AMCG00003256


Basic Information

Item Value
gene id AMCG00003256
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16527189 ~ 16559206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003256
ATGAGGTCAACGGCTGATTCAATTAAAACCAGAACACCCTGTGGCTCGCCTGTTTTgcttattgtattgcttttcttttctcgtCTTTTAGTGTTGGATCAGCTGCTCTCAGAACTCGACGAATTCCTGAGGATTCTTGACAAGGAAAATCTCAGCAGCAACGCCATCGTCCAGAAATGCCTTCTCACAGAGCTCCTGCAGGGTTATATGTCATCAAATGATGGTGATGAGGAGTACATCTACATGAACAAGGTGGTCATGTGTGGACAGAATCAAGAAAAACACGTTTTTGAGCGAGATGACTTGAGTGATATTCTGACCAATGGAAATCTAGGGAAATACATGCCGGCTCCCCAGAAGAGCCTGCCAGACCTCCCGCATCCTAAACCATGTCCAGAAAGAGATCTAATCCCACTCCCCAAACCCGACTCTCCCGAGGGTTACTACGAAGAAGCTCAGCCTTATGACATGGCGCCCAATGAGGACTACGAGGCCGTTAGCAGCTCCTATGAGTCCTACGATGAAGAGGAGGTGACTAAAGGCAAGTCGACGACCCACCAGTGGCCTTCCACTGAGGCCTCCATTGAGCTGATGAAGGATGCCCGTATCTGTGCGTTCCTGTGGAGAAAGAAGTGGCTGGGCCAGTGGGCCAAGCAGCTGTGCGTCATCAAAGAGCACCGCCTGCTGTGTTACAAGAGCTCCAAAGACCAGAACCCGCAGTTAGATGTGAGTCTGGTGGGCTGCAGCGTCATTTACAAAGAGAAGCAAGTGAAGAAGAAAGAGCACAACCTGAAGATCGTTCCAATGAGCGGAGAGGTGATCGTTCTGGGCCTTCAGAGCAAGGAGCAGACAGAGCAGTGGCTTAAGGTAATTCAAGAAATCAGTGCTAGACAAGCTGACGTTTCTGATGTTTCCCACTATACTTCAGACTCACCGCGGCTCATCTGCACGAAGGGTGACACCAATGAGAGGTACTCCATCACGTCGGAGAGCGGGAGCAGCACAGACAGTCACGTAGAAACTCCAGAAATGAAAGACGTCAAGAAAAAATCTGGAGCAGGTCTGAAGCTGAGTCATCTAATGAACATTGGAAAAAAGAAACCTACCTTATTGGACAGTCCAGAGAAAACTGTCGACACCTCTGGGTACCTCAACGTGCTCGTAAACAGCCAGTGGCGTTCTCGCTGGTGTTCGATTAAAAATGGGCAGCTGTGGTTCTACCAGGACAAGGGCAGGAACAAGGTCACCCATCAACCAGTAACCCTGGAAGGCTGCATGGTGCTTCCAGACCCCAGTCCGGACCACCTGTACTCCTTCAGGATCCAGCAGGACGGAGAACAGCTAGCCACGCTGGAGGCCAAGTCCTCAGCAGAGATGGGGCACTGGCTGGGCCTGTTGTTGTCGCAATCTGGCTCCAAGACCGACCCAGAGGAGCTGACGTACGATTACGTGGACTCTGACAGGATATCCTGCATAGTCAATGCGGCAAAGACCTCTTTATACCTTATGCAGAGGAGGATCTCTGAGCccaatacatacacagacaaccTGCCTGCCATTCAGAATGACCCGGATGACATTTACGATGATGTGGCCGCGACGGAGCAGGAGGAGGCCGTCGGTATCCGACTGAGTGCCGAACAGGATCCAGACAGAGTCTACCTAGACCTCATCCCTGTGAAATCCTTCCTCCACACCTCTGGCAGGACTTCCCCCCTGGGATCGTCAGGGCTGGGCCAGGACCCTAGCCACACACTGGCAGGCACCATAGGGCCCAGGGACTCAGAAGAAGTTGACAGCAAAGCAGAGGAAACCACAAGCAAGCCACCCCAGGTTAACCCTGAACCACCGCAGACATGCAACAACACTCACGTCCAGCCTGTGGCGCCAAAGATGGAGGCCGAACAGCCGTTCCCCATAGCCACCATCAAAATCCAGTCCCAGAATCAGAAAATCACCTTTCCCAATAACGAACCCCAGCGGAGATCTGTGCCCAACCCCCAGGCGGTGAAATTGCCTACAGAGACTCCTGAGAAGCTGAGAGTGGCCGCAGTAGTCTCGGTGGGATCGATAGAGAATAAACTTGGGAAGAACCGCACAGAGGCAGAAGCCCGCCGCTTCACAGACGAGAGGGACCggctggagagggagaaggagcaGATTCGCAGCAACCTGGCCCATCTCCGCAAACAGAAGCGAGAGCTGAAAGACCTCCTGTCCTCCTCTAAAGACCGGGCGGAGCAGGCAGCGCTGGAGAACCGCCTGCGGGAGATGGATGAGGAGTGTCGGCAGGAGGAGAGGCGGCGAGTGGATCTGGAGCTCAATCTGGTGGAAGTTAAAGAGAACCTGAAAAAGGCCGAGTCGGGGCCCTTCACCCTGGGCACGACAGTGGACAGCGTCCTACTCGATACAGTCAGCTCCAGCGCAAAGCCCACTGTATGCACAGCAGCACCCGCAACACCCAGCAATGGGGACACATCGCCAGTCAACTCTGCCACAGCCTTAAAGAACAGACCGATATCCATAATGGTGGCCagcaaaggaaatgttttacagaaagcCAAGGAATGGGAAAAGAAAGCCACCAGCTAGAATTGACAGTCCTCCAGCAGTAAACTGCTTCCATGGACTGGAATGGTCACCTTGTAATCAGGTCTGCTTGAGACTTCAGCCAAGGATGCCAGGGCTGACTGGGCCTCCGGGCTGAGCTTGCATCTCAACAGACATTGCTGGGATCTGGTTTCGGCTTCGTAAAATCAAAAGACTGGATCCGCTGTTATGCCACTGAGCAATGGAAAGTGCTCATCAGTCTTTTACACAATCTCCATTTTAGTCGAATATGCTTGTTCCCTTGGACAAGCACGTTGCTGTACATATGTTTACTGCAAATGcttggttttacaaaaaaaaaagcaaaaagggaaatatagAGGTATAGTTTAGCATTAAGAACCTTTTAATACATTCAGCGCACATCACAGATTACTGACTGGCAGGATTTCAGTCATATCCGGGGTTAAAACAGAGACCCCAAATCATTCTGTTCAAGGGTCTGTATGTAAGATGATTTAACAATTGCTTACATCTGATTGTACAGTGCaagcatatttttgtatttttgataaaGACAGGTCAAAGCATCCtatctgtattttctttaccAATCATGGGTGGAAAGAGGTGTAAACCTAATtagtaattttttattttttttaatttgagctCCAAAGACTGTGGGAATAAAAGCATCTTGTCCTAAAAATCTACATACCTTCCTAACACACGTCTCCTCTCAACACAAGGCCCAGGTCATCAGTCCTGATGTATACAATGTAGGTAAAACCACTGGAATcaggcttttgaaaatgtgatcAAATgtctaaagaaaaataataggacaGGCAGGATTCTAAACCAAGGAGCAAAAACTATAAGAGTAGCAGCTTCATGTTTATGCAgatcatttaatttgtcttttatgTTCCTTTCCCAGAAGATCTGTAACTATTTAGGTTCACcattactatattattaataataaaataatatattgcaccAGCTGTTTCAGGGTGAGAGGGTTATCTTTTCCAGAACTACGTGGAGGAGAGAGGCCTTTAAAAAAGCCAAAGACAGGTGAAGTTTGAATGAAGAATACGGTAGGAGATATTGACATTTTTTGAGTCACAGAATAAGTAGAATAGGGTACATATTCTGGGATTCACCGAATGTGAATATCTCCCATTGTCAATCACGCAAGATGACATTATTTCAGAACCTGGGGACTTACTAACAAGGTGCCACTCGCCTCTACGCTGCCTTAATGAAGAGCAATCTCCATCAAGTCAATTTTccattgttgtttgtttgctatgTTTTTCCTCCCTAAAAAGGTCAGCTTTTGCTagtacaaacaaacattgtagacattgtatatttttatgtatgtccGTAGCAAGgttgtaaatacatatataagccTATCTATAGTGTAAACAGTTTCTTTGATTTGCTAATGTATGCCAGTTACAGTGGTGGTTTATGCAAATAAAACGATTATCAAA
>TU178303
AGTCTCGGTGGGATCGATAGAGAATAAACTTGGGAAGAACCGCACAGAGGCAGAAGCCCGCCGCTTCACAGACGAGAGGGACCggctggagagggagaaggagcaGATTCGCAGCAACCTGGCCCATCTCCGCAAACAGAAGCGAGAGCTGAAAGACCTCCTGTCCTCCTCTAAAGACCGGGCGGAGCAGGCAGCGCTGGAGAACCGCCTGCGGGAGATGGATGAGGAGTGTCGGCAGGAGGAGAGGCGGCGAGTGGATCTGGAGCTCAATCTGGTGGAAGTTAAAGAGAACCTGAAAAAGGCCGAGTCGGGGCCCTTCACCCTGGGCACGACAGTGGACAGCGTCCTACTCGATACAGTCAGCTCCAGCGCAAAGCCCACTGTATGCACAGCAGCACCCGCAACACCCAGCAATGGGGACACATCGCCAGTCAACTCTGCCACAGCCTTAAAGAACAGACCGATATCCATAATGGTGGCCagcaaaggaaatgttttacagaaagcCAAGGAATGGGAAAAGAAAGCCACCAGCTAGAATTGACAGTCCTCCAGCAGTAAACTGCTTCCATGGACTGGAATGGTCACCTTGTAATCAGGTCTGCTTGAGACTTCAGCCAAGGATGCCAGGGCTGACTGGGCCTCCGGGCTGAGCTTGCATCTCAACAGACATTGCTGGGATCTGGTTTCGGCTTCGTAAAATCAAAAGACTGGATCCGCTGTTATGCCACTGAGCAATGGAAAGTGCTCATCAGTCTTTTACACAATCTCCATTTTAGTCGAATATGCTTGTTCCCTTGGACAAGCACGTTGCTGTACATATGTTTACTGCAAATGcttggttttacaaaaaaaaaagcaaaaagggaaatatagAGGTATAGTTTAGCATTAAGAACCTTTTAATACATTCAGCGCACATCACAGATTACTGACTGGCAGGATTTCAGTCATATCCGGGGTTAAAACAGAGACCCCAAATCATTCTGTTCAAGGGTCTGTATGTAAGATGATTTAACAATTGCTTACATCTGATTGTACAGTGCaagcatatttttgtatttttgataaaGACAGGTCAAAGCATCCtatctgtattttctttaccAATCATGGGTGGAAAGAGGTGTAAACCTAATtagtaattttttattttttttaatttgagctCCAAAGACTGTGGGAATAAAAGCATCTTGTCCTAAAAATCTACATACCTTCCTAACACACGTCTCCTCTCAACACAAGGCCCAGGTCATCAGTCCTGATGTATACAATGTAGGTAAAACCACTGGAATcaggcttttgaaaatgtgatcAAATgtctaaagaaaaataataggacaGGCAGGATTCTAAACCAAGGAGCAAAAACTATAAGAGTAGCAGCTTCATGTTTATGCAgatcatttaatttgtcttttatgTTCCTTTCCCAGAAGATCTGTAACTATTTAGGTTCACcattactatattattaataataaaataatatattgcaccAGCTGTTTCAGGGTGAGAGGGTTATCTTTTCCAGAACTACGTGGAGGAGAGAGGCCTTTAAAAAAGCCAAAGACAGGTGAAGTTTGAATGAAGAATACGGTAGGAGATATTGACATTTTTTGAGTCACAGAATAAGTAGAATAGGGTACATATTCTGGGATTCACCGAATGTGAATATCTCCCATTGTCAATCACGCAAGATGACATTATTTCAGAACCTGGGGACTTACTAACAAGGTGCCACTCGCCTCTACGCTGCCTTAATGAAGAGCAATCTCCATCAAGTCAATTTTccattgttgtttgtttgctatgTTTTTCCTCCCTAAAAAGGTCAGCTTTTGCTagtacaaacaaacattgtagacattgtatatttttatgtatgtccGTAGCAAGgttgtaaatacatatataagccTATCTATAGTGTAAACAGTTTCTTTGATTTGCTAATGTATGCCAGTTACAGTGGTGGTTTATGCAAATAAAACGATTATCAAAACTGCTTTTAT

