AMCG00003248 (gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414)


Basic Information

Item Value
gene id AMCG00003248
gene name gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15927768 ~ 15931031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003248
GTACTGTGGTCCGCAGACGTGCATGTGTTGTCTGGTGCTAACCGGCTGGACTGTGTCAAGGCCAGCGAGCAGTGTCTGAAGGAGCAGGGCTGCAGCTCAAAGTACCGGACGATGAGGCAGTGCGTTGCGGGGAAGGAGAGCAACTTCAGTATGGTGTCAGGACTGGAAGCCAAGGACGAGTGCCGGATTGCCATGGATGCCCTCAAACAAAGCCCCCTGTACAACTGCAGGTGTAAGCGGGGCATGAAGAAGGAAAAGAACTGCTTGCGCATATATTGGAGCATTTACCAGAGTTTACAGGGAAACGATTTACTAGAAGATTCTCCATATGAGCCAGTGAACAACAGGCTTTCTGATATATTCCGTTTAGCTCCCATCATATCAGattat

Function

symbol description
gfra1a Enables MAP kinase kinase kinase activity. Acts upstream of or within enteric nervous system development and protein-containing complex assembly. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; pleuroperitoneal region; presumptive enteric nervous system; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).

NR:

description
PREDICTED: GDNF family receptor alpha-1-like

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003248 True 390 mRNA 0.51 3 15927768 15931031

Neighbor

gene id symbol gene type direction distance location
AMCG00003247 NA coding upstream 35902 15887116 ~ 15891866 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding upstream 626628 15288624 ~ 15301140 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding upstream 643226 15268221 ~ 15284542 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding upstream 660177 15266121 ~ 15267591 (+)
AMCG00003236 NA coding upstream 677364 15240501 ~ 15250404 (+)
AMCG00003249 LOC105010526,LOC106607942 coding downstream 40764 15971795 ~ 15992523 (+)
AMCG00003253 NA coding downstream 493855 16424886 ~ 16448261 (+)
AMCG00003260 NA coding downstream 659736 16590767 ~ 16610586 (+)
AMCG00003258 LOC107689962 coding downstream 694419 16625450 ~ 16653567 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding downstream 734403 16665434 ~ 16671432 (+)
G141592 NA non-coding upstream 672924 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 710217 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 737423 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 741443 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 1418929 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 867928 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1101394 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 1586689 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 1772141 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 1781629 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 1322220 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 1627775 14283850 ~ 14299993 (+)
G141331 NA other upstream 1743125 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1796493 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 2184225 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 533263 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 596158 16527189 ~ 16559206 (+)
G141962 NA other downstream 1745248 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 1790213 17721244 ~ 17725381 (+)
G142078 NA other downstream 2657543 18588574 ~ 18692204 (+)

Expression


Co-expression Network