AMCG00003263


Basic Information

Item Value
gene id AMCG00003263
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16771324 ~ 16789958 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003263
AAGTTTAACGCATCTGTCCACAGAGAGCTGGGTGGATTTCTGCCTCTTCACTTGTCTTCTGAAATATTCTACTTttattcatctttatttatttattataactgcTTTCCAAAATGAATGTCCATCCTTGTGCCAGGTGTGGATATGTGGTCTACCCAGCTGAGAAAATCAATTGTATTGACAAGACCTGGCACAAAGCTTGTTTTCACTGCGAGATATGTAAGATGGTCCTTACTACAAATAATTTTGTCAGCCATCAGAAGAAACCCTACTGCCAAGtGCACAacccaaaaaacaacactttcaccAGTCTGTATGAGACGCCAGTCAACATAAATGCAAAGAAACAATCTGAAGCTGTCAGTGAGATTAAATATCGGGAAGAAGGAGAGCGgtataaatctgtttttcacTGGGATATGAAGTCACGGGAGGTGGAACATGCCCGAAAAGTCAGCCAACTTGCAAGCCAGAAAGCATATCAAGCTGAATATGAAGAACAGAAATCTTGGTACACAGGCACAGCCTCTGATCCAGAAATGATAAGACTGGCACAAGCCCAGAAGACCATCAGCGACGTCGAGTATAAACGGGGACATGAGGAACGGGTTTCTAAATACACCTCAGTAGCTGATACCCCTGAAATCTTGCACGCCAAAGCAGGGGGCTCCCTCGCCAGTGATGTGAGTATAAATCGCTATGACAGATCCTCTCTGTGCTTTTCTGATGTATTCCTGTCTCACAGCCTGGGCAGCCCAGTCAAGGTCTGCAATGCTATTTTCTCTCGGCAGATTAAATACAGTGAAGAGTACGAGCAGCTGAAAGGAAAGGGTAGCTTCCCAGCCATGATCACCCCAGCTTATCAGATCGCAAAGAAAGCCAACACCCTGGCCAGCGAGGTGGAGTACAAGCGTGGACACGAAGAGAGGATTTCTAAGTACACCTCCATAAGCGACACCCCTGATGTACTGCTGGCCAAAGCCGGAGGACAACTTGCAAGTGATTACTTATACACTGAAGAATATGAGCACCACAGAGGGAAGGGCAGTTTCCCTGCCATGATCACCCCAGGATATCAAATGGCCAAGAAAGCCCACAACCTGGCCAGTGACATTAAATACCATGAGAGGTATGAGAGGGAAATGAAAGGGAAGGGAAGCAGTGAAGCAGGGCAGGCCGAACTGGCCCTCGCCAGAGAGAACGCAGAAAAGTTCAGCCAGCTTGCTTACACTGAAGACTATGAAGAGCACAGAGGGAAGGGCAGTTTCCCTGCCATGATCACCCCAGCCTATCAAATGGCCAAGAAAGCCCACGACCTGGCCAGTGATTTGAAATACAAGCAAGGCTTTTCCAAGTCGAAAGGCACAGCTCACTTCAACACCCTGACAACTGAAGACAACCTAGCCCTCAAAAATGCCCAGAAAATCAACAAGCTAGTCAGCGAGGTTGAGTACAAGAAGGATCTGGAGAACACCAAAGGTCACAGCATTAACTACTGTGAAACCCCCCAGTTCAAGAATGTGGCCAAGATCTCCAAATACACCAGTGATATCAAGTACAAGGATAAGTATATGAACCAGATGAAGGGCCATTATGAAGGAGTTGGGATGGACAAGAGGACACTGCACGCCATGAAAGTCAAAAACCTGGCAAGCAATATCGCCTACAAATCAGATTACGAGCACGAGAAGAGCGAGCACGCTGACTACAATTATCCCGCCACCATGACCCCTTCGTACGAGACTCAAAGGAAACTGGAGCCGCTGAAGGATGTGAACTACAGACAGCACGTTGACAAATTGAAGTACAGCTCTGTCACAGACACTCCTGATATAGTGCAAGCCAGAATCAATGCTCAGCAGCTCAGTaatCTAAATTACAGGGCTGACTACGAGAAAACCAAGAGCAAGTACACGCTGTCTCAGGATCTCCCTCAGATCAAGAAAGCCAAGGCCAACGCAGAGCTCTTCAGTGATATCAAATACAAGGAGAACTGGGAGAAGACAAAATCTAAAACATGTGACCAAGGCTTTGGTAACCTGTCTATACTAGCAGCCAAAGCCTCCACAGATTTAGCCAGTGATattaaatacaaagaGGCCTTTATGAAAATCAAGGACAAGGCAGTGGGAGCCAATGTGAGCGATTCCAGGACCTTACATTCACTGCAATGCTCCAAGTTGAACAGTGagAACAAGTACAGGGCTGACCTCACGTGGATGAAGGGAGTGGGTTGGGATACCGAGGGCTGTCTTGGTGTGCAACAGGCCAAGAGAGCACGGGATCTTGTTAGTGAGAAAAAGTACAGACAGACGGTGGACTCTGTGAAGTTCACCCAAGTGGCAGAGACTCCCTTTATGAAACACGCCAAGAAAAGCCAGAAGCTTCAGAGTGGGttGGCGTACAAAGCTGGCACCACACAAACACTTCACCAGTACACCATGAACAAAGATGAGCCTCTCTTCAGGCAAGCCAAAGCGAACGCAGAATACCTCAGTGAGATTAAATACAGAGAGGAGTATCAGAAGACAAAGGGCAAGATGATTGGAGTGAAGAACAACAAGTACAAGTCTGACTTGAACTGGATGAGAGGGGTTGGGTGGGCTACTGCCGGGTCCTTAGATGTGGAGCAGGCCAAGAAATCTGGAGATCTGATTAGTGATCAAAAGTATCGTCAGCATCCATATGCGCTGAAGTTCACAAGTGTGAAAGACACTCCTGAAATGGTTCAAGCCAAGATCAGCTACAACCAGTCTGTGGATAGGCTGTACAAAGAGGAGGGGGAGAACATGAAGCACCATTACACCATGACCAGTGACCTCCCGGAGCACATCCAGGCCAGACTCAACGCCACCAACATCAGTGAGACCTGTTATAAGCAGTCTTGGACTAAACTCAGGGATGCTGGCTACAAATTGCGTTTAGATGCCATTCCTTTCCAGGCTGCCAAAGCATCAGGAGACATCATCAGTGATTACAAGTATAAAGAGGCATTTGAGAGAATGAAGGGACATATGATTGGATTGAAAGGACTGGAGGACGACATAAAGATTGCTCACTCTGTCCATGCAAATCAGCTACAGAGCAACAAACTCTACAGGTCGGATCTGAATTTCCTGCGAGGTGTGGCTTGGATCAGCACCGGCGCCGTGCAGATTGAAGGATCCAAACGAGCCAATGAACTAATAAGTGACaaaaagtACCGTCAGCTGCCATATTCCTTCAAGCACACAGCTGTAACAGATTCTCCTGACATGGTTCACGCGAAATTCAGCTCCCAGATCACCAATGAGcGCCTGTACAAAGAAGCGGGAGAAAACGCCAGGCACCATTACACCTTAACAGCCAGCCGACCTGAGCTAACCCAGGCGAAAATTAATGCCGCCAATTTCAGCGAGacaaaatacagagaatCGTGGAAAAATCTGAGGGCCCAGGGCTACAAGTTAACCATGGATGCCATTCCGTTCCAGACGGCTAAAGCATCATCAGATATAGCAAGTGATAATCTGTACAAGTCTGACCTGAACTTCATGAAGGGAGTTGGCTGGATTGCAGTCGGGACTCCCCAGATAGAGACGGCCAAGAGAGCAGGAGAGCTCCTCAGTGAGAAAAGGTACCGGCAGCTGCCTGACAGTTTGAAGTTCACCGCCATTGCCGACTCTCCAGATATTGTCCATGCCAAGAACAGCTATTTGCAATGCAGCGAGAGGCTCTACAAGTCTGGCGATTCAGAGTCCATACACAGATGCAGCTTACCTCCTGACCACCCCGATTTCATCAGAGCCCGTCTGAACGCTCAGCACATCAGCGACAAAGTCTACAAAGCCTCGGGCGACCAGGTCAGATCTGCTGGATGCGACGTCCGCCTGGATGCCATCCCTTTCCAAACCGCGAAGGCTTCCAGAAATATTGCGAGTGATTTCCAGTACAAGGAGGCCTTTGTGAAAGACAAGGGCCACCAGATTGGGCTGCGCAGCGTCGATGACGACCCCGGCATGAAGCACTTCCTGTCTGTGAATTATAAATCCGACCTGAACTGGCTTCGGGGGATTGGCTGGACGCCCCCGGGCTCCCACAAGGTGGAAATGGCCAGGCGGGCGGCCGAACTGGGATACGGGGAGGGGATGGACCCAGAAGTGGCGGCGGCTCTGTATCAGCAAATGATGAACACAGCACAGATTGTGGAGACGAGGGAAGAGATTCAGCACCCGGGAGTCAACCCTGACGCATCAGAGGTCCTTCAAGTCAAACGGAAGATAGTGAAGACTATTAAGAAAACCCTGTAGACGCCTGTTTGCCAACCATAATTCAGTATGGTCCACTGCTGTTTACATGCAATCTGACTGCCGTGATCTACGAATgcgtttttatttctttttttttcattggaatATCCTGTTTTTCTATTCACGTAAAGgacatgtttattataaagaACTATAATGCTAAGATACTCCAGAAATGACATGAAGggaaaatgaagatgaaaagCTTGCCTTTGTTAGAccattttattagtattaacctcatttttcttgttgcttcatttatatttaaagacaaacaaaatgggATGGACAAGATTTTGTTAGCCCGAGAACATCCCTGGAGGTATAGATTTAACTtctaaataagaaaaagaaaaaagaaaaaaatctgtgcTGCATGATACCTAAGGGAATTGTAGTGTAATTTCGAATGATATAAACGCATTGGAGAAAAGGTGAAATGCTTATGAAAGCCGATGCCATAACATTGTCCTTTTATAACAACTTCCTTTACAACTGATAAACaagtttagatttttctttggATTTTGGATGATTTAAGCTAGTTCTTTTAAATGGTTGTTcatgatattttaatatatgactGACAGGTTCAGCTTCATAAGAAATAGAGGAGTTTACTGCAGCTGAGCTTAATGTTTTCTGCTGGAAGGGGTCAAGACTCAGTGCATGTTAACTCTGTGTCTGGcaaaataaaagattttaaaacaatctcaGCTGTTCTTTACTGGATTTCTCTCAGGTTGACAagcatttataatttgttttcaaccACTGTGAAGGCTGTAAGTTGGCATCttcttttatttaatactttgGGGCCAA

