AMCG00003254 (LOC106590870,LOC107580847)


Basic Information

Item Value
gene id AMCG00003254
gene name LOC106590870,LOC107580847
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16331807 ~ 16341749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003254
CGCCAATTAGGATTGGCAACCATGCACCATGATTTCAAGCCCAACAGGAGAGTTGATCCAGTCTCAATTTCTAAGAAACGATTGATTGTTTGAATAAATGTGCTTGCCTCTTTTAACTATTCAGTTTCCATTTCATGAGCATTTATTTATGAGCGTGTCGTCATCAAACCGCGTCGTGTCAACAGAAAGCATGGCTGGAAGTGTTGCAAGCGCCGCTGCTGCCCAGAAAGCTGCAAAATTGCACTCTCTGAATGGACTATTTGCAATTTATAAGAAACAAGGACCGACGTCGGCGGATGTATTAAATACACTGAAGGACAAGCTTTTAAAAGAGGCTGATCTGAAACAGAACTccaagaagaggaaaaaacaaatcctgaagATCGGACATGGGGGGACTCTGGACAGCTCAGCTTCGGGGGTGCTAGTGGTTGGTATTGGAAAGGGAACAAAGATGCTTGGTACTATGCTGGCAGGTTCAAAGaaATACACCACAGTCGGTGAATTGGGCAAAGCAACAGACACTCTGGATGCCACTGGGACCGTCACACAGGAAAAGGCATACGATCACATCACAAAGGAGGAATTTGAAGAGAAACTGAAGAAATTCACTGGAAACATAATGCAGGTTCCTCCACTATACTCTGCGCTGAAGAAAGATGGCCAGAGGTTGTCCGTTCTGCTAAAGAGAGGCCATGAAGTGGAGGCCAAGCCAGCCAGACCAGTGACCGTTTACAACCTCTCCCTGACGGACTTCAGCCCTCCTCTCTTCACGATCGatgTCGAATGTGGCGGCGGGTTTTACGTCAGGAGCTTGGTGGATGATATTGGCAAAGAGCTCTCCTCCTGCGCCCACGTAAAGGAGCTGGTGAGAACCAAGCAGGGCGCCTTCACACTGGACGAGCACGTCTTGCAGGAGGACAGCTGGACCATCGACCGAGTGGCAGAGTCCATCCAGGAGTGTGCCCACCTCCTCAGCCCAGAGCCCGCGTTCAAGAAACCCAGAACGGACCCGTGTCACACATCGGACGCTGGCAACGGAGAAGCAGGCGATGAGAAGGAGCAGTCGTAGCTCCCGAGCCCTGCCCGGCCCGCACAACCTCCGAGGAACAAACCCTGGAGGCGTCTCGGATGGGTTTGTGATGCAGGCAGCAACGAGGATTCATAAGATCAGGATTCTGAGCGCTTTGCTAAAGCATGTCTGCTCGAGGCTAGTCAATCCTTCAACAAGCTCTATGACTTTAGTAAAAGCTCaaatttgtatgttgtttttttaagcactgCATAGGAGTTATAAGGAAGCTGAAATAAGACATACCAGAGAGGCAACATTGTGCCAACCAGTTCAGGAAACCTGTAAAGCTGTGATGAAGTTTAACTATTCCCTTTAAGTTTGTTAAAAAACCTGTTTGGTTGTCCTTTATTCAGAGGGTGACTAAAGTGCAAGTTCAGGGAAACGCAAGAACCAGTGTAAGCATCAGTCACCCTTCATGAATCTTAACGGTGAAGTCTGACCTTATTTAAAACCCATAGATAAGAGGAACTAATCTCCCTCTTTAAACCTCCTCTTTCCTTTAAATGATTCAATCAGAATGTCGCACAAATTGTTTCTTTGTTACGTTTAATGTGGAAAACTGAGATTTGAAGCATTTTCCAGAATGTGTGTGTagacatttagattttttatttttttttgtgtaggtTTAGGCAATGAAAATAAGCTTTTTATGATCTGAAAATAGCGATTGTCAGCAGGGTTACTGTACAAGTACTTATTAAAATGTGCTAACTGCAGgctttttattgtgcttttgcaAACACTACCAGCACTGCACAACCCCCTATAATTGACTTGGA

Function

NR:

description
PREDICTED: probable tRNA pseudouridine synthase 1, partial

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K03177 truB, PUS4, TRUB1; tRNA pseudouridine55 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003254 True 1857 mRNA 0.46 9 16331807 16341749

Neighbor

gene id symbol gene type direction distance location
AMCG00003250 LOC107689951 coding downstream 64415 16237412 ~ 16267392 (-)
AMCG00003251 NA coding downstream 111544 16211441 ~ 16220263 (-)
AMCG00003252 NA coding downstream 414260 15900357 ~ 15917547 (-)
AMCG00003246 NA coding downstream 758320 15564828 ~ 15573487 (-)
AMCG00003245 NA coding downstream 855409 15446986 ~ 15476398 (-)
AMCG00003255 NA coding upstream 5675 16347424 ~ 16365986 (-)
AMCG00003274 NA coding upstream 225022 16566771 ~ 16590833 (-)
AMCG00003277 NA coding upstream 273571 16615320 ~ 16620560 (-)
AMCG00003276 NA coding upstream 322991 16664740 ~ 16665930 (-)
AMCG00003266 NA coding upstream 339304 16681053 ~ 16710859 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 270769 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 339129 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1114000 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 1159359 15163954 ~ 15172448 (-)
G141569 NA non-coding downstream 1177437 15154016 ~ 15154370 (-)
G141740 NA non-coding upstream 153089 16494838 ~ 16498441 (-)
G141795 NA non-coding upstream 311942 16653691 ~ 16656167 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 573189 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 595885 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1945254 18287003 ~ 18287212 (-)
AMCG00003231 NA other downstream 1190988 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1657387 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 2901483 13407272 ~ 13430324 (-)
G141004 NA other downstream 3452386 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3476466 12851021 ~ 12855341 (-)
G141826 NA other upstream 406312 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 3201888 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3460330 19802079 ~ 19876762 (-)

Expression


Co-expression Network