Function

GO: NA

KEGG:

id description
K23782 AFAP1L; actin filament associated protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003256 True 4061 mRNA 0.48 19 16527189 16559195
TU178303 False 2018 TUCP 0.43 4 16554011 16559206

Neighbor

gene id symbol gene type direction distance location
AMCG00003253 NA coding upstream 78928 16424886 ~ 16448261 (+)
AMCG00003249 LOC105010526,LOC106607942 coding upstream 534666 15971795 ~ 15992523 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding upstream 596158 15927768 ~ 15931031 (+)
AMCG00003247 NA coding upstream 635323 15887116 ~ 15891866 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding upstream 1226049 15288624 ~ 15301140 (+)
AMCG00003260 NA coding downstream 31561 16590767 ~ 16610586 (+)
AMCG00003258 LOC107689962 coding downstream 66244 16625450 ~ 16653567 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding downstream 106228 16665434 ~ 16671432 (+)
AMCG00003261 NA coding downstream 152066 16711272 ~ 16722062 (+)
AMCG00003262 NA coding downstream 186018 16745224 ~ 16748526 (+)
G141592 NA non-coding upstream 1272345 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 1309638 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 1336844 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 1340864 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 2018350 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 239753 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 473219 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 958514 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 1143966 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 1153454 17712660 ~ 17712864 (+)
AMCG00003257 ablim1 other upstream 26195 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 1921641 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 2227196 14283850 ~ 14299993 (+)
G141331 NA other upstream 2342546 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 2395914 14122783 ~ 14131275 (+)
G141962 NA other downstream 1117073 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 1162038 17721244 ~ 17725381 (+)
G142078 NA other downstream 2029368 18588574 ~ 18692204 (+)
G142172 NA other downstream 2976487 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 3059675 19618881 ~ 19633150 (+)

Expression


Co-expression Network