Function

GO: NA

KEGG:

id description
K24421 NRAP; nebulin-related-anchoring protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003263 True 5117 mRNA 0.46 38 16771324 16789958

Neighbor

gene id symbol gene type direction distance location
AMCG00003262 NA coding upstream 22798 16745224 ~ 16748526 (+)
AMCG00003261 NA coding upstream 49262 16711272 ~ 16722062 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding upstream 99892 16665434 ~ 16671432 (+)
AMCG00003258 LOC107689962 coding upstream 117757 16625450 ~ 16653567 (+)
AMCG00003260 NA coding upstream 160738 16590767 ~ 16610586 (+)
AMCG00003264 aldh18a1,LOC107081732 coding downstream 125007 16914965 ~ 16930855 (+)
AMCG00003265 NA coding downstream 143563 16933521 ~ 16941107 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding downstream 516542 17306500 ~ 17311221 (+)
AMCG00003282 NA coding downstream 542376 17332334 ~ 17354879 (+)
AMCG00003284 NA coding downstream 587115 17377073 ~ 17402750 (+)
G141592 NA non-coding upstream 1516480 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 1553773 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 1580979 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 1584999 15186071 ~ 15186325 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 2262485 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 9001 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 242467 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 727762 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 913214 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 922702 17712660 ~ 17712864 (+)
AMCG00003256 NA other upstream 212118 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 270330 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 2165776 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 2471331 14283850 ~ 14299993 (+)
G141331 NA other upstream 2586681 14180780 ~ 14184643 (+)
G141962 NA other downstream 886321 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 931286 17721244 ~ 17725381 (+)
G142078 NA other downstream 1798616 18588574 ~ 18692204 (+)
G142172 NA other downstream 2745735 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 2828923 19618881 ~ 19633150 (+)

Expression


Co-expression Network