AMCG00003261


Basic Information

Item Value
gene id AMCG00003261
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16711272 ~ 16722062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003261
ATTAACTGGCGGTAAGTATGGAGAGGAATATGACATTTTAGTACTCGTACAAGATGACACAGCTGCCGGATTTAAGACTTTAAGTcgtcagtttttattaaaataaatatatgaactaTATTTATAGGTTGTGTCAGTTAAGCTAGGTAACTAATTACTTACGATTCAGACCTGTTCATTCATGCTATATTTTCCCTACACATATCTAATAATTAATTGATCGGTTCAtattcaaaatagtttaatcATCTCAACTGTAAGTTTaagtgtgatttgttttatgtccTGTGTAaaggaatggaaaaacaaagacactggttatacatatattaaaaatacgtATACACTAGTATCCACAGAGTTTATAGCCTATACACATTCATTGAAATATCCGTCAGTGATCAGCACGATATATGCTATATATTTAGGTAACtaaaggtttttatttcattagaaTATGAATGACCCTTTAAGGTGACAGTATATATGATAATACGGTACTTCATAGTAGCGTGAGCGTTTTGGGGGCTGCAATGCCACAGGATGGCTCCGAGGATGACATATGGGAATATAAATCTCTTCGGAAACCTAAAGCACTAAGTAATACAAAACCTAGTAAAGGCAAGGCTAAGCAGACGAATAATTGCAGCCTAGCACCACAGAAATGCTTGGTGAAATCAAACGGACCCAGGCGAAAACAAGACACTGAAAGAAAGTCTTACAGTGGTCAAGAACAGGTCAAAGAGTGTGCAGGTGTCCATCAGACACAAGAGAACAAACACCAAAATACAGATTCAGTGGAGAAGCCAGGACCGGCCAGCACCCCTCCCACCTTTCCCAGTGAGAATGATGGACCAGCAACAGTATATAATGAAGAAACTCAGTTGCCCACCATTTCAAAGACTGGCAAACAGGGACATTGCCCCAGCTGTCAAATGCCTTTCTCCATACTACTGGTGCAGTCGCCCCGGTGGCATGTGGCAGAGTGTTTGGACACACTTGGAGGTGCAGAATTAAAAGAATGTCCAGATGGCCTTCAATGTACTTCCACAATCCCAAACCACTACAAGCGCTACTCCCACTTCTTGCTGGCCCAGAGCAGAGCAATCAGTGATAATGACTGCTTCAGTCTTGAAAGCTCCCAACAGAGTTCTGCCAGTAGCTCCAGCTTTTCAAGTCAAAATTTCTCCCCTAGCTCCCAAGGGGTTAGCCAGCAGGTCTTGACTGGGAAATCAAACGCGCTGCTTCTCTTAAAATCCCCGACCCCTGAGGACATCCACAAAAAGAAGGGATGGTCCCCTAAGTTTGCAAAAGGGAAAAGTCCCTCGAAGAGTCTAAAGAGCCAAAGCAGTCAGAAAAGTCAGGAATGCAGACCACGGGAACAATTCAAAACAAGGGAGGGTAAAACATCAGAGGAAGATCTGAAGAGGCAACCTTCCCCAGAGAGTGATGGAGACATCTCATACTCTCCACTCTGTAGCGACACTGAAGAGGGGACGCTCCTACATGACATGGATAAAGAGAGGATGGCATTATTTGGCAACAGTTCCTCTGAGAGTGAAGAGGGTTACTCCCCGACTTACCCAACACCTCATGCCTCTAGGGAGGGACCAGAACCAACCAATTCCAAGAACTCAGAAATAGACACAGGTGGTTTGGATGAAGACCTAAGCAACGATGACCTTTTTGCAGAGTATTTTAACCAGGAGGAGACTAAAGAAGCAATAAACACCTTTGCGGTTGATAGCTCCTCTGAGACAGATCGGATGCCTGTGGTCTCGTTAGCACATAATCCCCAGGTAGGTTTCAGTAACAGCGCCACAGCTGTTAATTTGTCTCAATTGAGGTCATCTACTGACAAAGGCCTGCGAGAAGCCAGTATTCCAGCTTCTGGCAGAGATACACAAGGCAAGAATGAGCAACTGTCACCGTCTCCTCAGAGTTTAGTGCTGGACTGTTTAAGGGACCAAATCAGTAGGACCCGAGAGACAAACCTTGCTTCCAGGGGGTTGGATATATCTTCTATTAATGTGAAACAAGAAGGTGGTTCACAAGATCTTTCTGTGACGTCGCAGAACCCCTTGAGCATGgcttctaaaaaaaacaaagccaagTCAGCTGCTACAGGTCTCAAGCAGACTGATATTGGGGTGTTCTTTGGGCTCAAACCCCTGAAAACGAAAGAGGTACGAATGGAAGACACTCCAGCTAAAGTGGAGGCCCAGGCTTCCAGCAGGGGGGTGAACTCGATTGTCAACTCTGGTGTCAGGaagcagaggaagaggaaagcCACCGGTTCGCTCAGTGATTCTCGTGCGTTGATACCTGTGGATGGCTGTGATGATAAGAATGGACCCCAGACCCAGGTGGCAAATGGATATCGTCCAAAAAGAAAGAGGTGGAACAGAGGCATGGCTGCTGAAGAGCCCGAGAATGCCAGACGGTGCCCTTTTTACAAAAAGATTCCAGGGACTGCATTTGTGGTGGATGCTTTCCAGTACGGAGCGGTCGAAGGCATCAGTGGCTACTTCCTCACCCATTTTCACTCGGACCACTATGGCGGACTGACTAAGCACTTTCGATTACCGATCTACTGCAACAAAATTACAGGTAATTTGGTGAAGAGTAAGCTTCGAGTGGAGGAGCAATATGTTAACATCCTTCCCATGAATACAGAATGCACCGTGGAGGGTGTCAGGGTTACATTAGTGGATGCCAACCACTGTCCGGGAGCCGCAATGCTGCTCTTCCATCTCCCCAACAGCAGGACAGTGCTGCACACCGGAGATTTCAGGGCCGATCCCTCAATGGAGCGCTATCCTGAATTGCTGGGCCAGAAAGTCCAAACCCTCTACCTCGATACTACGTACTGCAGTCCCGAGTATACCTTTCCCACACAACAAGAAACCATCAGTTTTGCAGCCAACATTGCCTTTGAACACGTAACCTTAAACCCCCGGACCTTAGTGGTCTGTGGTACCTACTCAGTTGgcaaagaaaaagtatttttggCTCTCGCCGAGGTGCTGGGCTGCAAAGTGAGCATGTCTCGAGACAAGTACAACACGCTGTGCTGCCTGGAGAGCGACCGGATCAAAGAGCTTATCACAACGGAGTGGAACGCCACCCAAGTGCACGTGCTGCCCATGATGCAAGTGAATTTTAAAAATTTGTCATCACACCTGAAGAAGTATTCGGGAAAATACGAACAAATCTTGGCATTCAAGCCCACGGGATGGACCTTCTCCAGCCAGAGTGGATCTGTAGAAAGCATTAGACCTCAAGTCAAAGGAAATATAACCATATACGGCATCCCCTACAGCGAACACAGCAGCTACCTGGAGATGAAGCGCTTCGTGCAGTGGCTGAGGCCTGAGAAAATCATCCCCACTGTCAACGTGGGGAGCTGGCAGAGCCGGAAGGCCATGGAGAATCTGTTTGCCGAGTGGATGGCGGACGTTAAAGCAGAAAGAAGAGTCTGACAAAGGCAGGGCTCCAAAATAGGTTGTAAAACCAGTGTTCGTATTCTTGAAGAACTAACGTTTCCTGGTCTGCTCTAGCTGTGTGTAGGAGATTAAACCCCTTACTGCTTTGGTGgagaaatggttttaaaatcgTGATACGGAACTATATTGCACGACAAAACTTTCCAGTTCAGCTACCACAATCACTGCCTTTCATTGTACAGTGCCTGACTGCAGCCTGTTAGTGTTTACAAGAGCAAAGATGCtgaactgtaaaacatttttttttaaatggtcctcaattttaaattttttgaAAACGTTATGGAAATGGctgtaaatatttcagtatttaagtattttctaattgtgtcctaaaataaaatgttttccacaa

