AMCG00003255


Basic Information

Item Value
gene id AMCG00003255
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16347424 ~ 16365986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003255
ATGCTAGGGGGCGACAGAGCGGGCCTCCTTCGCGCTCCCCCTAGCGGCAGGACGGTGCGCTGCGCCGCCGGAGTGCCACGGTGGTCGCTTTATGAAACCTCCAATCTGGATCGCGGCGGGCACCACAGGAAGAAGATAGAGGAGTTCTCTAGGTCTTCTCGGGAGAAGCTGCTCCAGTCCAAGCACAAGATGTTCTCCAAATTCACCTCCATCCTCCAGCACGCAGTGGAGGCGCTTGCTCCTTCACTACCTTTGCAGGAGGACTTTGTGTACCACTGGAAAGCTATAACGCATTATTATATTGAGACATCAGATGATAAAGCTCCAGTGACAGACACAAACATTCCTTCGCACCTGGAGCAGATGCTTGACATCCTGATTCAGGAGGAGAATGAGCGGGAATCGGGAGAGACTGGGCCCTGTATGGAGTATCTCCTCCACCACAAGATCCTGGAGACGCTGTACACACTGGGCAAAGCTGACTGCCCTCCAGGAATGAAACAGCAGGTCCTGGGTTTTTATACCAAACTATTGGGACGGATTCGCCAGCCGCTCCTCCCACATATCAACGTACACAGACCGGTGCAGAAACTAATCCGACTTTGTGGCGAAGTCCTCGCAGCTCCTACAGAAAACGAGGAGATACAGTTTCTGTGCATTGTGTGCTCCAAGCTGAAGCAAGACCCGTATCTCGTCAGCTTCTTCCTAGAGAACAAGGTCAAAGTCTCAGCTGCCCGAGGGCTTGCTGCAGAAGGCTTGCTGGGGAATGCTGAAGATATGAAAAGCGCCTCCAGTCCAGACACTGGCCAGGCCCAGGCATCTGTGGGTCCAGGTCTGGAGAGCGCCTCCGAGGGCCAGTCTTCACAGCAGGCCGACAGGGCTGCTTTCTCGTTGAATCGGCTAGCCATCCCTTCCCAGGCTGAGGCGTCTGCCAACCACCCCAGCCACAACTACAACCTCGTCAACTCCTTGCTCAATCTCACAAAGAGCCCTGACGGGCGGATAGTGGTGAAGGCCTGTGAAGGTCTGATGTTGTTAGTAAGCCTGCCCGAGCCAGCAGCCGCCAAATGTCTGACGGAGAACACAGCCCTGTGCGACCTGCTGACCGAGAGGTTGACCGTCTTCTACAGAGCCCTGCCACAGTCCATGGATCCCCTGGACATTGAGACCGTGGAGTCAGTCAACTGGGGCCTGGATGCTTACAACCTTAAAGAAGATGCAACGGCGTTCCCTGGGAAGCGAGCACTAATCTCCTTCCTGTCCTGGCTGGATTACTGCGATCAGCTTATCAAAGAAGCACAAAAGACCGCAGCTCTGCAACTGGCGAGATCAGTGCGGGAGAGGTTTTTTGTCTCTGTTATGGAGCCTCAGTTAATGCAGACGTCAGAAATAGGAATATTGACCTCGACCGCTCTCCTAAACCGCATCATCCGTCAGAAGAGAGAGCCAGAGACCCTGGCGGACATCAACAGACACCCTCTACGCCATCGGCTCATTGAGCACTGCGATCACCTGTCTGACGAGATCAGTATTATGACCCTGCGCATGTTCGAACACCTCTTGCAAAAACCCAATGAGCACATAATTTACAACCTGGTGCTGCGCAACATTGAGGAGAGGAACTACGCTGAGTATAAACCCCCCTGTGCCGAGGACAAGGACGTGGTGGAGAACGGACAGATACCGGGAGCAGTGGACCTAGAGGAAGACCCGTTGTTCACTGACATGTCACCTGACAACCGACTGTCGAGTCCTGATTGGCTGAGTGTCTCGCCCCCTCAGACTCCAGACCACGTGAAGTCTGATGGGAAGACGGAGGTGCACAAGATAGTGAACAGTTTCCTTTGTTTAGTCCCGGATGAGGCCAAATCCTCGTACCACGTGGAAGGCACAGGCTATGACACCTACCTcagagatgcacacagacagTTTCGTGATTACTGCGCTATCTGCATGAGATGGGACTGGCCAGGGGTCCCCAGGCCTTTTGAGAAATGCAATTTGGATGCCAGCTTCTTTGAAGGACATTTCCTCAAGGTTCTGTTTGATAGAATGGGGAGAATCCTCGATCAGCCCTACGATGTCAATTTACAAGTGACGTCAGTGTTGTCAAAACTGTCCTTGTTTCCCCACCCACACATACATGAGTACCTTTTAGATCCCTACATCAACCTGGCCCCAGGCTGCAGATCTCTCTTCTCTGTCATTGTCAGGGTGGTTGGTGACCTGATGTTGAGGATCCAGCGCATTCCGGATTTCACGCCCAAACTTCTGCTGGTCAGAAAACGATTGCTGGGGATGGAGCCGGAAGGGCCTGGCATTGACCACATGACCTTGTTGGAGGGCGTGATCGTCCTGGAGGAGTTCTGTAAGGAGTTGGCCGCCATAGCATTCGTGAAGTTCCATGCCTCCACTACACCATAACCCAGACCACCGCGCTGTCCTGCTGTGAGCCTCGCAGACTCCCAGCCAGACACTGGGAAGACTTTGGCCGCAGCAGTGGAAGAATCCATCCTCTGTTGAGACCGGGGGGGCGCGACGGGCCGCCATTAACTTTGGCATCAGCGCAAGGTCACCTTATTGAAACACTGCAGATCTCTGGAGGGCTCAGCGGATGCGTCTATCATCCGATCTTCTGGGTCAAAGGTCGCGTCCATCAAACTCTTGTATCTGGTACAGCGGGAAGTCACACGCAGCCAATAGGATGAAGAAGGGAGTTGGTTTTAAAACTAAttcaagaagagaaaaaaactaaattggggtttacaattttaattttctttattttcaggtgttttatttttacccaaGTTTTAAGATGGTCAAAACTAATCAAGTTGaattcagtttttacatttttttctgctacACAATTCGTGGGTCTCTATTTATGATTGAACAGGACGGATTAACAGAAATCTAAGGCCTGTAAGCATTTATGCCTTAGTACACATTGCCTTTCTGTTCTGAAGCCTGGAGACCATTTTTCGGTAGAGTTTTACTTTAATCAGCAGTTTTATGTGTCAGATGTTTAGGACGACGTTTCGGAACTGGCCAGAATACAAAAGTAAAGAGTTACAACCTATTTTAGCATCTCAAAATTACAGCAGCCTATCAAGGTAACACTGCAGCCTAAAAAACGTAACACAGAATAATTACAGGAAAGGTTTGGAAATGATGATTGATTTTGTAGGGGTCCGCAAGCCTGTTTTAATTTGACATCCTTTTAATTCAACAACTGCAGTGCCTTGTAGAACttcaatctgtttttcttttgaagatccaaatattattttgtgtcgTTAAGGAATATACATGGGGTGCAGTAATTATAACATTGAACATTAAAGATGCAGCTTTTAATATACTTCCCAGAATCCTTAGCTTCATGCTCATTTCTCCATCCAATTGCACTTTTTTATGCTTGTGATCCCTAGTCTGTGAtagaaaagtggaaaaatacGATGAATATAAAAACCTGAGTTATTGTCCCAGTCTCTGTCTTTCCGTTGGTCTTtgaaacagtgttttaaaaaaacggTCTTTGTGATTTAGTTTGATTTGTATGCTTAAATAAACCATTGTGTTGGCTGTGCCTTAGAAGTGGGCATGATataagtattatattttaagtgttttactCTGTTTTaagtaagaatgttttatttatagcaGTTGAACAGGCACTGCtttgtgaacaaaataatgtgggACATACATGTAAAGCCATCCACactatcattttgttttgttttttatttttgaagtggtGACATTTTTCCTTAAGCTGTTCAGTTGTATGGATTTTGACAGcgttttagtgttttgtttaaaaggaatatttttaaaaactgccGATACAAGTTACATGCTATGACGAACGAGCTGACTGCGATTACTTGAACGTTGAAAGGAGCGGGGTTCTGATGCCTACAGAACACAGGGagttttaaaagtttgtgttcTAGTATTATTTCTAACCGATTAGTCAATTTATGCAAGTCTAAATGCAAGTCTCTCCTGTCTCGCACGACGAACgtgaataaatacacattccATTTGGTGTGAATAGACACGATGTCAGTCCAGTATTGGAAATGCTCTTAAACCTGCTATCTGGAGCATGTGGATTATTTTGTGGTGTACAGTAACTGAGGGTTTGTTTTATCCTGTATTAGAGTGCAAACGAAAGGTTTGTCCCATTACGATATCTGAGCATTTTATGCAAGTGTATGAAAAAGAATTGCACATAGATTCCAGTgtcttatttaatttctgtaaccTGTTTCTTACTCCCAACATGTAATGggtttctgtctgtctatacAGTGCATACTTTTCATGAACCAAATGTTTTAACAAAGGGTTGTAACTTACCAGAGTGACATCATTGCTTAAGCcagaaaataactttttttattcatgcaCATTTTTATACCAACAGAGTACACTGTATAGCTTTGGAacattgtgtatatatgtaaaataaccTTACTAGCAAGCGCCCATGAGGAGAtcttataaaatattgtaaatgcatgCGTACACATGGTTCACAAGACCCTAATTTATTTGAGAATTTCATGGCAAAAACTGTGTCAGCACCTTTCCACCAAAATTAGCTAATCATCCTTTATTGTCGAGTTGAAACTTCTGTCATGATGCCTTACTTACTTAGCGCAGTCCCTTGGTGTTGTGATCATTTGATTTCTCAATTGTGATATAAACAGGGAAATGAGATTCCCAAATcagattttaaagcatttttcccctcccccacttaattgtatttgtgaatAAGTAtcccaaaaaaacacttttgactGTAGCAGCAGCTGTGAAAGTACATAGATCTTTTTAACGACAGGTGATGCATCACTGCTGCAATGCCAGCGAGTCGAACGACAGATGGCTACAGGTTCGGCCATTTTTATGTGTtgacagcattttaattttttcatcttACAATATAGATGTCGACCAATCACTGTCGATGAGTTTGAGACTCTTCTGTCCATGCCTTATATCATAAACACTTGGTCTGATTAACGACGCAGTACTTTTATGTCGTCGTTGAGGGACcataatgctttttttgttttgttttcccatacCCTATATGTTCCGTTAACATGTCCCTTTTCATAGGTCATGTCATTTTTACCATTGCAAAGAGTTCACCCCTTCTTTCGGCTAATAAATGATGGAAGGCTCATTGCTTGTGCTTCTGTCTTCCTCGTCCACACAGTAACACGTTGCACCTTTTCATTGTACTGCCTAAGCCAGGACATGTTGTACCTGTTTAGCTAGTGTGACTACCTTTGtaatcatgttatttattgttgctTGCTTCCCACTATTGCTGTTGTAAATGATCACTCTATTAATCATCCTCAGATACATTAAAAGACTGCATTCTAGAAGCCTCTTCTTTTTTCATGCTCCTTCCTGTGTCAATGAAGGTGAATCTGCTTGTTTGTAAATGGCAAGGCTGATGATTTGACCTTGATGTGGTGAAAGAAACCCAATCACGAGCAAGGAACATTGTGCATTGTGTCTAAGGTTTGCACATCACTAAGACCTTCCACAACCTTGAAATGGATCAAGGGAAAACCTCTATTTGTCGATTTTCCATTGCAATCCTGCCATCATGACCCTGGTTGTATCTTTCGGTTTGGGTGGATGGATCGGAGGGGCATTGTAATCGATTTTCCCAgtgcacaaatgcaaaaatgggTACGAAATgttaaggaaaacattttactttaatgaTTTGGTGTTAAGTTACACCTTTGATTATCAATACAGATTTGAAGATTGCAATAATGCTTCTAAAATGGTTGATCTTCTAAAATGGTCTCTCAGATCCTaatttgattattaataataataattataacctAAAGGCTGTGTtggatttatattttgaatttgaaaagtgAACTAGAAACCATATTGGGTGTTTGGATATTTCTCCTAAAAGAAATGGAGTTTGTCTACAAAGACAATTCCTTCACCGTGTTCCTGCAAGGTTTTTAAATGGAGAGTTTTATAGCTGGGATTTCTTAGCAGTTCAgctttgtaaaattaatataatcaaaCTGCCACATGCTTTGTGCAAATGGGAATCAGTGATATATCGTCTCCTAGGCTTTAGTTGGCAGTACGAAAAATATTGCCTTATTGCCTTGTATTATTGCTCTGAAAATGTTTGTgctttagttttgtatttggtCTGTATTACATCTTACCAACACTGCCAATAGTCCTGGAAGGGAATTTATAAACAGTACACTACAGACATCAGTACTAAGGCTGTATTATACACACTTGCTAACTCACATCCATTGTCGAATGATGGTGTACGTACATCATGTTTGTCTATATTGTGCAGATAGATTCATTTCAGGTAGGGGATTAATGAAGCATCTCTTCTGTCTGTAACTGCCATCTAGGTTCTTTACCTGTCCTATTTTGGTACTCTACTTTTGAAGCATTCttaatatgattaaataagTGAAAACTGTGAGGTCTTAAGATTGAATTACTTGTACTGCTGTACTACATGtattggaaatgttttaaaatccaaTAAAAGGTTTTCAGACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003255 True 6611 mRNA 0.43 19 16347424 16365986

