AMCG00003249 (LOC105010526,LOC106607942)


Basic Information

Item Value
gene id AMCG00003249
gene name LOC105010526,LOC106607942
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15971795 ~ 15992523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003249
ATTGGaattcagattaattaaatgcagCTTTTTACATGCTCATGCCAGCTTAGTTTCCCAAATGCCCAAATGCCAACTGACCCCTTTCCTTTGCTGTTACAGGGGAGCCGGCCGTCACGAAGGAGAACAACTGCCTGAATGCCGCCAAGGCCTGCAACCTGAACGACACCTGTAAGAAGTACCGCTCGGCCTACATCAGCCCCTGCACCAGCCGTGTCTCCACGGCCGAGGTGTGCAACAAGCGCAAGTGTCACAAGGCCCTGCGTCAATTCTTCGACAAAGTGCCTCCCAAACACAGCTACGGGATGCTCTTCTGCTCCTGCCCCCCCGTGGACCAGTCGGCGTGCAGCGAGCGCCGGCGGCAGACCATCGTGCCCGTGTGCTCGTACGAGGACAAGGAAAAGCCGAACTGCTTGTCTCTGCAAGTGCTGTGCAAGACGAATTACATCTGCAGGTCACGTCTTGCAGATTTCTTCACAAACTGCCAGCCGGAGCAGCGCTCTGTCAGCGGCTGTCTGAAGGAGAACTATGCCGACTGTCTGCTGTCCTACTCAGGGCTCATTGGCACGGTCATGACCCCAAACTACCTGCGATCCACCCAGATCAGTGTGTCCCCGTGGTGCGACTGCAGCAGCAGCGGGAACAACAAAGAGGAGTGTGACAAGTTTGTGGAGTTCTTCACCAACAACACATGCCTGCGGAATGCTATTCAGGCCTTTGGGAATGGCACTGACGTGGGCGTGTGGCAGCCTATGACCCCTGTCCAGACGACCACTTCCACCACCACACCATCCAACAAGGCCAAGTCCTCCAACAGTCTGGATTCCTTCACTCACAGCAATGAGATCAACACCCCAGACGAGGTCTACCCCTTCTGCAGCAATTTGCAGGCCCAGACACTGAAATCGAATATATCAACCCAAGTCGCCCTGTGTGTGGATCCTCAAATTGACGACCCAAATACAAATGCCATTTCCAAGCCCTCATCCAGCACGCCGACAGCTTCCCCTCCCAGCAGCTTGGTCCTCACTCTGGTTTCAGTGGTCTGCTCAACCGTCCTGGCTCTCAACCCCTCTGAAAAATTGTAGCCAAACACGCAACCGgacttgtaaaaaaaaaagaaaaaaaaaagaaaaaataagaatatgttCCCAGTcttctgctgtattttgtttttctttaattctggTTCTAGAGGCATTGTTGAGGCTCCATTTTGAAGTGATTTCTTTgtaactggatttttttttgttatgcttttcttttttaaaggaagCTTCTTGTGTTGTTTAGGGGCGATGCAGTGCTACATTCCAGACCGAAATGGCTTGTGGGCATTTGGAGTTTTTcagaggaaagagaaaatacTTCAAAACAAAAGGGGAGAtaatggggagggagggagggagagggaggtttTCATCATTATTGTACAGTATCTTGGTTTAAATCCCTGTGCGGGAAGGAGGCGACATTTTCTTGTTGAGAATCTTGTTTGTGGTGTGCATATGTAAAATGTCTATTTTCCGAAACTGACGAGGGACGGACGTTCGTGCCGGGGTTGCTGGGACAACTTGAGGCCCAAGCAGGGTGCAGACGGGCTGGAGCCACAGAGAGGAGACTTCCTGAGGCTTTACCCTTTTTGTACTGGATGGATTGTTACAGAtgcttaaaaggaaaaaaaaaaccttttaccTGTACTGGTGTTCGCTCACTGTTCTTGTTCTCGTACGTGGTTTTCCTTCTGCTGCAGGTGCCCTTTCTGTCTTATACATCTGCTGATCCGGCTTGTATTTCTCCTCCATTTTTGATGACCACAACAAGAGTGCACATTGCagttgaaaggttttattttatttttttacaataagcTTCAATTTAGCAAGCCTTTATACTTGCAGTCGCACTAACCACCTGTGTATGTAAAACTTAAAATTCAAAGTTGTGTAAAATAGCTCCTCATAACAAGGATGTTCCgaagttacttttttttttggttattttatttggattttaatCCTTTTCTCTTTGTAGTCAGCCCATTCCTAATCAGATGGCAGATCATGATAATTGGCTGTAATGGtcatgcatttaatgtattataatctGCTCAGTGTTATTAAAAGTGGCACGCATACTGTTACAGttcaaaaaaggaaattaaagggAATTTTTTAATGATAGTATGTTATCTGCAGATTGAACTGAAGTTAAAAAGTGCTGGCAATGTCTGCTTgaaaaagtacagtaagtgctgTGCTGTAACAGTTTCAGAGAACATTCAATCGCATATCTGATTCAATCAGACATGGATTAATATAATGGCCACTTTATATAAGTGTTTCTCTAACTGCACATAATCACAAAATACAGCCAGACTGCTAATTCAACTGCTCTATTTAATGCCAGATTACATTTACAATGTGTAAAGGAAACTGTcacttgtgttttgttgtttttggtctGTAAAGCAGAACCGTGTCAAGCTACGCTGGGGATCAAAGAATCAACTATAATTCTTGTGTGAGTTTTTGTAATTTCGTAAAAGTGctgctaagaaaaaaaatcaccttcGCAACCGTAGTGAACATCATATGACACTCATGTCTATTGACAGAAAGAGGTGGGGGTGTTtaagtaattgtaattaatcaCATGAGAATTTAccattaatcaattaagaacATTTGATCCAAAACCGATGATTTACAGAGAATAAAATTAATCGCAAACAaagggattttatatataagCTTGTGCGGAAAGGTGACTCCTACAATGCAATGCACATAGTTTACTGTCGTTTGTACTGTGGTGCTTTAGTTTTTCAGGCTTTAcggaaacaaatacatacatatatgtatgcatgtgtgtgtgtatatatatatatatatatatatatatatatatatgccacgTTCCAGGATAACATGTTTGGATCACAAGCCACTATAATATACTAATGTACCAAACTCAAGACAAGAAAACATCATTGTTAAAGCCACTAATAATGATGGAATTCAGTAAATGGGACTATACGCTTTCTTTCAAAGATGTAAAAACTGTTGACAGTGTCGCTTTCAACACATTGGAGAATGTGTTTTCTTTCGCTGATATaccacattatatttttctccaGAGTCATATGTAAGTTTTCAGACTGAAGTGAAAAGTATAAACCAGATAACTTACAGAAgactttttttattactattattgtcaCAGTTGACCTATCTTAAGAAAAGTATCTTACAGTATTTCAGCTGTGGCCAgaatataacattgttttatggtaaacacttattttatttttctaattgtatttctgttgaCATCAGTGTAATTTTCCTCTTTGATTACTTCCTCCCACGCAAACATGCAGCACAgaagtgaatgaatgaaatattaataaatacaatacaaataaacctcGCATGGATgacaattaatgtaattaattctgGTTTATTCTGTTGGAatctgaaagtatttaattgaCGATTTAGAAGGGGCTCGTTAGCAGACAGCCACGCAAATTGTACCAATTGTCCTATTCACGGGAGCAGAAGCAGTCTGTTTAGGACTGGGATTTGGATCGTCTCTGTTGAATGCTCTGACAGGAATGACAGTCTGAGACACCAGAATGTGCTGCAAGGAGGCTGGGTTTGGGAACATGCAATCACAAAACGCAGTGTAATgacacattcattatttgtaatCATCCAATCCATACTACTttggttgtaaaaaaaaaaaaaaaaaaaaaaaatttataCTTATAAAAGATCCTTCAGCTATACACCACGTTACTACTTAGCTTGTGAAAATGTACAACCTATTCTACAAAAAAgatcattaaaaa

