AMCG00003253


Basic Information

Item Value
gene id AMCG00003253
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16424886 ~ 16448261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003253
GCCCATGCGCAGGACACGAACCACCCTGCCGAGAAGCCGGTGATCCACTGCCACAAATGCGGGGAGCCATGCAAAGGAGAGGTGCTGAGAGTGcagtccaagcacttccacATCAAGTGCTTCACCTGCAAAGTGTGCGGCTGTGACCTGGCCCAGGGGGGCTTCTTCATGAAGAACGGGGATTACCTGTGCACCCTGGACTATCAACGCCTACACGGCACCCGCTGTAACGGCTGTGGGGACTTCGTGGAGGGAGAGGTCGTCACGGCACTGGGGAAGACATACCACCCCACCTGCTTTGTCTGCACCATCTGCAAACGACCGTTTCCCGCAGGAGACCGTGTTACCTTCAATGGGAAGGACTGCCTGTGCCAGCGCTGTGTCCAACCAATGTCTTCCAGTCCCAAGGATATCAGCAGCTCCAGCAACTGTGCGGGCTGTGGCAGAGACATCAAGAACGGGCAGGCGCTCCTGGCCCTGGAGAGACAGTGGCACCTGGGCTGCTTCAAGTGCAAGGCCTGTGGCAAGGTCCTGACTGGAGAGTACATCAGCAAGGATGGTGCCCCGTACTGTGAAAAGGATTATCAGATTCACTTTGGAGTCAAGTGTGAGGCCTGTCACCAGTTCATCACTGGGAAGGTGCTAGAGGTAGGTGAACATCTCCTTCAGTCTTCAGAAAACTGGGAAAGCTTCCACTGCCTGGGAGAGATGGTGTCTTACAGTAATACAGATAGTCCAAactaa

Function

GO: NA

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003253 True 744 mRNA 0.56 5 16424886 16448261

Neighbor

gene id symbol gene type direction distance location
AMCG00003249 LOC105010526,LOC106607942 coding upstream 432363 15971795 ~ 15992523 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding upstream 493855 15927768 ~ 15931031 (+)
AMCG00003247 NA coding upstream 533020 15887116 ~ 15891866 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding upstream 1123746 15288624 ~ 15301140 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding upstream 1140344 15268221 ~ 15284542 (+)
AMCG00003260 NA coding downstream 142506 16590767 ~ 16610586 (+)
AMCG00003258 LOC107689962 coding downstream 177189 16625450 ~ 16653567 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding downstream 217173 16665434 ~ 16671432 (+)
AMCG00003261 NA coding downstream 263011 16711272 ~ 16722062 (+)
AMCG00003262 NA coding downstream 296963 16745224 ~ 16748526 (+)
G141592 NA non-coding upstream 1170042 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 1207335 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 1234541 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 1238561 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 1916047 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 350698 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 584164 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 1069459 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 1254911 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 1264399 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 1819338 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 2124893 14283850 ~ 14299993 (+)
G141331 NA other upstream 2240243 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 2293611 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 2681343 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 16033 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 78928 16527189 ~ 16559206 (+)
G141962 NA other downstream 1228018 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 1272983 17721244 ~ 17725381 (+)
G142078 NA other downstream 2140313 18588574 ~ 18692204 (+)

Expression


Co-expression Network