Neighbor

gene id symbol gene type direction distance location
AMCG00003254 LOC106590870,LOC107580847 coding downstream 5675 16331807 ~ 16341749 (-)
AMCG00003250 LOC107689951 coding downstream 80032 16237412 ~ 16267392 (-)
AMCG00003251 NA coding downstream 127161 16211441 ~ 16220263 (-)
AMCG00003252 NA coding downstream 429877 15900357 ~ 15917547 (-)
AMCG00003246 NA coding downstream 773937 15564828 ~ 15573487 (-)
AMCG00003274 NA coding upstream 200785 16566771 ~ 16590833 (-)
AMCG00003277 NA coding upstream 249334 16615320 ~ 16620560 (-)
AMCG00003276 NA coding upstream 298754 16664740 ~ 16665930 (-)
AMCG00003266 NA coding upstream 315067 16681053 ~ 16710859 (-)
AMCG00003270 NA coding upstream 362928 16728914 ~ 16737927 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 286386 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 354746 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1129617 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 1174976 15163954 ~ 15172448 (-)
G141569 NA non-coding downstream 1193054 15154016 ~ 15154370 (-)
G141740 NA non-coding upstream 128852 16494838 ~ 16498441 (-)
G141795 NA non-coding upstream 287705 16653691 ~ 16656167 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 548952 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 571648 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1921017 18287003 ~ 18287212 (-)
AMCG00003231 NA other downstream 1206605 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1673004 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 2917100 13407272 ~ 13430324 (-)
G141004 NA other downstream 3468003 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3492083 12851021 ~ 12855341 (-)
G141826 NA other upstream 382075 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 3177651 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3436093 19802079 ~ 19876762 (-)

Expression


Co-expression Network