Function

NR:

description
PREDICTED: GDNF family receptor alpha-1 isoform X2

GO: NA

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003249 True 3862 mRNA 0.41 6 15971795 15992523

Neighbor

gene id symbol gene type direction distance location
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding upstream 40764 15927768 ~ 15931031 (+)
AMCG00003247 NA coding upstream 79929 15887116 ~ 15891866 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding upstream 670655 15288624 ~ 15301140 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding upstream 687253 15268221 ~ 15284542 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding upstream 704204 15266121 ~ 15267591 (+)
AMCG00003253 NA coding downstream 432363 16424886 ~ 16448261 (+)
AMCG00003260 NA coding downstream 598244 16590767 ~ 16610586 (+)
AMCG00003258 LOC107689962 coding downstream 632927 16625450 ~ 16653567 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding downstream 672911 16665434 ~ 16671432 (+)
AMCG00003261 NA coding downstream 718749 16711272 ~ 16722062 (+)
G141592 NA non-coding upstream 716951 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 754244 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 781450 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 785470 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 1462956 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 806436 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1039902 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 1525197 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 1710649 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 1720137 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 1366247 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 1671802 14283850 ~ 14299993 (+)
G141331 NA other upstream 1787152 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1840520 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 2228252 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 471771 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 534666 16527189 ~ 16559206 (+)
G141962 NA other downstream 1683756 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 1728721 17721244 ~ 17725381 (+)
G142078 NA other downstream 2596051 18588574 ~ 18692204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_03194041_03223541 GFRA1B coding CI01000055 null 3193037 ~ 3223561 (+)