Function

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003261 True 3861 mRNA 0.45 9 16711272 16722062

Neighbor

gene id symbol gene type direction distance location
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding upstream 39840 16665434 ~ 16671432 (+)
AMCG00003258 LOC107689962 coding upstream 57705 16625450 ~ 16653567 (+)
AMCG00003260 NA coding upstream 100686 16590767 ~ 16610586 (+)
AMCG00003253 NA coding upstream 263011 16424886 ~ 16448261 (+)
AMCG00003249 LOC105010526,LOC106607942 coding upstream 718749 15971795 ~ 15992523 (+)
AMCG00003262 NA coding downstream 23162 16745224 ~ 16748526 (+)
AMCG00003263 NA coding downstream 49262 16771324 ~ 16789958 (+)
AMCG00003264 aldh18a1,LOC107081732 coding downstream 192903 16914965 ~ 16930855 (+)
AMCG00003265 NA coding downstream 211459 16933521 ~ 16941107 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding downstream 584438 17306500 ~ 17311221 (+)
G141592 NA non-coding upstream 1456428 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 1493721 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 1520927 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 1524947 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 2202433 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 76897 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 310363 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 795658 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 981110 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 990598 17712660 ~ 17712864 (+)
AMCG00003256 NA other upstream 152066 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 210278 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 2105724 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 2411279 14283850 ~ 14299993 (+)
G141331 NA other upstream 2526629 14180780 ~ 14184643 (+)
G141962 NA other downstream 954217 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 999182 17721244 ~ 17725381 (+)
G142078 NA other downstream 1866512 18588574 ~ 18692204 (+)
G142172 NA other downstream 2813631 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 2896819 19618881 ~ 19633150 (+)

Expression


Co-expression Network