AMCG00003266


Basic Information

Item Value
gene id AMCG00003266
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16681053 ~ 16710859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003266
ATGGCGGCGGAGTGCAGCCTTACTGCATTAATGACAGTTCAGACACAGTTGGACTACGCCCTGCTGGACGCCGAGTCGGTGCAAGAGAAAGAGAACCTAATTTATCAATATCTGAAAAAGGTAGACGGCCGACAGCAGGACTTAAAGGTCCCAGAGTTTGACGAAGGGTTGGAATGGCTCAACACCAAGGGCCCCCTGTCACTGGCAAAAGATCTTCCAGGCAAAGTGGTGGTGCTGGATTTCTTCACCTACTGCTGCATCAACTGCATGCATGTGCTTCCAGACCTCCATGAGCTGGAGCAGCTACACTCTGATAAAGATGGGCTGGTTGTCATCGGAGTTCACTCCGCAAAGTTTCCCAATGAGAAGGTCCTGAGTAACATCAAAAGTGCTGTCCTGCGCTACAACATCACCCACCCTGTGGTCAATGATGCCGACGCCAAGCTCTGGCACGAGCTGGAGGTGTCCTGCTGGCCGACCCTGGTCGTGGTGGGCCCAAGAGGAAACCTGCTCTTCTCCGTGGTGGGAGAGGGTCACAAAGAGAAGTTATTCCTCTTTGTTGCAGCAGCCCTGAAATACTATAAAGAGAAAGGCGAGCTGAAATATGGTGCTATAGGGATGAAGCTGTACAGGGATTCTCTGCCTCCTTCAATGCTGTCCTTTCCCGGCAAAGTGACGGCCGACGGTACCGGGCAGCGACTGGTGATTGCAGACACGGGTCACCACAGGATTCTGGTCGTCGCAAAGAGTGGGCAGGTACTTCATGCTATAGGAGGCCCTGACAGTGGACGAAAAGATGGAGGATTTTCAGAAGCACGATTCAATTCTCCTCAGGGTGTGGTAATGAAGGATGACTCCATTTATGTGGCTGATACTGAGAATCACCTGATAAGAAAGATTGACCTGTTGGAAGGGAAAGTCAGCACAGTAGCCGGCATTGGAATCCAAGGCACAGACAAAGAAGGCGGGGCTATGGGACCTCAGCAGCCAATCAGCTCTCCGTGGGACGTGGCTCTGGGCTCAGCAGGCGATGACGACAAGAAGAACGTGTTATGGATTGCCATGGCTGGTACTCATCAAATCTGGGCTCTCTTCCTAGAGGATGGAAAACTTCCAAAAGGAAGCGATTCAAGAAAAGGGACCTGCATCCGTTTTGCTGGAAGTGGAAATGAAGAGAACAGGAACAACGCCTACCCTCACAAAGCCGGGTTTGCGCAGCCTTCAGGCCTGGCCCCCGCGCCCGAGGAGCCCTGGAACTGCGTGTTCATCGCTGACAGCGAGAGCAGCACCGTGCGCTCCGTCTCTCTGAAGGATGGGGCCGTGAAGCACCTGGTTGGAGGAGAGCGAGACCCCCTGAATTTGTTTGCGTTTGGAGATGTGGACGGAGCTGGAATCAATGCTAAGCTGCAGCACCCGCTTGCTGTGGCCTGGAACCCACAGAAAGGTGCTCTGTATGCGGCCGACTCCTACAACCACAAGATTAAAGTTGTAGATCCCAAAAGCAAGCAGTGTGCCACTCTGGCTGGCACGGGTGAAGCCAGCAATGATGTTGGTCCAGGCTTCTCCCAGTCGACATTCAATGAACCTGGTGGTCTTCATGTGGGAGAGAGTGGAAGAATCCTCTATGTGGCAGACACCAACAACCACCAAATAAAGATCCTGGATTTGGACACACTAACTGTATCGGTGCTGCCTGTTTTGGCTGAAGAAGTGGTAGATGCTTTTGTCAAGCCATCTACTGCGGTGAAAAAGATGCTCAAACTACCCAAATCTACTCCAAAGATTGAGATGTCTCCATTATCCGTCTCCTCTGGACAGAATGTCCAGATTCAACTCTCTCTCAAACTCCCTGCTGGAACAAAACTGACCAAAGAAGCACCTAGTTTCTGGGCTTTGTCAGCTGAAGGTGACGAATGGCTCCTTCAAGGACAGCATGAGACCGGAGACATCATGGATCTGTCGCACCCTCTGGCGATAACGGCCGCCATTCCCACGAGCATCCGGACGCCCAGCCCGACGCTGTGTGTGAGCGCGTGTGTCTACTACTGCAGCTCGGGGGGCAGCGCCTGTATGATGAAGGCCGTCTTGTTCAAGCAGCCGCTGCAGATCGATAACAAAGCAGAAGGCGACCTAGCGAAGGTTGTCTTGAGCTACAACTTCACATAAGTCCTGTCTGCTTCCTGCTCTTCAACGGGTTCTCCCTCAGGTGCTACTCTTTTCCTTGTTTAGGATTAATATCGGTTTCTATTTATATTACCATATCAACAAAATTCCCCAAGTGTCTTTTAGTTTCTTCTTTTGTGCATTTGAGTTATCAGTTCAAACATGCAATACTGCCTGAGATCGGCTTCCTACCGACTCCACTGTGGCCTGTTGAGTTCAACACTTGCTTGAGAAATGACCTCGGCGTGATCCGATCCTCCgcacagtgagagagagctaCAGGTCTGCAGGATTGTGGGGAGACGTTTAGATGCACGCTTGACTTCTTTTAATGGATTGCCTGTTTAACATGTAAGTATTCCTGCGTTAGGAAGAGGCTTACAGCATGTCTGCAATGAAACCCAAAGACCAAACCGCTTTGAACGAGCTCCTGCCGAGAGGGGGAGAGTTTCAGTACCCACATGTCACCCTGTCCGTCCCGATTACCTCACGCGTAAAGGAACCAAAAAGAGACTTCGCCTTGAGTGCTCCttattgtagattttttttttttcccctcttctgcTTCAAACAAACACTGAGTGACTGCTCATTTCTTGCCTGGGCAGAACAAAAAAGATTGCAAAGATTAAAGGGACGAAATTGCAATATTAAACTCGGAACAGTTGTAGCCCTGATAGTTGAGTCTAAACATCTCAAATGAGAtttgcttcattttaattttcattctgCTCTCCTAGCCTCCCATTCAGTTATttactttttgcattttgctacTTACATCAGGATACATTGAGATGTAATTACTGAGTATCAAAGGGAAACAACATTTAGCTTCCTTTGATACCTTTCCTGTTAAAATTACAGAGGAAATGAAACTACTACTTATTTGATTCGCTGTCAAACAAGCTGCAGAAAGATCTGAGTGATTttattaaggttttattttgatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgttgtttgttgggtgttttgttttggttatgcTGTTCTGGTCCATAAAGACAAGTCCCCCAAGGGATGAACGGTCCTGCTTTAGTCTTGCTGtgatggcttttttttttccattcagaaAGGAAAACCAATACATCTCCCTGCACGTTGATCCCTTAATCCCTTTTCGTTTTATTTAGAATGACATTTGACTcaaggtgggctgtgttcccttttctgtcagtttgttttctgtattagtTGTATTGATTATAGAGGTGTATGTCAGCAGCAGAAGgcttgcttttgaaatgttctgCATCCAGGCAAAAAAAACGAACTAGAGGTCCATATCTGTGTTTAGCAGGTTTACTAAAATTAACTGTCATTTAAGTATTCAAATCATtaatcaatttattattttgaaataagcACTGTCATTAAAGGATAATACTGTATCTTACACTGCATAGTTGGCAGGAGGCATGTATCATTTTATCGTATATATATCGTACATGTATACTAAATTCagatatatagaaaaatatatatgacactGTACTGTTAATCAAGGTAAACATTAGCTCTGTATTGAATGATTTATATTAGGCATATCATATTGCAAATTAAGCACTTTTTCCAAAcgtatttttcatttatcttttttctaGTGAAGATTGTTGCTCTAGAGTGTTCTCTGAAAACACTCTGAGTTCCTTCCGCTTCTCAAATAGAGAACTACGTGATCACAAGTAATTCTGTTCCAACACATGGCCACCATCAGATGTTGTTAattcaattgtatttgaattgGTTTTAGCATTTCAGAGTATCTGTCTTTAAGTATGTCACAGAGGCACCAGCAGAAATGATGATAAAGTatcaattcatttaattttacctGTCAAAATGGTGGTCTTGTGAATGAATAGAATTGAatagaagaataaaaaagaaaacttgaaatgaacattacaagttagtgtttattatagttatgttttgtttcctgttatttttctcAACATAACTGAAAGCAGTAGGTCTTCTGTACACACATGCTCTTTGCACATATTAAGAGTGATTCAGTGTGTTTACTGTGGATAATATCTCTACTTGGCTGTAGTGTGGTACACTCCTTTGAATACTAAAGCTGTTCTGATTGTACTTTCTACGTAGCTTATTTTTACAGAGTTTTCTAACTATTTTTAacatgcactgtaaaaaaaaatgctgtttatcTTGCTtccatcttttatttattaaaataaaatgaattcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003266 True 4407 mRNA 0.44 11 16681053 16710859

