGATCAAGACTGCCGGAAAATGACATTTGATAACGAGGCCCAGGAGAAGATGATAAAAAGCTTTATTGATGAACTAACTTTGAGCGGTATCAATGGGATGCATTTGGACAAATATGACTGCCTAATCTGTGGATAATTTAGGAGCCGCTGGCCAAAAACATAAGCCGAATGAATCCAGTCCATAGGGCATGTTCTGCTTTCTAACACATAAAGCCTGATAAAGCAAGGGCAAAATCAGAAGTGggctgaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003247 True 883 mRNA 0.44 6 15887116 15891866

Neighbor

gene id symbol gene type direction distance location
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding upstream 585976 15288624 ~ 15301140 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding upstream 602574 15268221 ~ 15284542 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding upstream 619525 15266121 ~ 15267591 (+)
AMCG00003236 NA coding upstream 636712 15240501 ~ 15250404 (+)
AMCG00003233 NA coding upstream 670702 15204627 ~ 15216414 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 35902 15927768 ~ 15931031 (+)
AMCG00003249 LOC105010526,LOC106607942 coding downstream 79929 15971795 ~ 15992523 (+)
AMCG00003253 NA coding downstream 533020 16424886 ~ 16448261 (+)
AMCG00003260 NA coding downstream 698901 16590767 ~ 16610586 (+)
AMCG00003258 LOC107689962 coding downstream 733584 16625450 ~ 16653567 (+)
G141592 NA non-coding upstream 632272 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 669565 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 696771 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 700791 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 1378277 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 907093 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1140559 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 1625854 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 1811306 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 1820794 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 1281568 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 1587123 14283850 ~ 14299993 (+)
G141331 NA other upstream 1702473 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1755841 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 2143573 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 572428 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 635323 16527189 ~ 16559206 (+)
G141962 NA other downstream 1784413 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 1829378 17721244 ~ 17725381 (+)
G142078 NA other downstream 2696708 18588574 ~ 18692204 (+)

Expression


Co-expression Network