Neighbor

gene id symbol gene type direction distance location
AMCG00003276 NA coding downstream 15123 16664740 ~ 16665930 (-)
AMCG00003277 NA coding downstream 60493 16615320 ~ 16620560 (-)
AMCG00003274 NA coding downstream 90220 16566771 ~ 16590833 (-)
AMCG00003255 NA coding downstream 315067 16347424 ~ 16365986 (-)
AMCG00003254 LOC106590870,LOC107580847 coding downstream 339304 16331807 ~ 16341749 (-)
AMCG00003270 NA coding upstream 18055 16728914 ~ 16737927 (-)
AMCG00003267 casp7 coding upstream 38890 16749749 ~ 16757177 (-)
AMCG00003269 NA coding upstream 77372 16788231 ~ 16798189 (-)
AMCG00003275 NA coding upstream 88831 16799690 ~ 16821020 (-)
AMCG00003273 LOC107566408 coding upstream 115346 16826205 ~ 16829451 (-)
G141795 NA non-coding downstream 24886 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 182612 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 620015 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 688375 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1463246 15217474 ~ 15217807 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 204079 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 226775 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1576144 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1593772 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 1595503 18306362 ~ 18306683 (-)
AMCG00003231 NA other downstream 1540234 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 2006633 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3250729 13407272 ~ 13430324 (-)
G141004 NA other downstream 3801632 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3825712 12851021 ~ 12855341 (-)
G141826 NA other upstream 37202 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 2832778 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3091220 19802079 ~ 19876762 (-)

Expression


Co-expression Network